CX289104

Overview
NameCX289104
Unique NameCX289104
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length269
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289104 vs. ExPASy Swiss-Prot
Match: TPIS_SHEB8 (Triosephosphate isomerase OS=Shewanella baltica (strain OS185) GN=tpiA PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 2.760e-21
Identity = 51/87 (58.62%), Postives = 65/87 (74.71%), Query Frame = 2
Query:    2 DNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASL-KPEFIDI 259
            DN ++AYEP+WA+GTGK ATP QAQEVHA +RK L + VS  +  + RI+YGGSV  +N  +L AQPDVDG L+GGASL   EF+ +
Sbjct:  168 DNAIIAYEPLWAVGTGKSATPEQAQEVHAFIRKRLSE-VSPFIGENIRILYGGSVTPSNAADLFAQPDVDGGLIGGASLNSSEFLSL 253          
BLAST of CX289104 vs. ExPASy Swiss-Prot
Match: TPIS_SHEB5 (Triosephosphate isomerase OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=tpiA PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 2.760e-21
Identity = 51/87 (58.62%), Postives = 65/87 (74.71%), Query Frame = 2
Query:    2 DNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASL-KPEFIDI 259
            DN ++AYEP+WA+GTGK ATP QAQEVHA +RK L + VS  +  + RI+YGGSV  +N  +L AQPDVDG L+GGASL   EF+ +
Sbjct:  168 DNAIIAYEPLWAVGTGKSATPEQAQEVHAFIRKRLSE-VSPFIGENIRILYGGSVTPSNAADLFAQPDVDGGLIGGASLNSSEFLSL 253          
BLAST of CX289104 vs. ExPASy Swiss-Prot
Match: TPIS_BACTN (Triosephosphate isomerase OS=Bacteroides thetaiotaomicron GN=tpiA PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 3.604e-21
Identity = 46/78 (58.97%), Postives = 59/78 (75.64%), Query Frame = 2
Query:    8 VVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 241
            ++LAYEPVWAIGTGK A+P QAQE+HA +R  + D    E+A +T I+YGGS   +N KEL + PDVDG L+GGA+LK
Sbjct:  162 IILAYEPVWAIGTGKTASPEQAQEIHAFIRSIVADKYGKEIADNTSILYGGSCKPSNAKELFSNPDVDGGLIGGAALK 239          
BLAST of CX289104 vs. ExPASy Swiss-Prot
Match: TPIS_JANMA (Triosephosphate isomerase OS=Janthinobacterium sp. (strain Marseille) GN=tpiA PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 4.707e-21
Identity = 52/86 (60.47%), Postives = 64/86 (74.42%), Query Frame = 2
Query:    8 VVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDII 262
            +V+AYEPVWAIGTGK ATPA AQEVHA LRK L+   +AE A   RI+YGGS+   N KEL A  D+DG L+GGA+LK  +F+ I+
Sbjct:  161 IVVAYEPVWAIGTGKTATPAMAQEVHAMLRKQLQAK-NAEAAMQVRILYGGSMKPENAKELLAMSDIDGGLIGGAALKAADFLAIV 245          
BLAST of CX289104 vs. ExPASy Swiss-Prot
Match: TPIS_SHESH (Triosephosphate isomerase OS=Shewanella sediminis (strain HAW-EB3) GN=tpiA PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 6.148e-21
Identity = 50/87 (57.47%), Postives = 64/87 (73.56%), Query Frame = 2
Query:    2 DNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASL-KPEFIDI 259
            DN ++AYEP+WA+GTGK ATP QAQEVHA +RK L + VS  +  + RI+YGGSV  +N  +L AQPDVDG L+GG SL   EF+ +
Sbjct:  168 DNAIIAYEPLWAVGTGKSATPEQAQEVHAFIRKRLSE-VSPYIGENIRILYGGSVTPSNAADLFAQPDVDGGLIGGVSLNSTEFLSL 253          
BLAST of CX289104 vs. ExPASy Swiss-Prot
Match: TPIS_SHEAM (Triosephosphate isomerase OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=tpiA PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 6.148e-21
Identity = 50/87 (57.47%), Postives = 65/87 (74.71%), Query Frame = 2
Query:    2 DNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASL-KPEFIDI 259
            DN ++AYEP+WA+GTGK ATP QAQEVHA +R+ L + VS  +  + RI+YGGSV  +N  +L AQPDVDG L+GGASL   EF+ +
Sbjct:  168 DNAIIAYEPLWAVGTGKSATPEQAQEVHAFIRRRLSE-VSPFIGENVRILYGGSVTPSNAADLFAQPDVDGGLIGGASLNSTEFLTL 253          
BLAST of CX289104 vs. ExPASy Swiss-Prot
Match: TPIS_LACH4 (Triosephosphate isomerase OS=Lactobacillus helveticus (strain DPC 4571) GN=tpiA PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 6.148e-21
Identity = 48/81 (59.26%), Postives = 62/81 (76.54%), Query Frame = 2
Query:    5 NVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 247
            N+V+AYEP+WAIGTGK A+  QA+E+   +R+ +KD  + E A + RI YGGSV  AN KEL ++PD+DG LVGGASLKPE
Sbjct:  162 NLVIAYEPIWAIGTGKTASSDQAEEMCKTIRETVKDLYNEETAENVRIQYGGSVKPANVKELMSKPDIDGGLVGGASLKPE 242          
BLAST of CX289104 vs. ExPASy Swiss-Prot
Match: TPIS_ERWT9 (Triosephosphate isomerase OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99) GN=tpiA PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 6.148e-21
Identity = 56/91 (61.54%), Postives = 67/91 (73.63%), Query Frame = 2
Query:    8 VVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVS---AEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKS 268
            VV+AYEPVWAIGTGK ATPAQAQ VH    K+++D+++   A VAA   I YGGSVN  N  EL AQPD+DG LVGGASLK + F  I+K+
Sbjct:  162 VVIAYEPVWAIGTGKSATPAQAQAVH----KFIRDHIAKKDATVAAQVIIQYGGSVNDKNAAELFAQPDIDGALVGGASLKADAFAAIVKA 248          
BLAST of CX289104 vs. ExPASy Swiss-Prot
Match: TPIS_ENT38 (Triosephosphate isomerase OS=Enterobacter sp. (strain 638) GN=tpiA PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 6.148e-21
Identity = 53/90 (58.89%), Postives = 65/90 (72.22%), Query Frame = 2
Query:    2 DNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVS---AEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDII 262
            + VV+AYEPVWAIGTGK ATPAQAQ VH    K+++D+++   A+VA    I YGGSVN AN  EL  QPD+DG LVGGASLK +   +I
Sbjct:  160 EGVVIAYEPVWAIGTGKSATPAQAQAVH----KFIRDHIAKADAKVAEQVIIQYGGSVNAANAAELFTQPDIDGALVGGASLKADAFAVI 245          
BLAST of CX289104 vs. ExPASy Swiss-Prot
Match: TPIS_SHEWM (Triosephosphate isomerase OS=Shewanella woodyi (strain ATCC 51908 / MS32) GN=tpiA PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 8.029e-21
Identity = 50/87 (57.47%), Postives = 64/87 (73.56%), Query Frame = 2
Query:    2 DNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASL-KPEFIDI 259
            DN ++AYEP+WA+GTGK ATP QAQEVHA +RK L + VS  +  + RI+YGGSV  +N  +L AQPDVDG L+GG SL   EF+ +
Sbjct:  168 DNAIIAYEPLWAVGTGKSATPEQAQEVHAFIRKRLSE-VSPFIGENIRILYGGSVTPSNAADLFAQPDVDGGLIGGVSLNSTEFLSL 253          
The following BLAST results are available for this feature:
BLAST of CX289104 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_SHEB82.760e-2158.62Triosephosphate isomerase OS=Shewanella baltica (s... [more]
TPIS_SHEB52.760e-2158.62Triosephosphate isomerase OS=Shewanella baltica (s... [more]
TPIS_BACTN3.604e-2158.97Triosephosphate isomerase OS=Bacteroides thetaiota... [more]
TPIS_JANMA4.707e-2160.47Triosephosphate isomerase OS=Janthinobacterium sp.... [more]
TPIS_SHESH6.148e-2157.47Triosephosphate isomerase OS=Shewanella sediminis ... [more]
TPIS_SHEAM6.148e-2157.47Triosephosphate isomerase OS=Shewanella amazonensi... [more]
TPIS_LACH46.148e-2159.26Triosephosphate isomerase OS=Lactobacillus helveti... [more]
TPIS_ERWT96.148e-2161.54Triosephosphate isomerase OS=Erwinia tasmaniensis ... [more]
TPIS_ENT386.148e-2158.89Triosephosphate isomerase OS=Enterobacter sp. (str... [more]
TPIS_SHEWM8.029e-2157.47Triosephosphate isomerase OS=Shewanella woodyi (st... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC02009B09SK IF1 Citrus clementina cDNA clone C02009B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289104 ID=CX289104; Name=CX289104; organism=Citrus clementina; type=EST; length=269bp
GGACAATGTTGTGTTGGCTTATGAGCCAGTTTGGGCCATTGGTACCGGGA
AGGTTGCAACCCCTGCTCAGGCTCAGGAAGTCCATGCTGAACTGAGGAAA
TGGCTTAAAGACAATGTCAGTGCTGAAGTTGCAGCATCAACTAGAATCAT
CTACGGAGGTTCTGTAAATGGAGCAAATTGCAAAGAATTGGCAGCACAAC
CTGATGTAGATGGATTTTTGGTTGGTGGAGCTTCTCTAAAGCCGGAGTTC
ATCGATATTATCAAGTCTG
back to top