CX289122

Overview
NameCX289122
Unique NameCX289122
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length430
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig7570 contig Ccv1_Contig7570:474..903. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX289122 vs. ExPASy Swiss-Prot
Match: MTDH_FRAAN (Probable mannitol dehydrogenase OS=Fragaria ananassa GN=CAD PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 7.296e-25
Identity = 59/116 (50.86%), Postives = 74/116 (63.79%), Query Frame = 3
Query:    6 FVVKIPDGMALEQAAPLLCAGVTVFSPLSHFGLKQSXXXXXXXXXXXXXXXXXXXAKAMGHHVTVISSSDKKRVEAMEHLGADQYLVSSDATRMQEAADSLDYIIDTVPANHPLEP 353
            F+V+IPD + L+ AAPLLCAG+T +SPL +FGL +                    AKAMG  VTVIS+S KK  EA++HLGAD +LVS D  +MQ A  ++D IIDTV A HPL P
Sbjct:  146 FIVRIPDNLPLDGAAPLLCAGITTYSPLRYFGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPKKEEEALKHLGADSFLVSRDQDQMQAAIGTMDGIIDTVSAQHPLLP 261          
BLAST of CX289122 vs. ExPASy Swiss-Prot
Match: CADH7_ARATH (Cinnamyl alcohol dehydrogenase 7 OS=Arabidopsis thaliana GN=CAD7 PE=1 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 1.797e-23
Identity = 56/116 (48.28%), Postives = 75/116 (64.66%), Query Frame = 3
Query:    6 FVVKIPDGMALEQAAPLLCAGVTVFSPLSHFGLKQSXXXXXXXXXXXXXXXXXXXAKAMGHHVTVISSSDKKRVEAMEHLGADQYLVSSDATRMQEAADSLDYIIDTVPANHPLEP 353
            F+++IPD + L+ AAPLLCAGVTV+SP+ + GL +                    AKAMG  VTVIS+S++KR EA+  LGAD +LVS D  +M++A  ++D IIDTV A HPL P
Sbjct:  144 FIIRIPDNLPLDGAAPLLCAGVTVYSPMKYHGLDKPGMHIGVVGLGGLGHVAVKFAKAMGTKVTVISTSERKRDEAVTRLGADAFLVSRDPKQMKDAMGTMDGIIDTVSATHPLLP 259          
BLAST of CX289122 vs. ExPASy Swiss-Prot
Match: MTDH_MESCR (Probable mannitol dehydrogenase OS=Mesembryanthemum crystallinum GN=ELI3 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 6.829e-23
Identity = 60/138 (43.48%), Postives = 75/138 (54.35%), Query Frame = 3
Query:    6 FVVKIPDGMALEQAAPLLCAGVTVFSPLSHFGLKQSXXXXXXXXXXXXXXXXXXXAKAMGHHVTVISSSDKKRVEAMEHLGADQYLVSSDATRMQEAADSLDYIIDTVPANHPLEPYXXXXXXXXXXXXTGVINTPMQ 419
            F V+IPD MAL+  APLLCAGVTV+SPL HF L +                     KA G  VTVIS+S  K+ EA+  LGAD ++VS +  +MQ A  +LD IIDTV A HPL P              GV + P++
Sbjct:  149 FAVRIPDNMALDATAPLLCAGVTVYSPLKHFELDKPGLHIGVVGLGGLGHMAVKFGKAFGAKVTVISTSPNKKDEAVNRLGADSFVVSREPEQMQSAMGTLDGIIDTVSAAHPLLPLLGLLKSQGKMIMVGVPDKPLE 286          
BLAST of CX289122 vs. ExPASy Swiss-Prot
Match: CADH8_ARATH (Cinnamyl alcohol dehydrogenase 8 OS=Arabidopsis thaliana GN=CAD8 PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.165e-22
Identity = 55/116 (47.41%), Postives = 74/116 (63.79%), Query Frame = 3
Query:    6 FVVKIPDGMALEQAAPLLCAGVTVFSPLSHFGLKQSXXXXXXXXXXXXXXXXXXXAKAMGHHVTVISSSDKKRVEAMEHLGADQYLVSSDATRMQEAADSLDYIIDTVPANHPLEP 353
            FV++IPD + L+ AAPLLCAG+TV+SP+ + GL +                    AKAMG  VTVIS+S+KKR EA+  LGAD +LVS D  ++++A  ++D IIDTV A H L P
Sbjct:  144 FVIRIPDNLPLDAAAPLLCAGITVYSPMKYHGLDKPGMHIGVVGLGGLGHVGVKFAKAMGTKVTVISTSEKKRDEAINRLGADAFLVSRDPKQIKDAMGTMDGIIDTVSATHSLLP 259          
BLAST of CX289122 vs. ExPASy Swiss-Prot
Match: GEDH1_OCIBA (Geraniol dehydrogenase 1 OS=Ocimum basilicum GN=GEDH1 PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 1.521e-22
Identity = 55/138 (39.86%), Postives = 77/138 (55.80%), Query Frame = 3
Query:    6 FVVKIPDGMALEQAAPLLCAGVTVFSPLSHFGLKQSXXXXXXXXXXXXXXXXXXXAKAMGHHVTVISSSDKKRVEAMEHLGADQYLVSSDATRMQEAADSLDYIIDTVPANHPLEPYXXXXXXXXXXXXTGVINTPMQ 419
            F+++ P+   L+  APLLCAG+T +SPL +FGL +                    AKA G  VTVIS+S  K+ EAM+HLG D+++VS+D  +MQ A  +LD IIDTV A HP+ P              G+ + P+Q
Sbjct:  148 FIIRWPENFPLDAGAPLLCAGITTYSPLKYFGLDKPGLRVGVNGLGGLGHVAVKFAKAFGTKVTVISTSLSKKEEAMQHLGVDEFVVSTDPQQMQAAVGTLDGIIDTVSAPHPIVPLLSLLKPHGKLIVVGLPDKPLQ 285          
BLAST of CX289122 vs. ExPASy Swiss-Prot
Match: MTDH_APIGR (Mannitol dehydrogenase OS=Apium graveolens GN=MTD PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.987e-22
Identity = 53/116 (45.69%), Postives = 70/116 (60.34%), Query Frame = 3
Query:    6 FVVKIPDGMALEQAAPLLCAGVTVFSPLSHFGLKQSXXXXXXXXXXXXXXXXXXXAKAMGHHVTVISSSDKKRVEAMEHLGADQYLVSSDATRMQEAADSLDYIIDTVPANHPLEP 353
            F+++ P  + L+  APLLCAG+T +SPL ++GL +                    AKA G  VTVI  S+ KR EA+E LGAD +L++SD  +M+ A  SLD IIDTVP NHPL P
Sbjct:  148 FILRWPKNLPLDSGAPLLCAGITTYSPLKYYGLDKPGTKIGVVGLGGLGHVAVKMAKAFGAQVTVIDISESKRKEALEKLGADSFLLNSDQEQMKGARSSLDGIIDTVPVNHPLAP 263          
BLAST of CX289122 vs. ExPASy Swiss-Prot
Match: MTDH_PETCR (Mannitol dehydrogenase (Fragment) OS=Petroselinum crispum GN=ELI3 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 2.595e-22
Identity = 54/116 (46.55%), Postives = 73/116 (62.93%), Query Frame = 3
Query:    6 FVVKIPDGMALEQAAPLLCAGVTVFSPLSHFGLKQSXXXXXXXXXXXXXXXXXXXAKAMGHHVTVISSSDKKRVEAMEHLGADQYLVSSDATRMQEAADSLDYIIDTVPANHPLEP 353
            FV++ P+ + L+  APLLCAG+T +SPL + GL +                    AKA G HVTVIS+S+ K+ EA+E LGAD++LVSSD+ +MQ A  +L  IIDTV A HP+ P
Sbjct:  125 FVLRWPENLPLDSGAPLLCAGITTYSPLRYHGLDKPGTKVGVVGLGGLGHVAVKMAKAFGAHVTVISTSESKKQEALEKLGADEFLVSSDSDQMQAATGTLHGIIDTVSALHPVVP 240          
BLAST of CX289122 vs. ExPASy Swiss-Prot
Match: CADH3_ARATH (Cinnamyl alcohol dehydrogenase 3 OS=Arabidopsis thaliana GN=CAD3 PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 2.595e-22
Identity = 54/139 (38.85%), Postives = 80/139 (57.55%), Query Frame = 3
Query:    3 KFVVKIPDGMALEQAAPLLCAGVTVFSPLSHFGL-KQSXXXXXXXXXXXXXXXXXXXAKAMGHHVTVISSSDKKRVEAMEHLGADQYLVSSDATRMQEAADSLDYIIDTVPANHPLEPYXXXXXXXXXXXXTGVINTPM 416
            +FV+ IPDG+  +  APLLCAG+TV+SP+ ++G+ K+S                    KA G  VTVIS S +K  EA++ LGAD +LV++D+ +M+EA  ++D+IIDTV A H L P              G++  P+
Sbjct:  141 RFVLSIPDGLPSDSGAPLLCAGITVYSPMKYYGMTKESGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRSSEKEREAIDRLGADSFLVTTDSQKMKEAVGTMDFIIDTVSAEHALLPLFSLLKVSGKLVALGLLEKPL 279          
BLAST of CX289122 vs. ExPASy Swiss-Prot
Match: CADH1_ORYSJ (Probable cinnamyl alcohol dehydrogenase 1 OS=Oryza sativa subsp. japonica GN=CAD1 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 2.595e-22
Identity = 52/118 (44.07%), Postives = 71/118 (60.17%), Query Frame = 3
Query:    3 KFVVKIPDGMALEQAAPLLCAGVTVFSPLSHFGLKQSXXXXXXXXXXXXXXXXXXXAKAMGHHVTVISSSDKKRVEAMEHLGADQYLVSSDATRMQEAADSLDYIIDTVPANHPLEPY 356
            ++  KIPDG  LE+AAPLLCAG+TV+SP+    + Q                     KA G  VTVIS+S+ KR EA++ LGAD ++VSSD  +M+    SL++IIDT   +HP +PY
Sbjct:  144 RYCFKIPDGYPLEKAAPLLCAGITVYSPMMRHNMNQPGKSLGVIGLGGLGHMAVKFGKAFGLKVTVISTSESKRKEAIDLLGADNFVVSSDENQMETLKSSLNFIIDTASGDHPFDPY 261          
BLAST of CX289122 vs. ExPASy Swiss-Prot
Match: CADH2_ARATH (Cinnamyl alcohol dehydrogenase 2 OS=Arabidopsis thaliana GN=CAD2 PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.781e-22
Identity = 52/118 (44.07%), Postives = 75/118 (63.56%), Query Frame = 3
Query:    3 KFVVKIPDGMALEQAAPLLCAGVTVFSPLSHFGL-KQSXXXXXXXXXXXXXXXXXXXAKAMGHHVTVISSSDKKRVEAMEHLGADQYLVSSDATRMQEAADSLDYIIDTVPANHPLEP 353
            +FV+ IPDG+  +  APLLCAG+TV+SP+ ++G+ K+S                    KA G  VTVIS S +K  EA++ LGAD +LV++D+ +M+EA  ++D+IIDTV A H L P
Sbjct:  142 RFVLSIPDGLPSDSGAPLLCAGITVYSPMKYYGMTKESGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRSSEKEREAIDRLGADSFLVTTDSQKMKEAVGTMDFIIDTVSAEHALLP 259          
The following BLAST results are available for this feature:
BLAST of CX289122 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
MTDH_FRAAN7.296e-2550.86Probable mannitol dehydrogenase OS=Fragaria ananas... [more]
CADH7_ARATH1.797e-2348.28Cinnamyl alcohol dehydrogenase 7 OS=Arabidopsis th... [more]
MTDH_MESCR6.829e-2343.48Probable mannitol dehydrogenase OS=Mesembryanthemu... [more]
CADH8_ARATH1.165e-2247.41Cinnamyl alcohol dehydrogenase 8 OS=Arabidopsis th... [more]
GEDH1_OCIBA1.521e-2239.86Geraniol dehydrogenase 1 OS=Ocimum basilicum GN=GE... [more]
MTDH_APIGR1.987e-2245.69Mannitol dehydrogenase OS=Apium graveolens GN=MTD ... [more]
MTDH_PETCR2.595e-2246.55Mannitol dehydrogenase (Fragment) OS=Petroselinum ... [more]
CADH3_ARATH2.595e-2238.85Cinnamyl alcohol dehydrogenase 3 OS=Arabidopsis th... [more]
CADH1_ORYSJ2.595e-2244.07Probable cinnamyl alcohol dehydrogenase 1 OS=Oryza... [more]
CADH2_ARATH5.781e-2244.07Cinnamyl alcohol dehydrogenase 2 OS=Arabidopsis th... [more]

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Properties
Property NameValue
Genbank descriptionC02009D07SK IF1 Citrus clementina cDNA clone C02009D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289122 ID=CX289122; Name=CX289122; organism=Citrus clementina; type=EST; length=430bp
AAAAGTTTGTGGTGAAAATACCAGATGGAATGGCACTGGAGCAGGCGGCA
CCGCTATTGTGTGCTGGTGTGACAGTGTTCAGTCCCCTGAGCCACTTTGG
ATTGAAGCAGAGCGGGCTGAGAGGAGGAATCTTGGGGCTCGGAGGAGTAG
GCCACATGGGGGTTTTGATAGCTAAGGCGATGGGACACCATGTTACTGTG
ATTAGCTCTTCTGATAAGAAAAGAGTGGAAGCTATGGAGCATCTTGGTGC
CGATCAGTACCTTGTCAGCTCCGACGCAACTCGTATGCAAGAAGCCGCTG
ACTCACTTGATTATATCATTGATACCGTACCCGCAAATCACCCTCTGGAG
CCTTACCTTTCGCTGTTGAAGCTTGATGGAAAGTTGATCTTGACGGGTGT
CATTAACACTCCCATGCAGTTTCTTACCCC
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