CX289138

Overview
NameCX289138
Unique NameCX289138
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length545
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3507 contig Ccv1_Contig3507:1330..1874. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX289138 vs. ExPASy Swiss-Prot
Match: TM9S2_PONAB (Transmembrane 9 superfamily member 2 OS=Pongo abelii GN=TM9SF2 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 2.677e-20
Identity = 51/161 (31.68%), Postives = 73/161 (45.34%), Query Frame = 2
Query:    8 GPLFLTFCFLNTVAIAYNATAALPFGXXXXXXXXXXXXXSPLLVLGGIAGKNSKAEFQAPCRTTKYPREIPPLPWYRSAIPQMAMAGFLPFSAIYIELYYIFASVWGHRIYXXXXXXXXXXXXXXXXXXXXXXALTYFQLAAEDHEWWWRSFLCGGSTGAF 490
            G +F  F  +N +     ++AA+PFG              PL  +G   G    A  + P RT + PR+IP   +Y   +P + M G LPF  I+I+L++I  S+W H++Y                       L YF L AED+ W WRSFL  G T  +
Sbjct:  443 GIVFADFFIMNLILWGEGSSAAIPFGTLVAILALWFCISVPLTFIGAYFGFKKNA-IEHPVRTNQIPRQIPEQSFYTKPLPGIIMGGILPFGCIFIQLFFILNSIWSHQMYYMFGFLFLVFIILVITCSEATILLCYFHLCAEDYHWQWRSFLTSGFTAVY 602          
BLAST of CX289138 vs. ExPASy Swiss-Prot
Match: TM9S2_MOUSE (Transmembrane 9 superfamily member 2 OS=Mus musculus GN=Tm9sf2 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 2.677e-20
Identity = 51/161 (31.68%), Postives = 73/161 (45.34%), Query Frame = 2
Query:    8 GPLFLTFCFLNTVAIAYNATAALPFGXXXXXXXXXXXXXSPLLVLGGIAGKNSKAEFQAPCRTTKYPREIPPLPWYRSAIPQMAMAGFLPFSAIYIELYYIFASVWGHRIYXXXXXXXXXXXXXXXXXXXXXXALTYFQLAAEDHEWWWRSFLCGGSTGAF 490
            G +F  F  +N +     ++AA+PFG              PL  +G   G    A  + P RT + PR+IP   +Y   +P + M G LPF  I+I+L++I  S+W H++Y                       L YF L AED+ W WRSFL  G T  +
Sbjct:  442 GIVFADFFIMNLILWGEGSSAAIPFGTLVAILALWFCISVPLTFIGAYFGFKKNA-IEHPVRTNQIPRQIPEQSFYTKPLPGIIMGGILPFGCIFIQLFFILNSIWSHQMYYMFGFLFLVFIILVITCSEATILLCYFHLCAEDYHWQWRSFLTSGFTAVY 601          
BLAST of CX289138 vs. ExPASy Swiss-Prot
Match: TM9S2_HUMAN (Transmembrane 9 superfamily member 2 OS=Homo sapiens GN=TM9SF2 PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 2.677e-20
Identity = 51/161 (31.68%), Postives = 73/161 (45.34%), Query Frame = 2
Query:    8 GPLFLTFCFLNTVAIAYNATAALPFGXXXXXXXXXXXXXSPLLVLGGIAGKNSKAEFQAPCRTTKYPREIPPLPWYRSAIPQMAMAGFLPFSAIYIELYYIFASVWGHRIYXXXXXXXXXXXXXXXXXXXXXXALTYFQLAAEDHEWWWRSFLCGGSTGAF 490
            G +F  F  +N +     ++AA+PFG              PL  +G   G    A  + P RT + PR+IP   +Y   +P + M G LPF  I+I+L++I  S+W H++Y                       L YF L AED+ W WRSFL  G T  +
Sbjct:  443 GIVFADFFIMNLILWGEGSSAAIPFGTLVAILALWFCISVPLTFIGAYFGFKKNA-IEHPVRTNQIPRQIPEQSFYTKPLPGIIMGGILPFGCIFIQLFFILNSIWSHQMYYMFGFLFLVFIILVITCSEATILLCYFHLCAEDYHWQWRSFLTSGFTAVY 602          
BLAST of CX289138 vs. ExPASy Swiss-Prot
Match: TM9S4_RAT (Transmembrane 9 superfamily member 4 OS=Rattus norvegicus GN=Tm9sf4 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.017e-19
Identity = 50/156 (32.05%), Postives = 75/156 (48.08%), Query Frame = 2
Query:   29 CF-LNTVAIAYNATAALPFGXXXXXXXXXXXXXSPLLVLGGIAGKNSKAEFQAPCRTTKYPREIPPLPWYRSAIPQMAMAGFLPFSAIYIELYYIFASVWGHRIYXXXXXXXXXXXXXXXXXXXXXXALTYFQLAAEDHEWWWRSFLCGGSTGAFI 493
            CF LN      +++ A+PF               PL+ LG   G   K  +  P RT + PR+IP   WY +    + MAG LPF A++IEL++IF+++W ++ Y                       + YFQL AED+ WWWR+FL  G +  ++
Sbjct:  429 CFVLNCFIWGKHSSGAVPFPTMVALLCMWFGISLPLVYLGYYFGFR-KQPYDNPVRTNQIPRQIPEQRWYMNRFVGILMAGILPFGAMFIELFFIFSAIWENQFYYLFGFLFLVFIILVVSCSQISIVMVYFQLCAEDYRWWWRNFLVSGGSAFYV 583          
BLAST of CX289138 vs. ExPASy Swiss-Prot
Match: TM9S4_PONAB (Transmembrane 9 superfamily member 4 OS=Pongo abelii GN=TM9SF4 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.017e-19
Identity = 50/156 (32.05%), Postives = 75/156 (48.08%), Query Frame = 2
Query:   29 CF-LNTVAIAYNATAALPFGXXXXXXXXXXXXXSPLLVLGGIAGKNSKAEFQAPCRTTKYPREIPPLPWYRSAIPQMAMAGFLPFSAIYIELYYIFASVWGHRIYXXXXXXXXXXXXXXXXXXXXXXALTYFQLAAEDHEWWWRSFLCGGSTGAFI 493
            CF LN      +++ A+PF               PL+ LG   G   K  +  P RT + PR+IP   WY +    + MAG LPF A++IEL++IF+++W ++ Y                       + YFQL AED+ WWWR+FL  G +  ++
Sbjct:  428 CFVLNCFIWGKHSSGAVPFPTMVALLCMWFGISLPLVYLGYYFGFR-KQPYDNPVRTNQIPRQIPEQRWYMNRFVGILMAGILPFGAMFIELFFIFSAIWENQFYYLFGFLFLVFIILVVSCSQISIVMVYFQLCAEDYRWWWRNFLVSGGSAFYV 582          
BLAST of CX289138 vs. ExPASy Swiss-Prot
Match: TM9S4_MOUSE (Transmembrane 9 superfamily member 4 OS=Mus musculus GN=Tm9sf4 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.017e-19
Identity = 50/156 (32.05%), Postives = 75/156 (48.08%), Query Frame = 2
Query:   29 CF-LNTVAIAYNATAALPFGXXXXXXXXXXXXXSPLLVLGGIAGKNSKAEFQAPCRTTKYPREIPPLPWYRSAIPQMAMAGFLPFSAIYIELYYIFASVWGHRIYXXXXXXXXXXXXXXXXXXXXXXALTYFQLAAEDHEWWWRSFLCGGSTGAFI 493
            CF LN      +++ A+PF               PL+ LG   G   K  +  P RT + PR+IP   WY +    + MAG LPF A++IEL++IF+++W ++ Y                       + YFQL AED+ WWWR+FL  G +  ++
Sbjct:  429 CFVLNCFIWGKHSSGAVPFPTMVALLCMWFGISLPLVYLGYYFGFR-KQPYDNPVRTNQIPRQIPEQRWYMNRFVGILMAGILPFGAMFIELFFIFSAIWENQFYYLFGFLFLVFIILVVSCSQISIVMVYFQLCAEDYRWWWRNFLVSGGSAFYV 583          
BLAST of CX289138 vs. ExPASy Swiss-Prot
Match: TM9S4_HUMAN (Transmembrane 9 superfamily member 4 OS=Homo sapiens GN=TM9SF4 PE=1 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 1.017e-19
Identity = 50/156 (32.05%), Postives = 75/156 (48.08%), Query Frame = 2
Query:   29 CF-LNTVAIAYNATAALPFGXXXXXXXXXXXXXSPLLVLGGIAGKNSKAEFQAPCRTTKYPREIPPLPWYRSAIPQMAMAGFLPFSAIYIELYYIFASVWGHRIYXXXXXXXXXXXXXXXXXXXXXXALTYFQLAAEDHEWWWRSFLCGGSTGAFI 493
            CF LN      +++ A+PF               PL+ LG   G   K  +  P RT + PR+IP   WY +    + MAG LPF A++IEL++IF+++W ++ Y                       + YFQL AED+ WWWR+FL  G +  ++
Sbjct:  428 CFVLNCFIWGKHSSGAVPFPTMVALLCMWFGISLPLVYLGYYFGFR-KQPYDNPVRTNQIPRQIPEQRWYMNRFVGILMAGILPFGAMFIELFFIFSAIWENQFYYLFGFLFLVFIILVVSCSQISIVMVYFQLCAEDYRWWWRNFLVSGGSAFYV 582          
BLAST of CX289138 vs. ExPASy Swiss-Prot
Match: TM9S4_BOVIN (Transmembrane 9 superfamily member 4 OS=Bos taurus GN=TM9SF4 PE=2 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 1.017e-19
Identity = 50/156 (32.05%), Postives = 75/156 (48.08%), Query Frame = 2
Query:   29 CF-LNTVAIAYNATAALPFGXXXXXXXXXXXXXSPLLVLGGIAGKNSKAEFQAPCRTTKYPREIPPLPWYRSAIPQMAMAGFLPFSAIYIELYYIFASVWGHRIYXXXXXXXXXXXXXXXXXXXXXXALTYFQLAAEDHEWWWRSFLCGGSTGAFI 493
            CF LN      +++ A+PF               PL+ LG   G   K  +  P RT + PR+IP   WY +    + MAG LPF A++IEL++IF+++W ++ Y                       + YFQL AED+ WWWR+FL  G +  ++
Sbjct:  428 CFVLNCFIWGKHSSGAVPFPTMVALLCMWFGISLPLVYLGYYFGFR-KQPYDNPVRTNQIPRQIPEQRWYMNRFVGILMAGILPFGAMFIELFFIFSAIWENQFYYLFGFLFLVFIILVVSCSQISIVMVYFQLCAEDYRWWWRNFLVSGGSAFYV 582          
BLAST of CX289138 vs. ExPASy Swiss-Prot
Match: YON8_SCHPO (Transmembrane 9 superfamily protein C1105.08 OS=Schizosaccharomyces pombe GN=SPBC1105.08 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.345e-16
Identity = 46/154 (29.87%), Postives = 70/154 (45.45%), Query Frame = 2
Query:   32 FLNTVAIAYNATAALPFGXXXXXXXXXXXXXSPLLVLGGIAGKNSKAEFQAPCRTTKYPREIPPLPWYRSAIPQMAMAGFLPFSAIYIELYYIFASVWGHRIYXXXXXXXXXXXXXXXXXXXXXXALTYFQLAAEDHEWWWRSFLCGGSTGAFI 493
            F N V  + ++++ +PF               PL  +G + G  S+ EF  P RT + PR+IP    + S+ P   + G +PF  I IEL+ I  S+W H +Y                         YFQL +E++ WWWRSF+  G  G ++
Sbjct:  417 FFNMVFWSKSSSSTVPFSSWLLLIFLYLLFTVPLSFVGSLIGFRSR-EFVPPVRTNQIPRQIPSHSIWLSSFPSAIIGGSIPFLVILIELFSILDSLWFHPLYFMFGFSFFCFGILVTTCIMVSIITVYFQLCSENYNWWWRSFITPGFCGIYV 569          
BLAST of CX289138 vs. ExPASy Swiss-Prot
Match: TMN1_YEAST (Transmembrane 9 superfamily member 1 OS=Saccharomyces cerevisiae GN=EMP70 PE=1 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 8.341e-14
Identity = 40/157 (25.48%), Postives = 66/157 (42.04%), Query Frame = 2
Query:    8 GPLFLTFCFLNTVAIAYNATAALPFGXXXXXXXXXXXXXSPLLVLGGIAGKNSKAEFQAPCRTTKYPREIPPLPWYRSAIPQMAMAGFLPFSAIYIELYYIFASVWGHRIYXXXXXXXXXXXXXXXXXXXXXXALTYFQLAAEDHEWWWRSFLCGGS 478
            G + L    LN   +  +++  +P                PL   G +  +      + P +T +  R+IP  PWY   IP   +AG  PF +I +ELY+I+ S+W ++I+                       +TY  L  E+ +W WR F+ GG+
Sbjct:  447 GAILLIIIALNFFLMFVHSSGVIPASTLFFMVFLWFLFSIPLSFAGSLIARKRCHWDEHPTKTNQIARQIPFQPWYLKTIPATLIAGIFPFGSIAVELYFIYTSLWFNKIFYMFGFLFFSFLLLTLTSSLVTILITYHSLCLENWKWQWRGFIIGGA 603          
The following BLAST results are available for this feature:
BLAST of CX289138 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
TM9S2_PONAB2.677e-2031.68Transmembrane 9 superfamily member 2 OS=Pongo abel... [more]
TM9S2_MOUSE2.677e-2031.68Transmembrane 9 superfamily member 2 OS=Mus muscul... [more]
TM9S2_HUMAN2.677e-2031.68Transmembrane 9 superfamily member 2 OS=Homo sapie... [more]
TM9S4_RAT1.017e-1932.05Transmembrane 9 superfamily member 4 OS=Rattus nor... [more]
TM9S4_PONAB1.017e-1932.05Transmembrane 9 superfamily member 4 OS=Pongo abel... [more]
TM9S4_MOUSE1.017e-1932.05Transmembrane 9 superfamily member 4 OS=Mus muscul... [more]
TM9S4_HUMAN1.017e-1932.05Transmembrane 9 superfamily member 4 OS=Homo sapie... [more]
TM9S4_BOVIN1.017e-1932.05Transmembrane 9 superfamily member 4 OS=Bos taurus... [more]
YON8_SCHPO2.345e-1629.87Transmembrane 9 superfamily protein C1105.08 OS=Sc... [more]
TMN1_YEAST8.341e-1425.48Transmembrane 9 superfamily member 1 OS=Saccharomy... [more]

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Properties
Property NameValue
Genbank descriptionC02009F04SK IF1 Citrus clementina cDNA clone C02009F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289138 ID=CX289138; Name=CX289138; organism=Citrus clementina; type=EST; length=545bp
TTTCTGTGGTCCTCTGTTTCTGACATTCTGCTTCCTGAACACTGTTGCCA
TTGCTTACAATGCGACAGCAGCACTGCCATTTGGCACAATTGTGGTGATA
GTCCTCATATGGACATTAGTCACATCACCTCTACTTGTGTTGGGAGGTAT
TGCTGGTAAAAACAGCAAGGCAGAGTTCCAAGCTCCTTGTCGTACGACCA
AGTACCCTCGAGAGATCCCACCACTACCTTGGTATAGGAGTGCTATTCCT
CAGATGGCAATGGCAGGTTTCCTGCCATTTAGTGCCATCTACATTGAGCT
TTACTATATTTTTGCCAGTGTTTGGGGCCACAGGATTTACACAATATACA
GCATCCTCTTTATTGTCTTTATCATTCTGTTGATTGTTACTGCTTTCATA
ACTGTGGCTTTGACTTACTTCCAACTTGCTGCTGAAGATCATGAATGGTG
GTGGAGGTCATTTCTTTGTGGTGGATCTACTGGTGCTTTCATCTATGCGT
ACTGCTTGTACTACTACTATGCACGATCAGATATGTCAGGTTTTA
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