CX289112

Overview
NameCX289112
Unique NameCX289112
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length453
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289112 vs. ExPASy Swiss-Prot
Match: TLP1_ORYSJ (Tubby-like F-box protein 1 OS=Oryza sativa subsp. japonica GN=TULP1 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 5.601e-24
Identity = 61/148 (41.22%), Postives = 79/148 (53.38%), Query Frame = 2
Query:    2 YELNVLRTRGPRRMNCIMDTIPFSSIEEGGAAPTPTSFAQSFDELFFSFTSLKGKEPITYXXXXXXXXXXXXXXXXXQPLALKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVAAVEPSHNVPLAEQEKVILQFGKIGKDIFTMDY 445
            Y+ N+L++RGPRRM C ++                     S  E + +    K ++P                        L+NKAPRWHE LQCWCLNF GRVTVASVKNFQLVAA +P+      ++E V+LQFGK+  +IFTMDY
Sbjct:  223 YKYNLLKSRGPRRMYCALE-------------------CPSTQETWENCLKTKFRKPTGNT-------------------VLRNKAPRWHEHLQCWCLNFHGRVTVASVKNFQLVAAADPNDPASSKDEETVLLQFGKVDDNIFTMDY 332          
BLAST of CX289112 vs. ExPASy Swiss-Prot
Match: TLP2_ORYSJ (Tubby-like F-box protein 2 OS=Oryza sativa subsp. japonica GN=TULP2 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 8.369e-20
Identity = 61/148 (41.22%), Postives = 71/148 (47.97%), Query Frame = 2
Query:    2 YELNVLRTRGPRRMNCIMDTIPFSSIEEGGAAPTPTSFAQSFDELFFSFTSLKGKEPITYXXXXXXXXXXXXXXXXXQPLALKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVAAVEPSHNVPLAEQEKVILQFGKIGKDIFTMDY 445
            Y+ ++LR RGPRRM+C +           G A  P    Q    L  S  S                            L L +K P WHE LQCWCLNF GRV VASVKNFQL+A VEP         + V+LQFGKI  D+FTMDY
Sbjct:  239 YKYSLLRPRGPRRMSCSVQCPVLK-----GTAVDP----QDGKRLSNSIPS---------------------------SLVLNSKVPSWHEHLQCWCLNFHGRVMVASVKNFQLIAPVEPGE----PSDKTVVLQFGKIDDDVFTMDY 346          
BLAST of CX289112 vs. ExPASy Swiss-Prot
Match: TUB_HUMAN (Tubby protein homolog OS=Homo sapiens GN=TUB PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 4.448e-13
Identity = 47/150 (31.33%), Postives = 74/150 (49.33%), Query Frame = 2
Query:    2 YELNVLRTRGPRRMNCIMDTIPFSSIEEGGAAPTPTSFAQSFDELFFSFTSLKGKEPITYXXXXXXXXXXXXXXXXXQPLALKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVAAVEPSHNVPLAEQEKVILQFGKIGKDIFTMDYHY 451
            YE NVL  +GPR+M+ I   +P  ++     +  P    ++  E   +    K  E I                     + L+NK P W++  Q + LNF GRVT ASVKNFQ++   +P +         +++QFG++ +D+FTMDY+Y
Sbjct:  372 YETNVLGFKGPRKMSVI---VPGMNMVHERVSIRP----RNEHETLLARWQNKNTESI---------------------IELQNKTPVWNDDTQSYVLNFHGRVTQASVKNFQIIHGNDPDY---------IVMQFGRVAEDVFTMDYNY 484          
BLAST of CX289112 vs. ExPASy Swiss-Prot
Match: TUB_RAT (Tubby protein homolog OS=Rattus norvegicus GN=Tub PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 5.809e-13
Identity = 47/150 (31.33%), Postives = 73/150 (48.67%), Query Frame = 2
Query:    2 YELNVLRTRGPRRMNCIMDTIPFSSIEEGGAAPTPTSFAQSFDELFFSFTSLKGKEPITYXXXXXXXXXXXXXXXXXQPLALKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVAAVEPSHNVPLAEQEKVILQFGKIGKDIFTMDYHY 451
            YE NVL  +GPR+M+ I   +P  ++        P    ++  E   +    K  E I                     + L+NK P W++  Q + LNF GRVT ASVKNFQ++   +P +         +++QFG++ +D+FTMDY+Y
Sbjct:  371 YETNVLGFKGPRKMSVI---VPGMNMVHERVCIRP----RNEHETLLARWQNKNTESI---------------------IELQNKTPVWNDDTQSYVLNFHGRVTQASVKNFQIIHGNDPDY---------IVMQFGRVAEDVFTMDYNY 483          
BLAST of CX289112 vs. ExPASy Swiss-Prot
Match: TUB_MOUSE (Tubby protein OS=Mus musculus GN=Tub PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 5.809e-13
Identity = 47/150 (31.33%), Postives = 73/150 (48.67%), Query Frame = 2
Query:    2 YELNVLRTRGPRRMNCIMDTIPFSSIEEGGAAPTPTSFAQSFDELFFSFTSLKGKEPITYXXXXXXXXXXXXXXXXXQPLALKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVAAVEPSHNVPLAEQEKVILQFGKIGKDIFTMDYHY 451
            YE NVL  +GPR+M+ I   +P  ++        P    ++  E   +    K  E I                     + L+NK P W++  Q + LNF GRVT ASVKNFQ++   +P +         +++QFG++ +D+FTMDY+Y
Sbjct:  371 YETNVLGFKGPRKMSVI---VPGMNMVHERVCIRP----RNEHETLLARWQNKNTESI---------------------IELQNKTPVWNDDTQSYVLNFHGRVTQASVKNFQIIHGNDPDY---------IVMQFGRVAEDVFTMDYNY 483          
BLAST of CX289112 vs. ExPASy Swiss-Prot
Match: TULP3_MOUSE (Tubby-related protein 3 OS=Mus musculus GN=Tulp3 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 9.909e-13
Identity = 50/157 (31.85%), Postives = 71/157 (45.22%), Query Frame = 2
Query:    2 YELNVLRTRGPRRMNCIM-------DTIPFSSIEEGGAAPTPTSFAQSFDELFFSFTSLKGKEPITYXXXXXXXXXXXXXXXXXQPLALKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVAAVEPSHNVPLAEQEKVILQFGKIGKDIFTMDYHY 451
            YE NVL  +GPR+M+ I+       + IPF    E               E   S    K  E +                     + L NKAP W++  Q + LNF GRVT ASVKNFQ+V   +P +         +++QFG++  D+FT+DY+Y
Sbjct:  326 YETNVLGFKGPRKMSVIIPGMNMNHERIPFRPRNE--------------HESLLSKWQNKSMENL---------------------IELHNKAPVWNDDTQSYVLNFHGRVTQASVKNFQIVHGNDPDY---------IVMQFGRVADDVFTLDYNY 438          
BLAST of CX289112 vs. ExPASy Swiss-Prot
Match: TULP1_HUMAN (Tubby-related protein 1 OS=Homo sapiens GN=TULP1 PE=1 SV=3)

HSP 1 Score: 72.0182 bits (175), Expect = 1.294e-12
Identity = 53/150 (35.33%), Postives = 72/150 (48.00%), Query Frame = 2
Query:    2 YELNVLRTRGPRRMNCIMDTIPFSSIEEGGAAPTPTSFAQSFDELFFSFTSLKGKEPITYXXXXXXXXXXXXXXXXXQPLALKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVAAVEPSHNVPLAEQEKVILQFGKIGKDIFTMDYHY 451
            YE NVL  RGPRRM  I   IP  S E       P + +   D L   + + K  E +                     + L NK P W++    + LNF+GRVT ASVKNFQ+V A +P +         ++LQFG++ +D FT+DY Y
Sbjct:  408 YETNVLGFRGPRRMTVI---IPGMSAENERVPIRPRNAS---DGLLVRWQN-KTLESL---------------------IELHNKPPVWNDDSGSYTLNFQGRVTQASVKNFQIVHADDPDY---------IVLQFGRVAEDAFTLDYRY 520          
BLAST of CX289112 vs. ExPASy Swiss-Prot
Match: TULP3_HUMAN (Tubby-related protein 3 OS=Homo sapiens GN=TULP3 PE=1 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 1.690e-12
Identity = 33/69 (47.83%), Postives = 46/69 (66.67%), Query Frame = 2
Query:  245 LKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVAAVEPSHNVPLAEQEKVILQFGKIGKDIFTMDYHY 451
            L NKAP W+   Q + LNFRGRVT ASVKNFQ+V   +P +         +++QFG++  D+FT+DY+Y
Sbjct:  361 LHNKAPVWNSDTQSYVLNFRGRVTQASVKNFQIVHKNDPDY---------IVMQFGRVADDVFTLDYNY 420          
BLAST of CX289112 vs. ExPASy Swiss-Prot
Match: TULP2_MOUSE (Tubby-related protein 2 OS=Mus musculus GN=Tulp2 PE=2 SV=3)

HSP 1 Score: 71.2478 bits (173), Expect = 2.208e-12
Identity = 35/71 (49.30%), Postives = 46/71 (64.79%), Query Frame = 2
Query:  239 LALKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVAAVEPSHNVPLAEQEKVILQFGKIGKDIFTMDYHY 451
            L L+NKAP W ++   + LNF GRVT ASVKNFQ+V   EP H         ++LQFG++  +IFTMD+ Y
Sbjct:  479 LLLQNKAPSWSDESGAYVLNFHGRVTRASVKNFQIVHPDEPDH---------LVLQFGRVAPNIFTMDFRY 540          
BLAST of CX289112 vs. ExPASy Swiss-Prot
Match: TULP1_MOUSE (Tubby-related protein 1 OS=Mus musculus GN=Tulp1 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.766e-12
Identity = 52/150 (34.67%), Postives = 72/150 (48.00%), Query Frame = 2
Query:    2 YELNVLRTRGPRRMNCIMDTIPFSSIEEGGAAPTPTSFAQSFDELFFSFTSLKGKEPITYXXXXXXXXXXXXXXXXXQPLALKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVAAVEPSHNVPLAEQEKVILQFGKIGKDIFTMDYHY 451
            YE NVL  RGPRRM  I   IP  + +       P + +   D L   + + K  E +                     + L NK P W+E    + LNF+GRVT ASVKNFQ+V A +P +         ++LQFG++ +D FT+DY Y
Sbjct:  409 YETNVLGFRGPRRMTVI---IPGMNSDNERVPIRPRNAS---DGLLVRWQN-KTLESL---------------------IELHNKPPIWNEDSGSYTLNFQGRVTQASVKNFQIVHADDPDY---------IVLQFGRVAEDAFTLDYRY 521          
The following BLAST results are available for this feature:
BLAST of CX289112 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
TLP1_ORYSJ5.601e-2441.22Tubby-like F-box protein 1 OS=Oryza sativa subsp. ... [more]
TLP2_ORYSJ8.369e-2041.22Tubby-like F-box protein 2 OS=Oryza sativa subsp. ... [more]
TUB_HUMAN4.448e-1331.33Tubby protein homolog OS=Homo sapiens GN=TUB PE=1 ... [more]
TUB_RAT5.809e-1331.33Tubby protein homolog OS=Rattus norvegicus GN=Tub ... [more]
TUB_MOUSE5.809e-1331.33Tubby protein OS=Mus musculus GN=Tub PE=1 SV=1[more]
TULP3_MOUSE9.909e-1331.85Tubby-related protein 3 OS=Mus musculus GN=Tulp3 P... [more]
TULP1_HUMAN1.294e-1235.33Tubby-related protein 1 OS=Homo sapiens GN=TULP1 P... [more]
TULP3_HUMAN1.690e-1247.83Tubby-related protein 3 OS=Homo sapiens GN=TULP3 P... [more]
TULP2_MOUSE2.208e-1249.30Tubby-related protein 2 OS=Mus musculus GN=Tulp2 P... [more]
TULP1_MOUSE3.766e-1234.67Tubby-related protein 1 OS=Mus musculus GN=Tulp1 P... [more]

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Properties
Property NameValue
Genbank descriptionC02009C06SK IF1 Citrus clementina cDNA clone C02009C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289112 ID=CX289112; Name=CX289112; organism=Citrus clementina; type=EST; length=453bp
CTATGAGCTTAATGTTCTCCGCACTAGGGGACCAAGGAGAATGAATTGCA
TCATGGACACTATTCCTTTCTCTTCCATTGAGGAAGGGGGGGCAGCCCCA
ACACCAACATCTTTCGCACAGTCATTTGATGAGCTATTTTTCTCCTTCAC
AAGTTTGAAAGGTAAGGAACCAATCACCTATAGTAGCTCTCCAAGCCCCT
CACTGTCACTGGCATCAACTCCAGGCTCTCCACAGCCACTGGCTCTTAAA
AATAAGGCTCCAAGATGGCATGAGCAGCTACAATGTTGGTGCCTAAATTT
TCGAGGGCGTGTCACAGTGGCTTCTGTTAAGAATTTCCAACTTGTGGCAG
CTGTTGAGCCATCTCACAATGTGCCTCTAGCAGAACAAGAAAAGGTAATT
CTGCAATTTGGAAAGATCGGAAAAGATATCTTCACTATGGATTATCACTA
CCC
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