CX289112
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX289112 vs. ExPASy Swiss-Prot
Match: TLP1_ORYSJ (Tubby-like F-box protein 1 OS=Oryza sativa subsp. japonica GN=TULP1 PE=2 SV=1) HSP 1 Score: 109.768 bits (273), Expect = 5.601e-24 Identity = 61/148 (41.22%), Postives = 79/148 (53.38%), Query Frame = 2 Query: 2 YELNVLRTRGPRRMNCIMDTIPFSSIEEGGAAPTPTSFAQSFDELFFSFTSLKGKEPITYXXXXXXXXXXXXXXXXXQPLALKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVAAVEPSHNVPLAEQEKVILQFGKIGKDIFTMDY 445 Y+ N+L++RGPRRM C ++ S E + + K ++P L+NKAPRWHE LQCWCLNF GRVTVASVKNFQLVAA +P+ ++E V+LQFGK+ +IFTMDY Sbjct: 223 YKYNLLKSRGPRRMYCALE-------------------CPSTQETWENCLKTKFRKPTGNT-------------------VLRNKAPRWHEHLQCWCLNFHGRVTVASVKNFQLVAAADPNDPASSKDEETVLLQFGKVDDNIFTMDY 332
BLAST of CX289112 vs. ExPASy Swiss-Prot
Match: TLP2_ORYSJ (Tubby-like F-box protein 2 OS=Oryza sativa subsp. japonica GN=TULP2 PE=2 SV=1) HSP 1 Score: 95.9005 bits (237), Expect = 8.369e-20 Identity = 61/148 (41.22%), Postives = 71/148 (47.97%), Query Frame = 2 Query: 2 YELNVLRTRGPRRMNCIMDTIPFSSIEEGGAAPTPTSFAQSFDELFFSFTSLKGKEPITYXXXXXXXXXXXXXXXXXQPLALKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVAAVEPSHNVPLAEQEKVILQFGKIGKDIFTMDY 445 Y+ ++LR RGPRRM+C + G A P Q L S S L L +K P WHE LQCWCLNF GRV VASVKNFQL+A VEP + V+LQFGKI D+FTMDY Sbjct: 239 YKYSLLRPRGPRRMSCSVQCPVLK-----GTAVDP----QDGKRLSNSIPS---------------------------SLVLNSKVPSWHEHLQCWCLNFHGRVMVASVKNFQLIAPVEPGE----PSDKTVVLQFGKIDDDVFTMDY 346
BLAST of CX289112 vs. ExPASy Swiss-Prot
Match: TUB_HUMAN (Tubby protein homolog OS=Homo sapiens GN=TUB PE=1 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 4.448e-13 Identity = 47/150 (31.33%), Postives = 74/150 (49.33%), Query Frame = 2 Query: 2 YELNVLRTRGPRRMNCIMDTIPFSSIEEGGAAPTPTSFAQSFDELFFSFTSLKGKEPITYXXXXXXXXXXXXXXXXXQPLALKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVAAVEPSHNVPLAEQEKVILQFGKIGKDIFTMDYHY 451 YE NVL +GPR+M+ I +P ++ + P ++ E + K E I + L+NK P W++ Q + LNF GRVT ASVKNFQ++ +P + +++QFG++ +D+FTMDY+Y Sbjct: 372 YETNVLGFKGPRKMSVI---VPGMNMVHERVSIRP----RNEHETLLARWQNKNTESI---------------------IELQNKTPVWNDDTQSYVLNFHGRVTQASVKNFQIIHGNDPDY---------IVMQFGRVAEDVFTMDYNY 484
BLAST of CX289112 vs. ExPASy Swiss-Prot
Match: TUB_RAT (Tubby protein homolog OS=Rattus norvegicus GN=Tub PE=2 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 5.809e-13 Identity = 47/150 (31.33%), Postives = 73/150 (48.67%), Query Frame = 2 Query: 2 YELNVLRTRGPRRMNCIMDTIPFSSIEEGGAAPTPTSFAQSFDELFFSFTSLKGKEPITYXXXXXXXXXXXXXXXXXQPLALKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVAAVEPSHNVPLAEQEKVILQFGKIGKDIFTMDYHY 451 YE NVL +GPR+M+ I +P ++ P ++ E + K E I + L+NK P W++ Q + LNF GRVT ASVKNFQ++ +P + +++QFG++ +D+FTMDY+Y Sbjct: 371 YETNVLGFKGPRKMSVI---VPGMNMVHERVCIRP----RNEHETLLARWQNKNTESI---------------------IELQNKTPVWNDDTQSYVLNFHGRVTQASVKNFQIIHGNDPDY---------IVMQFGRVAEDVFTMDYNY 483
BLAST of CX289112 vs. ExPASy Swiss-Prot
Match: TUB_MOUSE (Tubby protein OS=Mus musculus GN=Tub PE=1 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 5.809e-13 Identity = 47/150 (31.33%), Postives = 73/150 (48.67%), Query Frame = 2 Query: 2 YELNVLRTRGPRRMNCIMDTIPFSSIEEGGAAPTPTSFAQSFDELFFSFTSLKGKEPITYXXXXXXXXXXXXXXXXXQPLALKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVAAVEPSHNVPLAEQEKVILQFGKIGKDIFTMDYHY 451 YE NVL +GPR+M+ I +P ++ P ++ E + K E I + L+NK P W++ Q + LNF GRVT ASVKNFQ++ +P + +++QFG++ +D+FTMDY+Y Sbjct: 371 YETNVLGFKGPRKMSVI---VPGMNMVHERVCIRP----RNEHETLLARWQNKNTESI---------------------IELQNKTPVWNDDTQSYVLNFHGRVTQASVKNFQIIHGNDPDY---------IVMQFGRVAEDVFTMDYNY 483
BLAST of CX289112 vs. ExPASy Swiss-Prot
Match: TULP3_MOUSE (Tubby-related protein 3 OS=Mus musculus GN=Tulp3 PE=1 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 9.909e-13 Identity = 50/157 (31.85%), Postives = 71/157 (45.22%), Query Frame = 2 Query: 2 YELNVLRTRGPRRMNCIM-------DTIPFSSIEEGGAAPTPTSFAQSFDELFFSFTSLKGKEPITYXXXXXXXXXXXXXXXXXQPLALKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVAAVEPSHNVPLAEQEKVILQFGKIGKDIFTMDYHY 451 YE NVL +GPR+M+ I+ + IPF E E S K E + + L NKAP W++ Q + LNF GRVT ASVKNFQ+V +P + +++QFG++ D+FT+DY+Y Sbjct: 326 YETNVLGFKGPRKMSVIIPGMNMNHERIPFRPRNE--------------HESLLSKWQNKSMENL---------------------IELHNKAPVWNDDTQSYVLNFHGRVTQASVKNFQIVHGNDPDY---------IVMQFGRVADDVFTLDYNY 438
BLAST of CX289112 vs. ExPASy Swiss-Prot
Match: TULP1_HUMAN (Tubby-related protein 1 OS=Homo sapiens GN=TULP1 PE=1 SV=3) HSP 1 Score: 72.0182 bits (175), Expect = 1.294e-12 Identity = 53/150 (35.33%), Postives = 72/150 (48.00%), Query Frame = 2 Query: 2 YELNVLRTRGPRRMNCIMDTIPFSSIEEGGAAPTPTSFAQSFDELFFSFTSLKGKEPITYXXXXXXXXXXXXXXXXXQPLALKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVAAVEPSHNVPLAEQEKVILQFGKIGKDIFTMDYHY 451 YE NVL RGPRRM I IP S E P + + D L + + K E + + L NK P W++ + LNF+GRVT ASVKNFQ+V A +P + ++LQFG++ +D FT+DY Y Sbjct: 408 YETNVLGFRGPRRMTVI---IPGMSAENERVPIRPRNAS---DGLLVRWQN-KTLESL---------------------IELHNKPPVWNDDSGSYTLNFQGRVTQASVKNFQIVHADDPDY---------IVLQFGRVAEDAFTLDYRY 520
BLAST of CX289112 vs. ExPASy Swiss-Prot
Match: TULP3_HUMAN (Tubby-related protein 3 OS=Homo sapiens GN=TULP3 PE=1 SV=2) HSP 1 Score: 71.633 bits (174), Expect = 1.690e-12 Identity = 33/69 (47.83%), Postives = 46/69 (66.67%), Query Frame = 2 Query: 245 LKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVAAVEPSHNVPLAEQEKVILQFGKIGKDIFTMDYHY 451 L NKAP W+ Q + LNFRGRVT ASVKNFQ+V +P + +++QFG++ D+FT+DY+Y Sbjct: 361 LHNKAPVWNSDTQSYVLNFRGRVTQASVKNFQIVHKNDPDY---------IVMQFGRVADDVFTLDYNY 420
BLAST of CX289112 vs. ExPASy Swiss-Prot
Match: TULP2_MOUSE (Tubby-related protein 2 OS=Mus musculus GN=Tulp2 PE=2 SV=3) HSP 1 Score: 71.2478 bits (173), Expect = 2.208e-12 Identity = 35/71 (49.30%), Postives = 46/71 (64.79%), Query Frame = 2 Query: 239 LALKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVAAVEPSHNVPLAEQEKVILQFGKIGKDIFTMDYHY 451 L L+NKAP W ++ + LNF GRVT ASVKNFQ+V EP H ++LQFG++ +IFTMD+ Y Sbjct: 479 LLLQNKAPSWSDESGAYVLNFHGRVTRASVKNFQIVHPDEPDH---------LVLQFGRVAPNIFTMDFRY 540
BLAST of CX289112 vs. ExPASy Swiss-Prot
Match: TULP1_MOUSE (Tubby-related protein 1 OS=Mus musculus GN=Tulp1 PE=1 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 3.766e-12 Identity = 52/150 (34.67%), Postives = 72/150 (48.00%), Query Frame = 2 Query: 2 YELNVLRTRGPRRMNCIMDTIPFSSIEEGGAAPTPTSFAQSFDELFFSFTSLKGKEPITYXXXXXXXXXXXXXXXXXQPLALKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVAAVEPSHNVPLAEQEKVILQFGKIGKDIFTMDYHY 451 YE NVL RGPRRM I IP + + P + + D L + + K E + + L NK P W+E + LNF+GRVT ASVKNFQ+V A +P + ++LQFG++ +D FT+DY Y Sbjct: 409 YETNVLGFRGPRRMTVI---IPGMNSDNERVPIRPRNAS---DGLLVRWQN-KTLESL---------------------IELHNKPPIWNEDSGSYTLNFQGRVTQASVKNFQIVHADDPDY---------IVLQFGRVAEDAFTLDYRY 521 The following BLAST results are available for this feature:
BLAST of CX289112 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 32
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Sequences
The
following sequences are available for this feature:
EST sequence >CX289112 ID=CX289112; Name=CX289112; organism=Citrus clementina; type=EST; length=453bpback to top |