CX289122

Overview
NameCX289122
Unique NameCX289122
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length430
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig7570 contig Ccv1_Contig7570:474..903. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX289122 vs. ExPASy Swiss-Prot
Match: CAD8C_ORYSJ (Probable cinnamyl alcohol dehydrogenase 8C OS=Oryza sativa subsp. japonica GN=CAD8C PE=2 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 5.781e-22
Identity = 55/116 (47.41%), Postives = 73/116 (62.93%), Query Frame = 3
Query:    6 FVVKIPDGMALEQAAPLLCAGVTVFSPLSHFGLKQSXXXXXXXXXXXXXXXXXXXAKAMGHHVTVISSSDKKRVEAMEHLGADQYLVSSDATRMQEAADSLDYIIDTVPANHPLEP 353
            +V+++P G+ L+ AAPLLCAGVTV+SP+   GL                      AKA G  VTVIS+S  KR EA+EHLGAD++LVS DA +M  AA ++D I++TV A HP+ P
Sbjct:  221 YVLRVPAGLPLDSAAPLLCAGVTVYSPMVIHGLNAPGKHVGVVGLGGLGHVAVKFAKAFGMRVTVISTSPGKRQEALEHLGADEFLVSRDAGQMAAAAATMDGILNTVSAWHPIAP 336          
BLAST of CX289122 vs. ExPASy Swiss-Prot
Match: CAD8B_ORYSJ (Probable cinnamyl alcohol dehydrogenase 8B OS=Oryza sativa subsp. japonica GN=CAD8B PE=3 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 1.288e-21
Identity = 55/116 (47.41%), Postives = 73/116 (62.93%), Query Frame = 3
Query:    6 FVVKIPDGMALEQAAPLLCAGVTVFSPLSHFGLKQSXXXXXXXXXXXXXXXXXXXAKAMGHHVTVISSSDKKRVEAMEHLGADQYLVSSDATRMQEAADSLDYIIDTVPANHPLEP 353
            +V+++P G+ L+ AAPLLCAGVTV+SP+   GL                      AKA G  VTVIS+S  KR EA+EHLGAD++LVS DA +M  AA ++D I++TV A HP+ P
Sbjct:  218 YVLRVPAGLPLDGAAPLLCAGVTVYSPMVIHGLNAPGKHVGVVGLGGLGHVAVKFAKAFGMRVTVISTSPGKRREALEHLGADEFLVSRDAGQMAAAAGTMDGILNTVSAWHPVAP 333          
BLAST of CX289122 vs. ExPASy Swiss-Prot
Match: MTDH_MEDSA (Probable mannitol dehydrogenase OS=Medicago sativa GN=CAD1 PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.197e-21
Identity = 51/139 (36.69%), Postives = 76/139 (54.68%), Query Frame = 3
Query:    3 KFVVKIPDGMALEQAAPLLCAGVTVFSPLSHFGLKQSXXXXXXXXXXXXXXXXXXXAKAMGHHVTVISSSDKKRVEAMEHLGADQYLVSSDATRMQEAADSLDYIIDTVPANHPLEPYXXXXXXXXXXXXTGVINTPMQ 419
            ++VV+ PD + L+  APLLCAG+TV+SP+ ++G+ +                     KA G  VTVIS+S  K  EA++ LGAD +LVS D  +M+ A  ++DYIIDT+ A H L P              G+ + P++
Sbjct:  146 RYVVQFPDNLPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAIKFGKAFGLKVTVISTSPNKETEAIDKLGADSFLVSKDPEKMKAAMGTMDYIIDTISAAHSLMPLLGLLKLNGKLVTVGLPSKPLE 284          
BLAST of CX289122 vs. ExPASy Swiss-Prot
Match: CADH5_ORYSJ (Putative cinnamyl alcohol dehydrogenase 5 OS=Oryza sativa subsp. japonica GN=CAD5 PE=3 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 2.869e-21
Identity = 56/139 (40.29%), Postives = 75/139 (53.96%), Query Frame = 3
Query:    3 KFVVKIPDGMALEQAAPLLCAGVTVFSPLSHFGLKQSXXXXXXXXXXXXXXXXXXXAKAMGHHVTVISSSDKKRVEAMEHLGADQYLVSSDATRMQEAADSLDYIIDTVPANHPLEPYXXXXXXXXXXXXTGVINTPMQ 419
            +FVV+ P+ M L++ APLLCAG+TV+SP+ + GL                      AKA G  VTVISSS  KR EA+E LGAD ++VS +A  M  A  ++D II+TV AN P+ P              G+   PM+
Sbjct:  140 RFVVRFPEAMPLDKGAPLLCAGITVYSPMKYHGLNVPSKHVGVLGLGGLGHVAVKFAKAFGMTVTVISSSPGKRQEALERLGADAFVVSKNADEMNAATGTMDGIINTVSANIPIAPLLGLLKPNGKMILVGLPEKPME 278          
BLAST of CX289122 vs. ExPASy Swiss-Prot
Match: CADH9_ARATH (Probable cinnamyl alcohol dehydrogenase 9 OS=Arabidopsis thaliana GN=CAD9 PE=1 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 6.391e-21
Identity = 48/117 (41.03%), Postives = 71/117 (60.68%), Query Frame = 3
Query:    3 KFVVKIPDGMALEQAAPLLCAGVTVFSPLSHFGLKQSXXXXXXXXXXXXXXXXXXXAKAMGHHVTVISSSDKKRVEAMEHLGADQYLVSSDATRMQEAADSLDYIIDTVPANHPLEP 353
            +FV++ P+ +  +  APLLCAG+TV+SP+ ++G+ ++                    KA G  VTVISSS  K  EA+ HLGAD +LV++D  +M+ A  ++DYIIDT+ A H L P
Sbjct:  147 RFVLRFPENLPSDSGAPLLCAGITVYSPMKYYGMTEAGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSTKAEEAINHLGADSFLVTTDPQKMKAAIGTMDYIIDTISAVHALYP 263          
BLAST of CX289122 vs. ExPASy Swiss-Prot
Match: CADH6_ORYSJ (Probable cinnamyl alcohol dehydrogenase 6 OS=Oryza sativa subsp. japonica GN=CAD6 PE=2 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 6.391e-21
Identity = 56/120 (46.67%), Postives = 71/120 (59.17%), Query Frame = 3
Query:    3 KFVVKIPDGMALEQAAPLLCAGVTVFSPLSHFGLKQSXXXXXXXXXXXXXXXXXXXAK---AMGHHVTVISSSDKKRVEAMEHLGADQYLVSSDATRMQEAADSLDYIIDTVPANHPLEP 353
            +FVV+IPD + L+ AAPLLCAG+TV+SP+   G+ Q+                    K   A G HVTVIS+S  K  EA E+L AD ++VS+D  +MQ    SLDYIIDTV A H L P
Sbjct:  145 RFVVRIPDTLPLDAAAPLLCAGITVYSPMKQHGMLQADAAGRRLGVVGLGGLGHVAVKFGKAFGLHVTVISTSPAKEREARENLKADNFVVSTDQKQMQAMTRSLDYIIDTVAATHSLGP 264          
BLAST of CX289122 vs. ExPASy Swiss-Prot
Match: MTDH1_STYHU (Probable mannitol dehydrogenase 1 OS=Stylosanthes humilis GN=CAD1 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 8.347e-21
Identity = 52/139 (37.41%), Postives = 76/139 (54.68%), Query Frame = 3
Query:    3 KFVVKIPDGMALEQAAPLLCAGVTVFSPLSHFGLKQSXXXXXXXXXXXXXXXXXXXAKAMGHHVTVISSSDKKRVEAMEHLGADQYLVSSDATRMQEAADSLDYIIDTVPANHPLEPYXXXXXXXXXXXXTGVINTPMQ 419
            +FV++ PD + L+  APLLCAG+TV+SP+ ++G+ +                     KA G  VTVISSS  K  EA++ LGAD +L+SSD  +M+ A  ++DYIIDT+ A H L                G+ + P+Q
Sbjct:  139 RFVLQFPDNLPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAIKFGKAFGLKVTVISSSPNKESEAIDVLGADSFLLSSDPEKMKAATGTMDYIIDTISAVHSLVSLLGLLKLNGKLVTVGLPSKPLQ 277          
BLAST of CX289122 vs. ExPASy Swiss-Prot
Match: CADH3_ORYSJ (Probable cinnamyl alcohol dehydrogenase 3 OS=Oryza sativa subsp. japonica GN=CAD3 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 8.347e-21
Identity = 53/139 (38.13%), Postives = 75/139 (53.96%), Query Frame = 3
Query:    3 KFVVKIPDGMALEQAAPLLCAGVTVFSPLSHFGLKQSXXXXXXXXXXXXXXXXXXXAKAMGHHVTVISSSDKKRVEAMEHLGADQYLVSSDATRMQEAADSLDYIIDTVPANHPLEPYXXXXXXXXXXXXTGVINTPMQ 419
            +FVV  P+ M L+  APLLCAG+TV++P+ + GL                      A+A G  VTVISSS  K+ EA+E LGAD ++VSS A  M+ A  ++D +I+TV AN P+ PY             G+   P++
Sbjct:  150 RFVVMFPEAMPLDVGAPLLCAGITVYTPMKYHGLNAPGKHVGVLGLGGLGHVAVKFARAFGLKVTVISSSPGKKREALERLGADAFVVSSSAEEMEAARSTMDGVINTVSANTPMAPYLALLKPNGKMILVGLPENPLE 288          
BLAST of CX289122 vs. ExPASy Swiss-Prot
Match: CAD8A_ORYSJ (Probable cinnamyl alcohol dehydrogenase 8A OS=Oryza sativa subsp. japonica GN=CAD8A PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 7.067e-20
Identity = 56/138 (40.58%), Postives = 70/138 (50.72%), Query Frame = 3
Query:    6 FVVKIPDGMALEQAAPLLCAGVTVFSPLSHFGLKQSXXXXXXXXXXXXXXXXXXXAKAMGHHVTVISSSDKKRVEAMEHLGADQYLVSSDATRMQEAADSLDYIIDTVPANHPLEPYXXXXXXXXXXXXTGVINTPMQ 419
            +V+++P  +  + AAPLLCAGVTV+SP+  +GL                       KA G  VTVISSS  KR EA+E LGAD +L S D   M  AA ++D IIDTV A HPL P              G    P+Q
Sbjct:  143 YVLRVPASLPPDGAAPLLCAGVTVYSPMVEYGLNAPGKHLGVVGLGGLGHLGVKFGKAFGMKVTVISSSPAKREEALERLGADAFLSSRDGEGMAAAAATMDGIIDTVSAGHPLVPLLSLLKPKGQMVVVGAPAAPLQ 280          
BLAST of CX289122 vs. ExPASy Swiss-Prot
Match: CAD8D_ORYSJ (Probable cinnamyl alcohol dehydrogenase 8D OS=Oryza sativa subsp. japonica GN=CAD8D PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.580e-19
Identity = 56/138 (40.58%), Postives = 69/138 (50.00%), Query Frame = 3
Query:    6 FVVKIPDGMALEQAAPLLCAGVTVFSPLSHFGLKQSXXXXXXXXXXXXXXXXXXXAKAMGHHVTVISSSDKKRVEAMEHLGADQYLVSSDATRMQEAADSLDYIIDTVPANHPLEPYXXXXXXXXXXXXTGVINTPMQ 419
            +VV++P  +  + AAPLLCAGVTV+SP+  +GL                       KA G  VTVISSS  KR EA+  LGAD +L S D   M  AA ++D IIDTV A HPL P              G    P+Q
Sbjct:  143 YVVRVPASLPPDGAAPLLCAGVTVYSPMVEYGLNGPGKHLGVVGLGGLGHLGVKFGKAFGMKVTVISSSPAKRGEALGRLGADAFLSSRDGEGMAAAAATMDGIIDTVSAGHPLVPLLSLLKPKGQMVVVGAPAMPLQ 280          
The following BLAST results are available for this feature:
BLAST of CX289122 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
CAD8C_ORYSJ5.781e-2247.41Probable cinnamyl alcohol dehydrogenase 8C OS=Oryz... [more]
CAD8B_ORYSJ1.288e-2147.41Probable cinnamyl alcohol dehydrogenase 8B OS=Oryz... [more]
MTDH_MEDSA2.197e-2136.69Probable mannitol dehydrogenase OS=Medicago sativa... [more]
CADH5_ORYSJ2.869e-2140.29Putative cinnamyl alcohol dehydrogenase 5 OS=Oryza... [more]
CADH9_ARATH6.391e-2141.03Probable cinnamyl alcohol dehydrogenase 9 OS=Arabi... [more]
CADH6_ORYSJ6.391e-2146.67Probable cinnamyl alcohol dehydrogenase 6 OS=Oryza... [more]
MTDH1_STYHU8.347e-2137.41Probable mannitol dehydrogenase 1 OS=Stylosanthes ... [more]
CADH3_ORYSJ8.347e-2138.13Probable cinnamyl alcohol dehydrogenase 3 OS=Oryza... [more]
CAD8A_ORYSJ7.067e-2040.58Probable cinnamyl alcohol dehydrogenase 8A OS=Oryz... [more]
CAD8D_ORYSJ4.580e-1940.58Probable cinnamyl alcohol dehydrogenase 8D OS=Oryz... [more]

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Properties
Property NameValue
Genbank descriptionC02009D07SK IF1 Citrus clementina cDNA clone C02009D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289122 ID=CX289122; Name=CX289122; organism=Citrus clementina; type=EST; length=430bp
AAAAGTTTGTGGTGAAAATACCAGATGGAATGGCACTGGAGCAGGCGGCA
CCGCTATTGTGTGCTGGTGTGACAGTGTTCAGTCCCCTGAGCCACTTTGG
ATTGAAGCAGAGCGGGCTGAGAGGAGGAATCTTGGGGCTCGGAGGAGTAG
GCCACATGGGGGTTTTGATAGCTAAGGCGATGGGACACCATGTTACTGTG
ATTAGCTCTTCTGATAAGAAAAGAGTGGAAGCTATGGAGCATCTTGGTGC
CGATCAGTACCTTGTCAGCTCCGACGCAACTCGTATGCAAGAAGCCGCTG
ACTCACTTGATTATATCATTGATACCGTACCCGCAAATCACCCTCTGGAG
CCTTACCTTTCGCTGTTGAAGCTTGATGGAAAGTTGATCTTGACGGGTGT
CATTAACACTCCCATGCAGTTTCTTACCCC
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