CX289154

Overview
NameCX289154
Unique NameCX289154
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length540
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11116 contig Ccv1_Contig11116:1017..1556. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX289154 vs. ExPASy Swiss-Prot
Match: DCHS_HUMAN (Histidine decarboxylase OS=Homo sapiens GN=HDC PE=2 SV=2)

HSP 1 Score: 177.948 bits (450), Expect = 2.583e-44
Identity = 86/176 (48.86%), Postives = 113/176 (64.20%), Query Frame = 2
Query:    5 DSLMAQINSDVEVGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLWVKDPRALVSSLSTNPEYLKNKATESMQVVDYKDWQITLSRRFRSLKLWFVIRNYGVANLRHFLRSHVNMAKLFERLVSGD 532
            ++L   I  D + GL+P+F+CAT+GTT + A D L  L  +  + G+W+H+DAAYAG+A +CPEFR F+ G+E ADSF+ N  KW     DC   WVKD   L  + S NP YL++    S    D+  WQI LSRRFRS+KLWFVIR++GV NL+  +R    MAK FE LV  D
Sbjct:  222 EALQKAIEEDKQRGLVPVFVCATLGTTGVCAFDCLSELGPICAREGLWLHIDAAYAGTAFLCPEFRGFLKGIEYADSFTFNPSKWMMVHFDCTGFWVKDKYKLQQTFSVNPIYLRH--ANSGVATDFMHWQIPLSRRFRSVKLWFVIRSFGVKNLQAHVRHGTEMAKYFESLVRND 395          
BLAST of CX289154 vs. ExPASy Swiss-Prot
Match: DDC_DROME (Aromatic-L-amino-acid decarboxylase OS=Drosophila melanogaster GN=Ddc PE=1 SV=4)

HSP 1 Score: 176.407 bits (446), Expect = 7.517e-44
Identity = 86/177 (48.59%), Postives = 109/177 (61.58%), Query Frame = 2
Query:    8 SLMAQINSDVEVGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLWVKDPRALVSSLSTNPEYLKNKATESMQVVDYKDWQITLSRRFRSLKLWFVIRNYGVANLRHFLRSHVNMAKLFERLVSGDKR 538
            +L   I  DV  GLIP +   T+GTT   A D L     V  +  +W+HVDAAYAGSA ICPE+RH + G+E ADSF+ N HKW     DC  +W+KDP  +V++ + +P YLK+    S    DY+ WQI L RRFR+LKLWFV+R YGV NL+  +R H N AK F  L   D R
Sbjct:  255 ALEKAIEQDVAEGLIPFYAVVTLGTTNSCAFDYLDECGPVGNKHNLWIHVDAAYAGSAFICPEYRHLMKGIESADSFNFNPHKWMLVNFDCSAMWLKDPSWVVNAFNVDPLYLKHDMQGS--APDYRHWQIPLGRRFRALKLWFVLRLYGVENLQAHIRRHCNFAKQFGDLCVADSR 429          
BLAST of CX289154 vs. ExPASy Swiss-Prot
Match: DDC_PIG (Aromatic-L-amino-acid decarboxylase OS=Sus scrofa GN=DDC PE=1 SV=2)

HSP 1 Score: 175.637 bits (444), Expect = 1.282e-43
Identity = 83/177 (46.89%), Postives = 109/177 (61.58%), Query Frame = 2
Query:    8 SLMAQINSDVEVGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLWVKDPRALVSSLSTNPEYLKNKATESMQVVDYKDWQITLSRRFRSLKLWFVIRNYGVANLRHFLRSHVNMAKLFERLVSGDKR 538
            +L   +  D   GLIP F+ AT+GTT+  + D L  +  +  +  IW+HVDAAYAGSA ICPEFRH ++GVE ADSF+ N HKW     DC  +WVK    L  +   +P YLK+    S  + DY+ WQ+ L RRFRSLK+WFV R YGV  L+ ++R HV ++  FE  V  D R
Sbjct:  221 ALQEALERDKAAGLIPFFVVATLGTTSCCSFDNLLEVGPICHEEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVNFDCSAMWVKRRTDLTGAFKLDPVYLKHSHQGSGLITDYRHWQLPLGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQDPR 397          
BLAST of CX289154 vs. ExPASy Swiss-Prot
Match: DDC_DROSI (Aromatic-L-amino-acid decarboxylase OS=Drosophila simulans GN=Ddc PE=3 SV=2)

HSP 1 Score: 175.252 bits (443), Expect = 1.675e-43
Identity = 85/177 (48.02%), Postives = 109/177 (61.58%), Query Frame = 2
Query:    8 SLMAQINSDVEVGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLWVKDPRALVSSLSTNPEYLKNKATESMQVVDYKDWQITLSRRFRSLKLWFVIRNYGVANLRHFLRSHVNMAKLFERLVSGDKR 538
            +L   I  D+  GLIP +   T+GTT   A D L     V  +  +W+HVDAAYAGSA ICPE+RH + G+E ADSF+ N HKW     DC  +W+KDP  +V++ + +P YLK+    S    DY+ WQI L RRFR+LKLWFV+R YGV NL+  +R H N AK F  L   D R
Sbjct:  255 ALEKAIEQDLAEGLIPFYAVVTLGTTNSCAFDYLDECGPVGNKHNLWIHVDAAYAGSAFICPEYRHLMKGIESADSFNFNPHKWMLVNFDCSAMWLKDPSWVVNAFNVDPLYLKHDMQGS--APDYRHWQIPLGRRFRALKLWFVLRLYGVENLQAHIRRHCNFAKQFGDLCVADSR 429          
BLAST of CX289154 vs. ExPASy Swiss-Prot
Match: DCHS_RAT (Histidine decarboxylase OS=Rattus norvegicus GN=Hdc PE=2 SV=2)

HSP 1 Score: 173.326 bits (438), Expect = 6.363e-43
Identity = 85/176 (48.30%), Postives = 112/176 (63.64%), Query Frame = 2
Query:    5 DSLMAQINSDVEVGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLWVKDPRALVSSLSTNPEYLKNKATESMQVVDYKDWQITLSRRFRSLKLWFVIRNYGVANLRHFLRSHVNMAKLFERLVSGD 532
            ++L   I  D + GL+P+F+CAT+GTT + A D L  L  +  + G+W+HVDAAYAG+A + PE R F+ G+E ADSF+ N  KW     DC   WVKD   L  + S NP YL++    S    D+  WQI LSRRFRS+KLWFVIR++GV NL+  +R   +MAK FE LV  D
Sbjct:  225 EALQKAIEEDKQQGLVPVFVCATLGTTGVCAFDKLSELGPICAREGLWLHVDAAYAGTAFLRPELRGFLKGIEYADSFTFNPSKWMMVHFDCTGFWVKDKYKLQQTFSVNPIYLRH--ANSGVATDFMHWQIPLSRRFRSIKLWFVIRSFGVKNLQAHVRHGTDMAKYFESLVRSD 398          
BLAST of CX289154 vs. ExPASy Swiss-Prot
Match: DDC_DROLE (Aromatic-L-amino-acid decarboxylase (Fragment) OS=Drosophila lebanonensis GN=Ddc PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 8.311e-43
Identity = 84/178 (47.19%), Postives = 110/178 (61.80%), Query Frame = 2
Query:    5 DSLMAQINSDVEVGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLWVKDPRALVSSLSTNPEYLKNKATESMQVVDYKDWQITLSRRFRSLKLWFVIRNYGVANLRHFLRSHVNMAKLFERLVSGDKR 538
            ++L   I  D+  GLIP +   T+GTT   A D L     VA +  +WVHVDAAYAGSA ICPE+RH + G+E ADSF+ N HKW     DC  +W+KDP  +V++ + +P YLK+    S    DY+ WQI + RRFR+LKLWFV+R YGV NL+  +R H   A+ F  L   D R
Sbjct:  146 EALEKAIEQDLADGLIPFYAVVTLGTTNSCAFDRLDECGPVANKHNVWVHVDAAYAGSAFICPEYRHLMKGIETADSFNFNPHKWMLVNFDCSAMWLKDPSWVVNAFNVDPLYLKHDMQGS--APDYRHWQIPIGRRFRALKLWFVLRLYGVENLQAHIRRHCTYAQQFAELCVQDSR 321          
BLAST of CX289154 vs. ExPASy Swiss-Prot
Match: DCHS_DROME (Histidine decarboxylase OS=Drosophila melanogaster GN=Hdc PE=1 SV=2)

HSP 1 Score: 163.31 bits (412), Expect = 6.585e-40
Identity = 79/176 (44.89%), Postives = 112/176 (63.64%), Query Frame = 2
Query:   11 LMAQINSDVEVGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLWVKDPRALVSSLSTNPEYLKNKATESMQVVDYKDWQITLSRRFRSLKLWFVIRNYGVANLRHFLRSHVNMAKLFERLVSGDKR 538
            L   I  D++ GL+P ++CAT+GTT   + D L+ +  V  +  +W+HVDAAYAGSA ICPEFR ++ G+E ADS + N  KW     D   LWV+D  A+  + +  P YL+++   S   VD+  WQI LSRRFR+LK+WFV+R+YG+  L+  +R  V +A+ FE LV  D R
Sbjct:  223 LREAIEDDIKQGLVPFWVCATLGTTGSCSFDNLEEIGIVCAEHHLWLHVDAAYAGSAFICPEFRTWLRGIERADSIAFNPSKWLMVHFDATALWVRDSTAVHRTFNVEPLYLQHE--NSGVAVDFMHWQIPLSRRFRALKVWFVLRSYGIKGLQRHIREGVRLAQKFEALVLADHR 396          
BLAST of CX289154 vs. ExPASy Swiss-Prot
Match: L2AM_DROSI (Alpha-methyldopa hypersensitive protein (Fragment) OS=Drosophila simulans GN=amd PE=2 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 1.518e-36
Identity = 72/178 (40.45%), Postives = 102/178 (57.30%), Query Frame = 2
Query:    5 DSLMAQINSDVEVGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLWVKDPRALVSSLSTNPEYLKNKATESMQVVDYKDWQITLSRRFRSLKLWFVIRNYGVANLRHFLRSHVNMAKLFERLVSGDKR 538
            D+L   I  DV  G IP+   AT+GTT   A D ++ L  V ++F +W+HVDAAYAG A    E      G++  DS + N HK+     DC  +W++D   +V S + +  YLK+K     Q+ D++ WQI L RRFR+LK+W   R  G   LR+ +R H+ +AK FE+LV  D R
Sbjct:  139 DTLRGAIEEDVAAGRIPVICVATLGTTGTCAYDDIESLSAVCEEFKVWLHVDAAYAGGAFALEECSDLRKGLDRVDSLNFNLHKFMLVNFDCSAMWLRDANKVVDSFNVDRIYLKHKHEGQSQIPDFRHWQIPLGRRFRALKVWITFRTLGAEGLRNHVRKHIELAKQFEQLVLKDSR 316          
BLAST of CX289154 vs. ExPASy Swiss-Prot
Match: L2AM_DROME (Alpha-methyldopa hypersensitive protein OS=Drosophila melanogaster GN=amd PE=2 SV=2)

HSP 1 Score: 152.14 bits (383), Expect = 1.518e-36
Identity = 72/178 (40.45%), Postives = 102/178 (57.30%), Query Frame = 2
Query:    5 DSLMAQINSDVEVGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLWVKDPRALVSSLSTNPEYLKNKATESMQVVDYKDWQITLSRRFRSLKLWFVIRNYGVANLRHFLRSHVNMAKLFERLVSGDKR 538
            D+L   I  DV  G IP+   AT+GTT   A D ++ L  V ++F +W+HVDAAYAG A    E      G++  DS + N HK+     DC  +W++D   +V S + +  YLK+K     Q+ D++ WQI L RRFR+LK+W   R  G   LR+ +R H+ +AK FE+LV  D R
Sbjct:  220 DTLRGAIEEDVAAGRIPVICVATLGTTGTCAYDDIESLSAVCEEFKVWLHVDAAYAGGAFALEECSDLRKGLDRVDSLNFNLHKFMLVNFDCSAMWLRDANKVVDSFNVDRIYLKHKHEGQSQIPDFRHWQIPLGRRFRALKVWITFRTLGAEGLRNHVRKHIELAKQFEQLVLKDSR 397          
BLAST of CX289154 vs. ExPASy Swiss-Prot
Match: L2AM_DROLE (Alpha-methyldopa hypersensitive protein (Fragment) OS=Drosophila lebanonensis GN=amd PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 5.769e-36
Identity = 72/177 (40.68%), Postives = 99/177 (55.93%), Query Frame = 2
Query:    8 SLMAQINSDVEVGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLWVKDPRALVSSLSTNPEYLKNKATESMQVVDYKDWQITLSRRFRSLKLWFVIRNYGVANLRHFLRSHVNMAKLFERLVSGDKR 538
            +L + I  DV  GLIP+   AT+GTT   A D +  L  V +Q+ +W+HVDAAYAG A    E      G+E  DS + N HK+     DC  +W++D   +V S + +  YLK+K     Q+ D++ WQI L RRFR+LK+W   R  G   LR  +R H+ +AK FE  V  D R
Sbjct:  150 ALRSAIEQDVTAGLIPVICIATLGTTGTCAYDDVDSLATVCEQYNVWLHVDAAYAGGAFALDECSELRRGLERVDSLNFNLHKFMLVNFDCSAMWLRDANKVVDSFNVDRIYLKHKYEGQTQIPDFRHWQIPLGRRFRALKVWITFRTLGAEGLRAHVRKHIELAKKFEVFVLADAR 326          
The following BLAST results are available for this feature:
BLAST of CX289154 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
DCHS_HUMAN2.583e-4448.86Histidine decarboxylase OS=Homo sapiens GN=HDC PE=... [more]
DDC_DROME7.517e-4448.59Aromatic-L-amino-acid decarboxylase OS=Drosophila ... [more]
DDC_PIG1.282e-4346.89Aromatic-L-amino-acid decarboxylase OS=Sus scrofa ... [more]
DDC_DROSI1.675e-4348.02Aromatic-L-amino-acid decarboxylase OS=Drosophila ... [more]
DCHS_RAT6.363e-4348.30Histidine decarboxylase OS=Rattus norvegicus GN=Hd... [more]
DDC_DROLE8.311e-4347.19Aromatic-L-amino-acid decarboxylase (Fragment) OS=... [more]
DCHS_DROME6.585e-4044.89Histidine decarboxylase OS=Drosophila melanogaster... [more]
L2AM_DROSI1.518e-3640.45Alpha-methyldopa hypersensitive protein (Fragment)... [more]
L2AM_DROME1.518e-3640.45Alpha-methyldopa hypersensitive protein OS=Drosoph... [more]
L2AM_DROLE5.769e-3640.68Alpha-methyldopa hypersensitive protein (Fragment)... [more]

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Properties
Property NameValue
Genbank descriptionC02009G09SK IF1 Citrus clementina cDNA clone C02009G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289154 ID=CX289154; Name=CX289154; organism=Citrus clementina; type=EST; length=540bp
GCCAGACTCACTGATGGCACAAATCAACTCGGATGTAGAAGTTGGACTGA
TCCCATTATTTCTATGTGCCACAATCGGGACGACTGCAATAACTGCTGTT
GATCCCTTAAAGCCACTTTGCGACGTAGCAAAACAATTCGGAATATGGGT
CCACGTTGATGCTGCATATGCTGGAAGTGCCTGCATTTGCCCGGAGTTTC
GACATTTTATTGACGGAGTTGAAGGTGCGGATTCGTTTAGTCTCAATGCA
CATAAATGGTTCTTTGCAACATTAGATTGTTGTTGCCTCTGGGTGAAGGA
TCCAAGAGCTCTTGTGAGCTCACTCTCAACAAATCCTGAGTACTTGAAGA
ACAAAGCCACCGAGTCGATGCAAGTGGTGGATTACAAAGATTGGCAAATA
ACTCTGAGTCGAAGATTTCGTTCGCTGAAACTATGGTTTGTGATAAGAAA
CTATGGCGTGGCAAATCTAAGGCACTTCCTTCGCAGCCATGTAAACATGG
CCAAGCTTTTTGAAAGGCTTGTAAGCGGTGATAAGAGGTT
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