CX289112

Overview
NameCX289112
Unique NameCX289112
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length453
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289112 vs. ExPASy Swiss-Prot
Match: TLP3_ORYSJ (Tubby-like F-box protein 3 OS=Oryza sativa subsp. japonica GN=TULP3 PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 5.970e-34
Identity = 87/180 (48.33%), Postives = 101/180 (56.11%), Query Frame = 2
Query:    2 YELNVLRTRGPRRMNCIMDTIPFSSIEEGGAAP----------------TPTSFAQSFDELFFSFT------SLKGKEPITYXXXXXXXXXXXXXXXXXQPLALKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVAAVE--------PSHNVPLAEQEKVILQFGKIGKDIFTMDYHY 451
            YELNVL TRGPRRM C+M +IP SS+E GG  P                + TSF+QSF     SF+      S+                         +PL L+NK PRWHEQLQCWCLNFRGRVT+ASVKNFQLVAA          PS   P A+ EKVILQFGK+ +D+FTMDY Y
Sbjct:  249 YELNVLGTRGPRRMRCMMHSIPASSVEPGGIVPGQPEQIVPRALEDSFRSTTSFSQSFRSTT-SFSKSIMDPSMDFSSARFSDISGSIMGGDDNGEIKERPLVLRNKPPRWHEQLQCWCLNFRGRVTIASVKNFQLVAAPSPPPAGAPTPSQPGP-ADPEKVILQFGKVARDMFTMDYRY 426          
BLAST of CX289112 vs. ExPASy Swiss-Prot
Match: TLP1_ARATH (Tubby-like F-box protein 1 OS=Arabidopsis thaliana GN=TULP1 PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 5.970e-34
Identity = 86/186 (46.24%), Postives = 100/186 (53.76%), Query Frame = 2
Query:    2 YELNVLRTRGPRRMNCIMDTIPFSSIEEGGAAPTPTSFA---QSFDELFFSFTSLKGKEPITYXXXXXXXXXXXXXXXXX-----------------QPLALKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVAAVEPS-------HNVPLAE---------QEKVILQFGKIGKDIFTMDYHY 451
            YELNVL TRGPRRM+C M++IP SS+ EGG  P            DE F S TS   ++ ITY                                   PL LKNK PRWHEQLQCWCLNFRGRVTVASVKNFQL+AA +P           PL +          +K+ILQFGK+GKD+FTMD+ Y
Sbjct:  249 YELNVLGTRGPRRMHCAMNSIPASSLAEGGTVPGQPDIIVPRSILDESFRSITSSSSRK-ITYDYSNDFSSARFSDILGPLSEDQEVVLEEGKERNSPPLVLKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIAANQPQPQPQPQPQPQPLTQPQPSGQTDGPDKIILQFGKVGKDMFTMDFRY 433          
BLAST of CX289112 vs. ExPASy Swiss-Prot
Match: TLP9_ARATH (Tubby-like F-box protein 9 OS=Arabidopsis thaliana GN=TULP9 PE=1 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 8.621e-33
Identity = 78/152 (51.32%), Postives = 94/152 (61.84%), Query Frame = 2
Query:    2 YELNVLRTRGPRRMNCIMDTIPFSSIEEGG--AAPTPTSFAQSFDELFFSFTSLKGKEPITYXXXXXXXXXXXXXXXXXQPLALKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVAAVEPSHNVPLAEQEKVILQFGKIGKDIFTMDYHY 451
            YELNVL +RGPRRM CIMDTIP S +E  G  A+ + +SF+     +F S +     +P+                    PL L NKAPRWHEQL+CWCLNF GRVTVASVKNFQLVA  +          E++ILQFGK+GKD+FTMDY Y
Sbjct:  218 YELNVLGSRGPRRMRCIMDTIPMSIVESRGVVASTSISSFSSRSSPVFRSHS-----KPLR---SNSASCSDSGNNLGDPPLVLSNKAPRWHEQLRCWCLNFHGRVTVASVKNFQLVAVSDCEAG---QTSERIILQFGKVGKDMFTMDYGY 358          
BLAST of CX289112 vs. ExPASy Swiss-Prot
Match: TLP11_ARATH (Tubby-like F-box protein 11 OS=Arabidopsis thaliana GN=TULP11 PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 8.621e-33
Identity = 77/154 (50.00%), Postives = 92/154 (59.74%), Query Frame = 2
Query:    2 YELNVLRTRGPRRMNCIMDTIPFSSIEEGGAAPTPTSFAQSFDELFFSFTSLKGKEPITYXXXXXXXXXXXXXXXXXQPLALKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVAAVEPSHN----VPLAEQEKVILQFGKIGKDIFTMDYHY 451
            YELNVL +RGPR+M C+MDTIP S++E  G A  P+ F         S  S    +P+                    PL L NK PRWHEQL+CWCLNF GRVTVASVKNFQLVAA     +     P  + E++ILQFGK+GKD+FTMDY Y
Sbjct:  227 YELNVLGSRGPRKMQCLMDTIPTSTMEPQGVASEPSEFPLLGTR---STLSRSQSKPLR----------SSSSHLKETPLVLSNKTPRWHEQLRCWCLNFHGRVTVASVKNFQLVAAGASCGSGTGMSPERQSERIILQFGKVGKDMFTMDYGY 367          
BLAST of CX289112 vs. ExPASy Swiss-Prot
Match: TLP7_ORYSJ (Tubby-like F-box protein 7 OS=Oryza sativa subsp. japonica GN=TULP7 PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 1.921e-32
Identity = 85/195 (43.59%), Postives = 99/195 (50.77%), Query Frame = 2
Query:    2 YELNVLRTRGPRRMNCIMDTIPFSSIEEGGAAP------TPTSFAQSFDELFFSFTSLKGKEPITYXXXXXXXXXXXXXXXXXQ------------PLALKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVAAV---------EPSHNVPLAEQ------------------EKVILQFGKIGKDIFTMDYHY 451
            YELNVL TRGPRRM C M +IP S++E GG  P       P  F +SF  +  SF+     +  T                  +            PL L+NKAPRWHEQLQCWCLNFRGRVTVASVKNFQL+AA          EPS     A+Q                  + VILQFGK+ KD+FTMDY Y
Sbjct:  246 YELNVLGTRGPRRMQCAMHSIPASAVEPGGIVPGQPKELLPRLFEESFRSMATSFSKYSITDHSTDFSSSRFSEFGGGALQGQEQEQDGDDVNKERPLVLRNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLIAAAPQPSSGAASEPSQAGQAAQQQTQPSQPSSSSSSSSSNHDTVILQFGKVAKDMFTMDYRY 440          
BLAST of CX289112 vs. ExPASy Swiss-Prot
Match: TLP12_ORYSJ (Tubby-like F-box protein 12 OS=Oryza sativa subsp. japonica GN=TULP12 PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 4.278e-32
Identity = 83/185 (44.86%), Postives = 98/185 (52.97%), Query Frame = 2
Query:    2 YELNVLRTRGPRRMNCIMDTIPFSSIEEGGAAP-----------------TPTSFAQSFDELFFSFTSLKGKEPITYXXXXXXXXXXXXXXXXXQPLALKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVAAVEPSHNVPLAEQE------------------KVILQFGKIGKDIFTMDYHY 451
            YELNVL TRGPRRM C M +IP S+++  G  P                 T TS   SF +    F+S +  E                     +PL L+NK PRWHEQLQCWCLNFRGRVTVASVKNFQL+AA   S +  L +Q+                  KVILQFGK+GKD+FTMDY Y
Sbjct:  249 YELNVLGTRGPRRMQCTMHSIPASAVDPEGVVPGQPEQLLPGPFEESFRSTNTSSRFSFMDRSLDFSSSRFSE---ISGSANQQGEDDIPEAKERPLVLRNKVPRWHEQLQCWCLNFRGRVTVASVKNFQLIAAAS-SESSQLEQQQQQQQQNHASSSSSASDHGKVILQFGKVGKDMFTMDYRY 429          
BLAST of CX289112 vs. ExPASy Swiss-Prot
Match: TLP5_ARATH (Tubby-like F-box protein 5 OS=Arabidopsis thaliana GN=TULP5 PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 1.626e-31
Identity = 79/169 (46.75%), Postives = 95/169 (56.21%), Query Frame = 2
Query:    2 YELNVLRTRGPRRMNCIMDTIPFSSIEEGGAAPTPTSFAQ-SFDELFFSFTSLKGKEPITYXXXXXXXXXXXXXXXXXQPLALKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVA---------------AVEPSHNVPLAEQ---EKVILQFGKIGKDIFTMDYHY 451
            YELN+L TRGPRRMNCIM +IP  ++E GG  P+   F Q S DE F S  S K                        +PL LK K PRW + L+CWCLNF+GRVTVASVKNFQL++               A  PS +    EQ   +K+IL FGK+GKD+FTMDY Y
Sbjct:  245 YELNLLGTRGPRRMNCIMHSIPSLALEPGGTVPSQPEFLQRSLDESFRSIGSSK------IVNHSGDFTRPKEEEGKVRPLVLKTKPPRWLQPLRCWCLNFKGRVTVASVKNFQLMSAATVQPGSGSDGGALATRPSLSPQQPEQSNHDKIILHFGKVGKDMFTMDYRY 407          
BLAST of CX289112 vs. ExPASy Swiss-Prot
Match: TLP7_ARATH (Tubby-like F-box protein 7 OS=Arabidopsis thaliana GN=TULP7 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 3.879e-25
Identity = 65/148 (43.92%), Postives = 81/148 (54.73%), Query Frame = 2
Query:    2 YELNVLRTRGPRRMNCIMDTIPFSSIEEGGAAPTPTSFAQSFDELFFSFTSLKGKEPITYXXXXXXXXXXXXXXXXXQPLALKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVAAVEPSHNVPLAEQEKVILQFGKIGKDIFTMDY 445
            Y+ N+L++RGPRRM         S++     +P+ +S   S D+     T +  K                          LKNKAPRWHE LQCWCLNF GRVTVASVKNFQLVA V+ S      ++E V+LQFGK+G D FTMDY
Sbjct:  232 YKFNLLKSRGPRRM--------VSTLRCPSPSPSSSSAGLSSDQKPCDVTKIMKKP----------------NKDGSSLTILKNKAPRWHEHLQCWCLNFHGRVTVASVKNFQLVATVDQSQPSGKGDEETVLLQFGKVGDDTFTMDY 355          
BLAST of CX289112 vs. ExPASy Swiss-Prot
Match: TLP10_ORYSJ (Tubby-like F-box protein 10 OS=Oryza sativa subsp. japonica GN=TULP10 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 3.879e-25
Identity = 65/148 (43.92%), Postives = 77/148 (52.03%), Query Frame = 2
Query:    2 YELNVLRTRGPRRMNCIMDTIPFSSIEEGGAAPTPTSFAQSFDELFFSFTSLKGKEPITYXXXXXXXXXXXXXXXXXQPLALKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVAAVEPSHNVPLAEQEKVILQFGKIGKDIFTMDY 445
            Y+ N+L++RGPRRM C M+        E                      SLK K                          L+NKAPRWHE LQCWCLNF GRVTVASVKNFQLVA  +PSH   + ++E VILQFGK+  +IFTMDY
Sbjct:  219 YKYNLLKSRGPRRMFCTMECPSTQETWEN---------------------SLKTKS-----------------LRCTGTTVLRNKAPRWHEHLQCWCLNFHGRVTVASVKNFQLVATADPSHPDSVGDEETVILQFGKVDSNIFTMDY 328          
BLAST of CX289112 vs. ExPASy Swiss-Prot
Match: TLP9_ORYSJ (Tubby-like F-box protein 9 OS=Oryza sativa subsp. japonica GN=TULP9 PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 1.474e-24
Identity = 67/148 (45.27%), Postives = 77/148 (52.03%), Query Frame = 2
Query:    2 YELNVLRTRGPRRMNCIMDTIPFSSIEEGGAAPTPTSFAQSFDELFFSFTSLKGKEPITYXXXXXXXXXXXXXXXXXQPLALKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVAAVEPSHNVPLAEQEKVILQFGKIGKDIFTMDY 445
            Y+ N L++RGPRRM C +              P   S A    +   S +S                           PLAL+NKAPRWHE LQCWCLNF GRVTVASVKNFQLVA    S    +A++E VILQFGKI  D FTMDY
Sbjct:  240 YKFNFLKSRGPRRMQCNIQ------------CPVGQSTASDPLKKLISTSS---------------------------PLALRNKAPRWHEHLQCWCLNFHGRVTVASVKNFQLVAPAGTSDPWGIADEETVILQFGKIEDDAFTMDY 348          
The following BLAST results are available for this feature:
BLAST of CX289112 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
TLP3_ORYSJ5.970e-3448.33Tubby-like F-box protein 3 OS=Oryza sativa subsp. ... [more]
TLP1_ARATH5.970e-3446.24Tubby-like F-box protein 1 OS=Arabidopsis thaliana... [more]
TLP9_ARATH8.621e-3351.32Tubby-like F-box protein 9 OS=Arabidopsis thaliana... [more]
TLP11_ARATH8.621e-3350.00Tubby-like F-box protein 11 OS=Arabidopsis thalian... [more]
TLP7_ORYSJ1.921e-3243.59Tubby-like F-box protein 7 OS=Oryza sativa subsp. ... [more]
TLP12_ORYSJ4.278e-3244.86Tubby-like F-box protein 12 OS=Oryza sativa subsp.... [more]
TLP5_ARATH1.626e-3146.75Tubby-like F-box protein 5 OS=Arabidopsis thaliana... [more]
TLP7_ARATH3.879e-2543.92Tubby-like F-box protein 7 OS=Arabidopsis thaliana... [more]
TLP10_ORYSJ3.879e-2543.92Tubby-like F-box protein 10 OS=Oryza sativa subsp.... [more]
TLP9_ORYSJ1.474e-2445.27Tubby-like F-box protein 9 OS=Oryza sativa subsp. ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC02009C06SK IF1 Citrus clementina cDNA clone C02009C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289112 ID=CX289112; Name=CX289112; organism=Citrus clementina; type=EST; length=453bp
CTATGAGCTTAATGTTCTCCGCACTAGGGGACCAAGGAGAATGAATTGCA
TCATGGACACTATTCCTTTCTCTTCCATTGAGGAAGGGGGGGCAGCCCCA
ACACCAACATCTTTCGCACAGTCATTTGATGAGCTATTTTTCTCCTTCAC
AAGTTTGAAAGGTAAGGAACCAATCACCTATAGTAGCTCTCCAAGCCCCT
CACTGTCACTGGCATCAACTCCAGGCTCTCCACAGCCACTGGCTCTTAAA
AATAAGGCTCCAAGATGGCATGAGCAGCTACAATGTTGGTGCCTAAATTT
TCGAGGGCGTGTCACAGTGGCTTCTGTTAAGAATTTCCAACTTGTGGCAG
CTGTTGAGCCATCTCACAATGTGCCTCTAGCAGAACAAGAAAAGGTAATT
CTGCAATTTGGAAAGATCGGAAAAGATATCTTCACTATGGATTATCACTA
CCC
back to top