CX289122

Overview
NameCX289122
Unique NameCX289122
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length430
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig7570 contig Ccv1_Contig7570:474..903. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX289122 vs. ExPASy Swiss-Prot
Match: CADH1_EUCGU (Probable cinnamyl alcohol dehydrogenase 1 OS=Eucalyptus gunnii GN=CAD1 PE=3 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 1.463e-41
Identity = 85/142 (59.86%), Postives = 96/142 (67.61%), Query Frame = 3
Query:    3 KFVVKIPDGMALEQAAPLLCAGVTVFSPLSHFGLKQSXXXXXXXXXXXXXXXXXXXAKAMGHHVTVISSSDKKRVEAMEHLGADQYLVSSDATRMQEAADSLDYIIDTVPANHPLEPYXXXXXXXXXXXXTGVINTPMQFLT 428
            +FVVKIPDG+  EQAAPL+CAGVTV+ PL  FGLKQS                   AKAMGHHVTVISSSDKKR EA+EHLGAD YLVSSD   M+EA DSLDY+ DT+P  HPLEPY            TGVIN P+QF++
Sbjct:  144 RFVVKIPDGLESEQAAPLMCAGVTVYRPLVRFGLKQSGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKKRTEALEHLGADAYLVSSDENGMKEATDSLDYVFDTIPVVHPLEPYLALLKLDGKLILTGVINAPLQFIS 285          
BLAST of CX289122 vs. ExPASy Swiss-Prot
Match: CADH_MAIZE (Probable cinnamyl alcohol dehydrogenase OS=Zea mays GN=CAD PE=2 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 4.707e-40
Identity = 86/142 (60.56%), Postives = 93/142 (65.49%), Query Frame = 3
Query:    3 KFVVKIPDGMALEQAAPLLCAGVTVFSPLSHFGLKQSXXXXXXXXXXXXXXXXXXXAKAMGHHVTVISSSDKKRVEAMEHLGADQYLVSSDATRMQEAADSLDYIIDTVPANHPLEPYXXXXXXXXXXXXTGVINTPMQFLT 428
            KFVVKIP G+A EQAAPLLCAGVTV+SPL HFGL                      AKAMGHHVTVISSS KKR EAM+HLGAD YLVSSDA  M  AADSLDYIIDTVP +HPLEPY             GVI  P+ F++
Sbjct:  144 KFVVKIPAGLAPEQAAPLLCAGVTVYSPLKHFGLTNPGLRGGILGLGGVGHMGVKVAKAMGHHVTVISSSSKKRAEAMDHLGADAYLVSSDAAAMAAAADSLDYIIDTVPVHHPLEPYLALLKLDGKLVLLGVIGEPLSFVS 285          
BLAST of CX289122 vs. ExPASy Swiss-Prot
Match: CADH_EUCBO (Probable cinnamyl alcohol dehydrogenase OS=Eucalyptus botryoides GN=CAD1 PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 5.204e-39
Identity = 84/142 (59.15%), Postives = 95/142 (66.90%), Query Frame = 3
Query:    3 KFVVKIPDGMALEQAAPLLCAGVTVFSPLSHFGLKQSXXXXXXXXXXXXXXXXXXXAKAMGHHVTVISSSDKKRVEAMEHLGADQYLVSSDATRMQEAADSLDYIIDTVPANHPLEPYXXXXXXXXXXXXTGVINTPMQFLT 428
            +FVVKIPDG+  EQ A ++CAGVTV+SPL  FGLKQS                   AKAMGHHVTVISSSDKKR EA+EHLGAD YLVSSD   M+EA DSLDYI DT+P  HPLEPY            TGVIN P+QF++
Sbjct:  144 RFVVKIPDGLESEQDA-VMCAGVTVYSPLVRFGLKQSGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKKRTEALEHLGADAYLVSSDENGMKEATDSLDYIFDTIPVVHPLEPYLALLKLDGKLILTGVINAPLQFIS 284          
BLAST of CX289122 vs. ExPASy Swiss-Prot
Match: CADH_SACOF (Probable cinnamyl alcohol dehydrogenase OS=Saccharum officinarum GN=CAD PE=2 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 1.978e-38
Identity = 84/142 (59.15%), Postives = 92/142 (64.79%), Query Frame = 3
Query:    3 KFVVKIPDGMALEQAAPLLCAGVTVFSPLSHFGLKQSXXXXXXXXXXXXXXXXXXXAKAMGHHVTVISSSDKKRVEAMEHLGADQYLVSSDATRMQEAADSLDYIIDTVPANHPLEPYXXXXXXXXXXXXTGVINTPMQFLT 428
            KFV+KIP G+A EQAAPLLCAGVTV+SPL  FGL                      AKAMGHHVTVISSS KKR EAM+HLGAD YLVSSDA  M  AADSLDYIIDTVP +HPLEPY             GVI  P+ F++
Sbjct:  144 KFVMKIPAGLAPEQAAPLLCAGVTVYSPLKAFGLTTPGLRGAILGLGGVGHMGVKVAKAMGHHVTVISSSSKKRAEAMDHLGADAYLVSSDAAAMAAAADSLDYIIDTVPVHHPLEPYLALLKLDGKHVLLGVIGEPLSFVS 285          
BLAST of CX289122 vs. ExPASy Swiss-Prot
Match: CADH_LOLPR (Probable cinnamyl alcohol dehydrogenase OS=Lolium perenne PE=2 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 2.583e-38
Identity = 83/142 (58.45%), Postives = 91/142 (64.08%), Query Frame = 3
Query:    3 KFVVKIPDGMALEQAAPLLCAGVTVFSPLSHFGLKQSXXXXXXXXXXXXXXXXXXXAKAMGHHVTVISSSDKKRVEAMEHLGADQYLVSSDATRMQEAADSLDYIIDTVPANHPLEPYXXXXXXXXXXXXTGVINTPMQFLT 428
            KFVVKIP G+A EQAAPLLCAGVTV+SPL HFGL                      AK+MGHHVTVISSSDKKR EAM+ LGAD YLVSSD  +M  A DSLDYIIDTVP  HPLEPY             GVI  P+ F++
Sbjct:  145 KFVVKIPAGLAPEQAAPLLCAGVTVYSPLKHFGLMTPGLRGGILGLGGVGHMGVKVAKSMGHHVTVISSSDKKRAEAMDDLGADDYLVSSDEAQMAAAMDSLDYIIDTVPVKHPLEPYLALLKMDGKLVLMGVIGEPLSFVS 286          
BLAST of CX289122 vs. ExPASy Swiss-Prot
Match: CADH2_ORYSJ (Cinnamyl alcohol dehydrogenase 2 OS=Oryza sativa subsp. japonica GN=CAD2 PE=1 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 9.815e-38
Identity = 82/142 (57.75%), Postives = 92/142 (64.79%), Query Frame = 3
Query:    3 KFVVKIPDGMALEQAAPLLCAGVTVFSPLSHFGLKQSXXXXXXXXXXXXXXXXXXXAKAMGHHVTVISSSDKKRVEAMEHLGADQYLVSSDATRMQEAADSLDYIIDTVPANHPLEPYXXXXXXXXXXXXTGVINTPMQFLT 428
            KFVVKIP G+A EQAAPLLCAG+TV+SPL HFGL                      AK+MGHHVTVISSS +KR EAM+ LGAD YLVSSDA  M  A DSLDYIIDTVP +HPLEPY             GVIN P+ F++
Sbjct:  144 KFVVKIPAGLAPEQAAPLLCAGLTVYSPLKHFGLMSPGLRGGVLGLGGVGHMGVKVAKSMGHHVTVISSSARKRGEAMDDLGADAYLVSSDAAAMAAAGDSLDYIIDTVPVHHPLEPYLALLKLDGKLILMGVINQPLSFIS 285          
BLAST of CX289122 vs. ExPASy Swiss-Prot
Match: CADH7_PICAB (Probable cinnamyl alcohol dehydrogenase 7/8 OS=Picea abies GN=CAD7 PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 7.034e-36
Identity = 76/141 (53.90%), Postives = 92/141 (65.25%), Query Frame = 3
Query:    6 FVVKIPDGMALEQAAPLLCAGVTVFSPLSHFGLKQSXXXXXXXXXXXXXXXXXXXAKAMGHHVTVISSSDKKRVEAMEHLGADQYLVSSDATRMQEAADSLDYIIDTVPANHPLEPYXXXXXXXXXXXXTGVINTPMQFLT 428
            FVV+IP+ + LEQAAPLLCAGVTV+SP+ HFG+ +                    AKA G HVTVISSSDKK+ EA+E LGAD YLVS DA +MQEAA+SLDYI+DT+P  HPLEPY             GV+  P+ F+T
Sbjct:  145 FVVRIPENLPLEQAAPLLCAGVTVYSPMKHFGMTEPGKKCGILGLGGVGHMGVKIAKAFGLHVTVISSSDKKKEEALEVLGADAYLVSKDAEKMQEAAESLDYIMDTIPVAHPLEPYLALLKTNGKLVMLGVVPEPLHFVT 285          
BLAST of CX289122 vs. ExPASy Swiss-Prot
Match: CADH2_PICAB (Probable cinnamyl alcohol dehydrogenase 2 OS=Picea abies GN=CAD2 PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 7.034e-36
Identity = 76/141 (53.90%), Postives = 92/141 (65.25%), Query Frame = 3
Query:    6 FVVKIPDGMALEQAAPLLCAGVTVFSPLSHFGLKQSXXXXXXXXXXXXXXXXXXXAKAMGHHVTVISSSDKKRVEAMEHLGADQYLVSSDATRMQEAADSLDYIIDTVPANHPLEPYXXXXXXXXXXXXTGVINTPMQFLT 428
            FVV+IP+ + LEQAAPLLCAGVTV+SP+ HFG+ +                    AKA G HVTVISSSDKK+ EA+E LGAD YLVS DA +MQEAA+SLDYI+DT+P  HPLEPY             GV+  P+ F+T
Sbjct:  145 FVVRIPENLPLEQAAPLLCAGVTVYSPMKHFGMTEPGKKCGILGLGGVGHMGVKIAKAFGLHVTVISSSDKKKEEALEVLGADAYLVSKDAEKMQEAAESLDYIMDTIPVAHPLEPYLALLKTNGKLVMLGVVPEPLHFVT 285          
BLAST of CX289122 vs. ExPASy Swiss-Prot
Match: CADH_PINTA (Probable cinnamyl alcohol dehydrogenase OS=Pinus taeda PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 7.777e-35
Identity = 75/141 (53.19%), Postives = 89/141 (63.12%), Query Frame = 3
Query:    6 FVVKIPDGMALEQAAPLLCAGVTVFSPLSHFGLKQSXXXXXXXXXXXXXXXXXXXAKAMGHHVTVISSSDKKRVEAMEHLGADQYLVSSDATRMQEAADSLDYIIDTVPANHPLEPYXXXXXXXXXXXXTGVINTPMQFLT 428
            FVV+IP+ + LEQAAPLLCAGVTVFSP+ HF + +                    AKA G HVTVISSSDKK+ EAME LGAD YLVS D  +M EAA+SLDYI+DT+P  HPLEPY             GV+  P+ F+T
Sbjct:  145 FVVRIPENLPLEQAAPLLCAGVTVFSPMKHFAMTEPGKKCGILGLGGVGHLGVKIAKAFGLHVTVISSSDKKKEEAMEVLGADAYLVSKDTEKMMEAAESLDYIMDTIPVAHPLEPYLALLKTNGKLVMLGVVPEPLHFVT 285          
BLAST of CX289122 vs. ExPASy Swiss-Prot
Match: CADH_PINRA (Probable cinnamyl alcohol dehydrogenase OS=Pinus radiata GN=CAD PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 7.777e-35
Identity = 75/141 (53.19%), Postives = 89/141 (63.12%), Query Frame = 3
Query:    6 FVVKIPDGMALEQAAPLLCAGVTVFSPLSHFGLKQSXXXXXXXXXXXXXXXXXXXAKAMGHHVTVISSSDKKRVEAMEHLGADQYLVSSDATRMQEAADSLDYIIDTVPANHPLEPYXXXXXXXXXXXXTGVINTPMQFLT 428
            FVV+IP+ + LEQAAPLLCAGVTVFSP+ HF + +                    AKA G HVTVISSSDKK+ EAME LGAD YLVS D  +M EAA+SLDYI+DT+P  HPLEPY             GV+  P+ F+T
Sbjct:  145 FVVRIPENLPLEQAAPLLCAGVTVFSPMKHFAMTEPGKKCGILGLGGVGHMGVKIAKAFGLHVTVISSSDKKKEEAMEVLGADAYLVSKDTEKMMEAAESLDYIMDTIPVAHPLEPYLALLKTNGKLVMLGVVPEPLHFVT 285          
The following BLAST results are available for this feature:
BLAST of CX289122 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
CADH1_EUCGU1.463e-4159.86Probable cinnamyl alcohol dehydrogenase 1 OS=Eucal... [more]
CADH_MAIZE4.707e-4060.56Probable cinnamyl alcohol dehydrogenase OS=Zea may... [more]
CADH_EUCBO5.204e-3959.15Probable cinnamyl alcohol dehydrogenase OS=Eucalyp... [more]
CADH_SACOF1.978e-3859.15Probable cinnamyl alcohol dehydrogenase OS=Sacchar... [more]
CADH_LOLPR2.583e-3858.45Probable cinnamyl alcohol dehydrogenase OS=Lolium ... [more]
CADH2_ORYSJ9.815e-3857.75Cinnamyl alcohol dehydrogenase 2 OS=Oryza sativa s... [more]
CADH7_PICAB7.034e-3653.90Probable cinnamyl alcohol dehydrogenase 7/8 OS=Pic... [more]
CADH2_PICAB7.034e-3653.90Probable cinnamyl alcohol dehydrogenase 2 OS=Picea... [more]
CADH_PINTA7.777e-3553.19Probable cinnamyl alcohol dehydrogenase OS=Pinus t... [more]
CADH_PINRA7.777e-3553.19Probable cinnamyl alcohol dehydrogenase OS=Pinus r... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC02009D07SK IF1 Citrus clementina cDNA clone C02009D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289122 ID=CX289122; Name=CX289122; organism=Citrus clementina; type=EST; length=430bp
AAAAGTTTGTGGTGAAAATACCAGATGGAATGGCACTGGAGCAGGCGGCA
CCGCTATTGTGTGCTGGTGTGACAGTGTTCAGTCCCCTGAGCCACTTTGG
ATTGAAGCAGAGCGGGCTGAGAGGAGGAATCTTGGGGCTCGGAGGAGTAG
GCCACATGGGGGTTTTGATAGCTAAGGCGATGGGACACCATGTTACTGTG
ATTAGCTCTTCTGATAAGAAAAGAGTGGAAGCTATGGAGCATCTTGGTGC
CGATCAGTACCTTGTCAGCTCCGACGCAACTCGTATGCAAGAAGCCGCTG
ACTCACTTGATTATATCATTGATACCGTACCCGCAAATCACCCTCTGGAG
CCTTACCTTTCGCTGTTGAAGCTTGATGGAAAGTTGATCTTGACGGGTGT
CATTAACACTCCCATGCAGTTTCTTACCCC
back to top