CX289138

Overview
NameCX289138
Unique NameCX289138
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length545
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3507 contig Ccv1_Contig3507:1330..1874. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX289138 vs. ExPASy Swiss-Prot
Match: TMN2_YEAST (Transmembrane 9 superfamily member 2 OS=Saccharomyces cerevisiae GN=TMN2 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.054e-12
Identity = 39/156 (25.00%), Postives = 64/156 (41.03%), Query Frame = 2 
Query:    8 GPLFLTFCFLNTVAIAYNATAALPFGXXXXXXXXXXXXXSPLLVLGGIAGKNSKAEFQAPCRTTKYPREIPPLPWYRSAIPQMAMAGFLPFSAIYIELYYIFASVWGHRIYXXXXXXXXXXXXXXXXXXXXXXALTYFQLAAEDHEWWWRSFLCGG 475
            G +FL    +N   +  +++  +P                PL   G I         + P +T +  R+IP  PWY        +AG   F +I +ELY+I++S+W ++I+                       +TY+ L  E+  W WRSF+ GG
Sbjct:  452 GAIFLLIVIMNFFLLFAHSSGVIPARSLFFIILLWFLVSVPLSFAGSIVAHKQCNWDEHPTKTNQIARQIPYQPWYLRTAQATLIAGIFSFGSIAVELYFIYSSLWFNKIFYMFGFLLFSFLLLTLTTSLVTILITYYSLCLENWLWQWRSFIIGG 607
The following BLAST results are available for this feature:
BLAST of CX289138 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
TMN2_YEAST2.054e-1225.00Transmembrane 9 superfamily member 2 OS=Saccharomy... [more]

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Properties
Property NameValue
Genbank descriptionC02009F04SK IF1 Citrus clementina cDNA clone C02009F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289138 ID=CX289138; Name=CX289138; organism=Citrus clementina; type=EST; length=545bp
TTTCTGTGGTCCTCTGTTTCTGACATTCTGCTTCCTGAACACTGTTGCCA
TTGCTTACAATGCGACAGCAGCACTGCCATTTGGCACAATTGTGGTGATA
GTCCTCATATGGACATTAGTCACATCACCTCTACTTGTGTTGGGAGGTAT
TGCTGGTAAAAACAGCAAGGCAGAGTTCCAAGCTCCTTGTCGTACGACCA
AGTACCCTCGAGAGATCCCACCACTACCTTGGTATAGGAGTGCTATTCCT
CAGATGGCAATGGCAGGTTTCCTGCCATTTAGTGCCATCTACATTGAGCT
TTACTATATTTTTGCCAGTGTTTGGGGCCACAGGATTTACACAATATACA
GCATCCTCTTTATTGTCTTTATCATTCTGTTGATTGTTACTGCTTTCATA
ACTGTGGCTTTGACTTACTTCCAACTTGCTGCTGAAGATCATGAATGGTG
GTGGAGGTCATTTCTTTGTGGTGGATCTACTGGTGCTTTCATCTATGCGT
ACTGCTTGTACTACTACTATGCACGATCAGATATGTCAGGTTTTA
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