CX289122

Overview
NameCX289122
Unique NameCX289122
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length430
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig7570 contig Ccv1_Contig7570:474..903. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX289122 vs. ExPASy Swiss-Prot
Match: CADH6_ARATH (Probable cinnamyl alcohol dehydrogenase 6 OS=Arabidopsis thaliana GN=CAD6 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.333e-18
Identity = 48/117 (41.03%), Postives = 70/117 (59.83%), Query Frame = 3
Query:    3 KFVVKIPDGMALEQAAPLLCAGVTVFSPLSHFGLKQSXXXXXXXXXXXXXXXXXXXAKAMGHHVTVISSSDKKRVEAMEHLGADQYLVSSDATRMQEAADSLDYIIDTVPANHPLEP 353
            ++ VKIP  + L  AAPLLCAG++++SP+ +FGL                      AKA G  VTV+SS+  K  +A++ LGAD +LVS+D  +M+ A  ++D IIDTV A+H + P
Sbjct:  148 RYAVKIPHTLPLVSAAPLLCAGISMYSPMKYFGLTGPDKHVGIVGLGGLGHIGVRFAKAFGTKVTVVSSTTGKSKDALDTLGADGFLVSTDEDQMKAAMGTMDGIIDTVSASHSISP 264          
BLAST of CX289122 vs. ExPASy Swiss-Prot
Match: CADH4_ORYSJ (Putative cinnamyl alcohol dehydrogenase 4 OS=Oryza sativa subsp. japonica GN=CAD4 PE=3 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 1.128e-17
Identity = 45/118 (38.14%), Postives = 64/118 (54.24%), Query Frame = 3
Query:    3 KFVVKIPDGMALEQAAPLLCAGVTVFSPLSHFGLKQSXXXXXXXXXXXXXXXXXXXAKAMGHHVTVISSSDKKRVEAMEHLGADQYLVSSDATRMQEAADSLDYIIDTVPANHPLEPY 356
            ++  KIP    L +AAPLLCAG+TV++P+    + Q                     KA G  VTV S+S+ KR EA+  LGAD +++SSD  +M+    SL +IIDT   +H  +PY
Sbjct:  144 RYCFKIPADYPLSKAAPLLCAGITVYTPMIRHNMNQPGKSLGVIGLGGLGHMAVKFGKAFGLKVTVFSTSESKREEAINLLGADNFVISSDENQMESLKSSLHFIIDTASGDHQFDPY 261          
BLAST of CX289122 vs. ExPASy Swiss-Prot
Match: CADH9_ORYSJ (Probable cinnamyl alcohol dehydrogenase 9 OS=Oryza sativa subsp. japonica GN=CAD9 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.473e-17
Identity = 52/123 (42.28%), Postives = 70/123 (56.91%), Query Frame = 3
Query:    3 KFVVKIPDG------MALEQAAPLLCAGVTVFSPLSHFGLKQSXXXXXXXXXXXXXXXXXXXAKAMGHHVTVISSSDKKRVEAMEHLGADQYLVSSDATRMQEAADSLDYIIDTVPANHPLEP 353
            ++VV+IP G        L++ APLLCAGVTV+ P+   GL +                     KA G  VTVIS+S  K  EA+E LGAD +L+S++A +M+ AA ++D IIDTV A H L P
Sbjct:  142 RYVVRIPGGGGGASPAPLDRLAPLLCAGVTVYCPMRRLGLDRPGVHLGVAGLGGLGHLAVKFGKAFGVKVTVISTSPWKEAEAVERLGADAFLLSTNAEQMKAAAGTMDGIIDTVSAVHDLTP 264          
BLAST of CX289122 vs. ExPASy Swiss-Prot
Match: CADH1_ARATH (Probable cinnamyl alcohol dehydrogenase 1 OS=Arabidopsis thaliana GN=CAD1 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.551e-17
Identity = 43/118 (36.44%), Postives = 64/118 (54.24%), Query Frame = 3
Query:    3 KFVVKIPDGMALEQAAPLLCAGVTVFSPLSHFGLKQSXXXXXXXXXXXXXXXXXXXAKAMGHHVTVISSSDKKRVEAMEHLGADQYLVSSDATRMQEAADSLDYIIDTVPANHPLEPY 356
            ++  KIP    LE AAPLLCAG+TV++P+    + Q                     KA G  VTV S+S  K+ EA+  LGA+ +++SSD  +M+    SLD+++DT   +H  +PY
Sbjct:  145 RYCYKIPVDYPLESAAPLLCAGITVYAPMMRHNMNQPGKSLGVIGLGGLGHMAVKFGKAFGLSVTVFSTSISKKEEALNLLGAENFVISSDHDQMKALEKSLDFLVDTASGDHAFDPY 262          
BLAST of CX289122 vs. ExPASy Swiss-Prot
Match: CADH7_ORYSJ (Cinnamyl alcohol dehydrogenase 7 OS=Oryza sativa subsp. japonica GN=CAD7 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.056e-15
Identity = 50/150 (33.33%), Postives = 75/150 (50.00%), Query Frame = 3
Query:    3 KFVVKIPDG--------MALEQAAPLLCAGVTVFSPLSHFGLKQSXXXXXXXXXXXXXXXXXXXAKAMGHHVTVISSSDKKRVEAMEHLGADQYLVSSDATRMQEAADSLDYIIDTVPANHPLEPYXXXXXXXXXXXXTGVINTPMQFLT 428
            +FVV+ P          + L+  APLLCAGVTV++P+   GL ++                   A+A G  VTVIS+S  KR EA+E LGAD ++VS++A+ M+ A  ++  II+T  A+  +  Y             G+   P+Q  T
Sbjct:  158 RFVVRFPSSAGGGAGAALPLDSGAPLLCAGVTVYAPMRQHGLCEAGKHVGVVGLGGLGHVAVKFARAFGMRVTVISTSPVKRQEALERLGADGFIVSTNASEMKAAMGTMHGIINTASASTSMHSYLALLKPKGKMILVGLPEKPLQIPT 307          
BLAST of CX289122 vs. ExPASy Swiss-Prot
Match: ADHA_BACSU (Probable formaldehyde dehydrogenase adhA OS=Bacillus subtilis GN=adhA PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.436e-14
Identity = 45/118 (38.14%), Postives = 64/118 (54.24%), Query Frame = 3
Query:    3 KFVVKIPDGMALEQAAPLLCAGVTVFSPLSHFGLKQSXXXXXXXXXXXXXXXXXXXAKAMGHHVTVISSSDKKRVEAMEHLGADQYLVSSDATRMQEAADSLDYIIDTVPANHPLEPY 356
            +FVV+IPD + ++ A+PLLCAG+T +SPL H+ +                      A AMG  VTV+S S  K+ EA+E LGA+ Y  +SD       A   D I++TV AN  ++ Y
Sbjct:  142 RFVVRIPDRLEMDVASPLLCAGITTYSPLKHWNVGPG-KKVAIVGVGGLGHLAIQFAHAMGAEVTVLSRSMNKKEEALE-LGANHYFATSDPATFTALAGRFDVILNTVSANLDVDAY 257          
BLAST of CX289122 vs. ExPASy Swiss-Prot
Match: MTDH3_STYHU (Probable mannitol dehydrogenase 3 OS=Stylosanthes humilis GN=CAD3 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.434e-12
Identity = 47/140 (33.57%), Postives = 71/140 (50.71%), Query Frame = 3
Query:    6 FVVKIPDGMALEQA-APLLCAGVTVFSPLSHFGLKQSXXXXXXXXXXXXXXXXXXXAKAMGHHVTVISSSDK-KRVEAMEHLGADQYLVSSDATRMQEAADSLDYIIDTVPANHPLEPYXXXXXXXXXXXXTGVINTPMQ 419
            FV +IP+G+ L+   +  LC G +  SPL ++GL +                    AK  G  +TVIS+S   K+ EA+++LGAD +LVS D  +M+   ++LD IIDTV A+H + P              G I  P++
Sbjct:  149 FVTRIPEGLPLDGCGSSSLCWGYS-HSPLKYYGLDKPGLHVGVVGLGGLGHMVAKFAKTHGLKITVISTSPPTKKEEAIKNLGADSFLVSRDPDQMEAPKETLDGIIDTVSADHSIVPLIGLLKSHGKLVLIGAIEKPLE 287          
BLAST of CX289122 vs. ExPASy Swiss-Prot
Match: YL498_MIMIV (Probable zinc-type alcohol dehydrogenase-like protein L498 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_L498 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.179e-12
Identity = 37/117 (31.62%), Postives = 62/117 (52.99%), Query Frame = 3
Query:    6 FVVKIPDGMALEQAAPLLCAGVTVFSPLSHFGLKQSXXXXXXXXXXXXXXXXXXXAKAMGHHVTVISSSDKKRVEAMEHLGADQYLVSSDATRMQEAADSLDYIIDTVPANHPLEPY 356
            FV K P  + +E+ APL+CAG T +SPL    +                      AKAMG HV  I+ ++ K  +++ +LGA++ ++S++  +M +   S D+I+ T+P  H + PY
Sbjct:  213 FVYKFPKNLDIERCAPLMCAGATTYSPLRQAKVGPGMKVGIVGIGGLGHIAVKI-AKAMGAHVVAITRTEWKFKDSVNNLGANESILSTNVWQMNQHKGSFDFILSTIPMAHDIVPY 328          
BLAST of CX289122 vs. ExPASy Swiss-Prot
Match: ADHC_MYCTU (NADP-dependent alcohol dehydrogenase C OS=Mycobacterium tuberculosis GN=adhC PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.208e-11
Identity = 45/137 (32.85%), Postives = 65/137 (47.45%), Query Frame = 3
Query:    6 FVVKIPDGMALEQAAPLLCAGVTVFSPLSHFGLKQSXXXXXXXXXXXXXXXXXXXAKAMGHHVTVISSSDKKRVEAMEHLGADQYLVSSDATRMQEAADSLDYIIDTVPANHPLEPYXXXXXXXXXXXXTGVINTPM 416
            +V++IPD + L+ AAPLLCAG+T++SPL H+    +                   A AMG  VTV+S S KK  + +  LGA  Y  ++D    ++     D I++TV AN  L  Y             G+   PM
Sbjct:  140 YVLRIPDVLPLDVAAPLLCAGITLYSPLRHWNAGANTRVAIIGLGGLGHMGVKLGA-AMGADVTVLSQSLKKMEDGL-RLGAKSYYATADPDTFRKLRGGFDLILNTVSANLDLGQYLNLLDVDGTLVELGIPEHPM 274          
BLAST of CX289122 vs. ExPASy Swiss-Prot
Match: ADHC_MYCBO (NADP-dependent alcohol dehydrogenase C OS=Mycobacterium bovis GN=adhC PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.208e-11
Identity = 45/137 (32.85%), Postives = 65/137 (47.45%), Query Frame = 3
Query:    6 FVVKIPDGMALEQAAPLLCAGVTVFSPLSHFGLKQSXXXXXXXXXXXXXXXXXXXAKAMGHHVTVISSSDKKRVEAMEHLGADQYLVSSDATRMQEAADSLDYIIDTVPANHPLEPYXXXXXXXXXXXXTGVINTPM 416
            +V++IPD + L+ AAPLLCAG+T++SPL H+    +                   A AMG  VTV+S S KK  + +  LGA  Y  ++D    ++     D I++TV AN  L  Y             G+   PM
Sbjct:  140 YVLRIPDVLPLDVAAPLLCAGITLYSPLRHWNAGANTRVAIIGLGGLGHMGVKLGA-AMGADVTVLSQSLKKMEDGL-RLGAKSYYATADPDTFRKLRGGFDLILNTVSANLDLGQYLNLLDVDGTLVELGIPEHPM 274          
The following BLAST results are available for this feature:
BLAST of CX289122 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
CADH6_ARATH1.333e-1841.03Probable cinnamyl alcohol dehydrogenase 6 OS=Arabi... [more]
CADH4_ORYSJ1.128e-1738.14Putative cinnamyl alcohol dehydrogenase 4 OS=Oryza... [more]
CADH9_ORYSJ1.473e-1742.28Probable cinnamyl alcohol dehydrogenase 9 OS=Oryza... [more]
CADH1_ARATH9.551e-1736.44Probable cinnamyl alcohol dehydrogenase 1 OS=Arabi... [more]
CADH7_ORYSJ1.056e-1533.33Cinnamyl alcohol dehydrogenase 7 OS=Oryza sativa s... [more]
ADHA_BACSU4.436e-1438.14Probable formaldehyde dehydrogenase adhA OS=Bacill... [more]
MTDH3_STYHU2.434e-1233.57Probable mannitol dehydrogenase 3 OS=Stylosanthes ... [more]
YL498_MIMIV3.179e-1231.62Probable zinc-type alcohol dehydrogenase-like prot... [more]
ADHC_MYCTU1.208e-1132.85NADP-dependent alcohol dehydrogenase C OS=Mycobact... [more]
ADHC_MYCBO1.208e-1132.85NADP-dependent alcohol dehydrogenase C OS=Mycobact... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC02009D07SK IF1 Citrus clementina cDNA clone C02009D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289122 ID=CX289122; Name=CX289122; organism=Citrus clementina; type=EST; length=430bp
AAAAGTTTGTGGTGAAAATACCAGATGGAATGGCACTGGAGCAGGCGGCA
CCGCTATTGTGTGCTGGTGTGACAGTGTTCAGTCCCCTGAGCCACTTTGG
ATTGAAGCAGAGCGGGCTGAGAGGAGGAATCTTGGGGCTCGGAGGAGTAG
GCCACATGGGGGTTTTGATAGCTAAGGCGATGGGACACCATGTTACTGTG
ATTAGCTCTTCTGATAAGAAAAGAGTGGAAGCTATGGAGCATCTTGGTGC
CGATCAGTACCTTGTCAGCTCCGACGCAACTCGTATGCAAGAAGCCGCTG
ACTCACTTGATTATATCATTGATACCGTACCCGCAAATCACCCTCTGGAG
CCTTACCTTTCGCTGTTGAAGCTTGATGGAAAGTTGATCTTGACGGGTGT
CATTAACACTCCCATGCAGTTTCTTACCCC
back to top