CX289112

Overview
NameCX289112
Unique NameCX289112
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length453
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289112 vs. ExPASy Swiss-Prot
Match: TUB1_CAEEL (Tubby protein homolog 1 OS=Caenorhabditis elegans GN=tub-1 PE=1 SV=3)

HSP 1 Score: 70.0922 bits (170), Expect = 4.918e-12
Identity = 49/150 (32.67%), Postives = 68/150 (45.33%), Query Frame = 2
Query:    2 YELNVLRTRGPRRMNCIMDTIPFSSIEEGGAAPTPTSFAQSFDELFFSFTSLKGKEPITYXXXXXXXXXXXXXXXXXQPLALKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVAAVEPSHNVPLAEQEKVILQFGKIGKDIFTMDYHY 451
            YE NVL  +GPR+M  +M  I     E   A   P    Q    L   +  L   + +                       L NK+P+W+++ Q + LNF GRVT ASVKNFQ++    P         E +++QFG+I  D FTMD+ Y
Sbjct:  287 YETNVLGFKGPRKMTIVMPGIE-PPTENRPAVRCPVRPIQDKHTLLERYR-LNDLDSLKI---------------------LSNKSPQWNDETQSYVLNFHGRVTQASVKNFQIIHQSSP---------EYIVMQFGRISDDEFTMDFRY 404          
BLAST of CX289112 vs. ExPASy Swiss-Prot
Match: TULP2_HUMAN (Tubby-related protein 2 OS=Homo sapiens GN=TULP2 PE=2 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 2.441e-11
Identity = 35/69 (50.72%), Postives = 45/69 (65.22%), Query Frame = 2
Query:  239 LALKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVAAVEPSHNVPLAEQEKVILQFGKIGKDIFTMDY 445
            L L NK P W ++   + LNF GRVT ASVKNFQ+   V+P H      QE ++LQFG++G D FTMD+
Sbjct:  443 LLLHNKTPSWDKENGVYTLNFHGRVTRASVKNFQI---VDPKH------QEHLVLQFGRVGPDTFTMDF 502          
The following BLAST results are available for this feature:
BLAST of CX289112 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
TUB1_CAEEL4.918e-1232.67Tubby protein homolog 1 OS=Caenorhabditis elegans ... [more]
TULP2_HUMAN2.441e-1150.72Tubby-related protein 2 OS=Homo sapiens GN=TULP2 P... [more]

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Properties
Property NameValue
Genbank descriptionC02009C06SK IF1 Citrus clementina cDNA clone C02009C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289112 ID=CX289112; Name=CX289112; organism=Citrus clementina; type=EST; length=453bp
CTATGAGCTTAATGTTCTCCGCACTAGGGGACCAAGGAGAATGAATTGCA
TCATGGACACTATTCCTTTCTCTTCCATTGAGGAAGGGGGGGCAGCCCCA
ACACCAACATCTTTCGCACAGTCATTTGATGAGCTATTTTTCTCCTTCAC
AAGTTTGAAAGGTAAGGAACCAATCACCTATAGTAGCTCTCCAAGCCCCT
CACTGTCACTGGCATCAACTCCAGGCTCTCCACAGCCACTGGCTCTTAAA
AATAAGGCTCCAAGATGGCATGAGCAGCTACAATGTTGGTGCCTAAATTT
TCGAGGGCGTGTCACAGTGGCTTCTGTTAAGAATTTCCAACTTGTGGCAG
CTGTTGAGCCATCTCACAATGTGCCTCTAGCAGAACAAGAAAAGGTAATT
CTGCAATTTGGAAAGATCGGAAAAGATATCTTCACTATGGATTATCACTA
CCC
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