CX289158

Overview
NameCX289158
Unique NameCX289158
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length571
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289158 vs. ExPASy Swiss-Prot
Match: ARFF_DICDI (ADP-ribosylation factor F OS=Dictyostelium discoideum GN=arrF PE=3 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 1.345e-44
Identity = 84/164 (51.22%), Postives = 116/164 (70.73%), Query Frame = 2
Query:   86 FTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRML--NEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGL 571
            F  +FS    K+ +RILM+GLD AGK+T+LYKLK G+++ TIPTIGFNVE +EYKN+S  VWD+GGQ+ IR LWR Y Q T   IFVVDS DR+R  E + E+  ++  N++E  +A LL+FANKQD+ N +  AE+ + L L+SL  + W++Q   A  G+G+
Sbjct:   13 FVNIFSLFEGKRNIRILMIGLDGAGKSTLLYKLKFGDVIRTIPTIGFNVEIIEYKNLSMNVWDIGGQNNIRALWRQYDQRTDVFIFVVDSTDRERFDEVKQEIKNIIEQNKNESSNASLLIFANKQDMLNPITPAELVNSLDLNSLTNKKWHVQPCSAVRGDGI 176          
BLAST of CX289158 vs. ExPASy Swiss-Prot
Match: ARL5B_MOUSE (ADP-ribosylation factor-like protein 5B OS=Mus musculus GN=Arl5b PE=2 SV=3)

HSP 1 Score: 177.178 bits (448), Expect = 5.109e-44
Identity = 86/166 (51.81%), Postives = 118/166 (71.08%), Query Frame = 2
Query:   74 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGL 571
            MGL F KL+S LF  +E ++++VGLD AGKTTILY+  + E+V T PTIG NVE +  KN  F +WD+GGQ+ +R  W  Y+ NT+ +I VVDS DR+R+   ++EL+RML  ++LR A +L+FANKQD+   M AAEI+  L L S++   W+IQS CA +GEGL
Sbjct:    1 MGLIFAKLWS-LFCNQEHKVIIVGLDNAGKTTILYQFLMNEVVHTSPTIGSNVEEIVVKNTHFLMWDIGGQESLRSSWNTYYSNTEFIILVVDSIDRERLAITKEELYRMLAHEDLRKAAVLIFANKQDMKGCMTAAEISKYLTLSSIKDHPWHIQSCCALTGEGL 165          
BLAST of CX289158 vs. ExPASy Swiss-Prot
Match: ARL5B_HUMAN (ADP-ribosylation factor-like protein 5B OS=Homo sapiens GN=ARL5B PE=1 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 5.109e-44
Identity = 86/166 (51.81%), Postives = 118/166 (71.08%), Query Frame = 2
Query:   74 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGL 571
            MGL F KL+S LF  +E ++++VGLD AGKTTILY+  + E+V T PTIG NVE +  KN  F +WD+GGQ+ +R  W  Y+ NT+ +I VVDS DR+R+   ++EL+RML  ++LR A +L+FANKQD+   M AAEI+  L L S++   W+IQS CA +GEGL
Sbjct:    1 MGLIFAKLWS-LFCNQEHKVIIVGLDNAGKTTILYQFLMNEVVHTSPTIGSNVEEIVVKNTHFLMWDIGGQESLRSSWNTYYSNTEFIILVVDSIDRERLAITKEELYRMLAHEDLRKAAVLIFANKQDMKGCMTAAEISKYLTLSSIKDHPWHIQSCCALTGEGL 165          
BLAST of CX289158 vs. ExPASy Swiss-Prot
Match: ARFD_DICDI (ADP-ribosylation factor D OS=Dictyostelium discoideum GN=arrD PE=3 SV=2)

HSP 1 Score: 177.178 bits (448), Expect = 5.109e-44
Identity = 78/166 (46.99%), Postives = 121/166 (72.89%), Query Frame = 2
Query:   74 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGL 571
            MG++ +  FS +F  K +++LM+GLD +GKTTILYKL L E+V+TI T+G+NVET+++K+++ T+WD+ G+++IR LW+ ++     +IFVVDS+DR R+ EA  EL +++ E+EL+   LL+FA KQD  + M   E+TD+LGLH ++ R WY+Q T    G G+
Sbjct:    1 MGISSSNPFSSIFKSKAIKLLMLGLDGSGKTTILYKLMLNEVVSTISTLGYNVETIQHKHLNLTLWDLAGEERIRTLWKPFYNKCTAIIFVVDSSDRLRIDEAASELAKLMKEEELKGCSLLIFATKQDCISPMEIPELTDQLGLHDIKDRRWYVQPTRTLEGIGI 166          
BLAST of CX289158 vs. ExPASy Swiss-Prot
Match: ARL5A_MOUSE (ADP-ribosylation factor-like protein 5A OS=Mus musculus GN=Arl5a PE=2 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 1.942e-43
Identity = 83/166 (50.00%), Postives = 118/166 (71.08%), Query Frame = 2
Query:   74 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGL 571
            MG+ FT+++ RLF  +E ++++VGLD AGKTTILY+  + E+V T PTIG NVE +   N  F +WD+GGQ+ +RP W  Y+ NT+ +I VVDS DR+R+   R+EL++ML  ++LR A LL+FANKQD+   M  AEI+  L L S++   W+IQ+ CA +GEGL
Sbjct:    1 MGILFTRIW-RLFNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVVNNTRFLMWDIGGQESLRPSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGL 165          
BLAST of CX289158 vs. ExPASy Swiss-Prot
Match: ARL5A_RAT (ADP-ribosylation factor-like protein 5A OS=Rattus norvegicus GN=Arl5a PE=2 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 1.644e-42
Identity = 82/166 (49.40%), Postives = 117/166 (70.48%), Query Frame = 2
Query:   74 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGL 571
            MG+ FT+++ RLF  +E ++++VGLD AGKTTILY+  + E+V T PTIG NVE +   N  F +WD+GGQ+ +R  W  Y+ NT+ +I VVDS DR+R+   R+EL++ML  ++LR A LL+FANKQD+   M  AEI+  L L S++   W+IQ+ CA +GEGL
Sbjct:    1 MGILFTRIW-RLFNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVVNNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGL 165          
BLAST of CX289158 vs. ExPASy Swiss-Prot
Match: ARL5A_HUMAN (ADP-ribosylation factor-like protein 5A OS=Homo sapiens GN=ARL5A PE=1 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 1.644e-42
Identity = 82/166 (49.40%), Postives = 117/166 (70.48%), Query Frame = 2
Query:   74 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGL 571
            MG+ FT+++ RLF  +E ++++VGLD AGKTTILY+  + E+V T PTIG NVE +   N  F +WD+GGQ+ +R  W  Y+ NT+ +I VVDS DR+R+   R+EL++ML  ++LR A LL+FANKQD+   M  AEI+  L L S++   W+IQ+ CA +GEGL
Sbjct:    1 MGILFTRIW-RLFNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGL 165          
BLAST of CX289158 vs. ExPASy Swiss-Prot
Match: ARL5A_BOVIN (ADP-ribosylation factor-like protein 5A OS=Bos taurus GN=ARL5A PE=2 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 1.644e-42
Identity = 82/166 (49.40%), Postives = 117/166 (70.48%), Query Frame = 2
Query:   74 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGL 571
            MG+ FT+++ RLF  +E ++++VGLD AGKTTILY+  + E+V T PTIG NVE +   N  F +WD+GGQ+ +R  W  Y+ NT+ +I VVDS DR+R+   R+EL++ML  ++LR A LL+FANKQD+   M  AEI+  L L S++   W+IQ+ CA +GEGL
Sbjct:    1 MGILFTRIW-RLFNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKGCMTVAEISQFLKLTSIKDHQWHIQACCALTGEGL 165          
BLAST of CX289158 vs. ExPASy Swiss-Prot
Match: ARL5_DICDI (ADP-ribosylation factor-like protein 5 OS=Dictyostelium discoideum GN=arl5 PE=3 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 5.287e-41
Identity = 75/162 (46.30%), Postives = 115/162 (70.99%), Query Frame = 2
Query:   86 FTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGL 571
            F  +++R F   E ++++VGL+AAGKTT LYKL L E+V+T PT+G N+E   Y+NI   +WD+GGQD +R  W  Y+ NTQ +I V+DS DR RV   ++EL +ML  + L+ +++L++ANKQDL +AM+  E++  L LHS++   ++IQ+ CA +G+GL
Sbjct:    8 FASIWNRFFNNAEYKVIIVGLNAAGKTTTLYKLLLDEVVSTTPTVGSNLEEFVYRNIRLLMWDLGGQDLLRSTWNQYYINTQAVILVIDSTDRARVNLIKEELFKMLAHENLKKSIILIYANKQDLKDAMSPTELSTLLSLHSIKDHDYHIQACCALTGQGL 169          
BLAST of CX289158 vs. ExPASy Swiss-Prot
Match: ARL5_CAEEL (ADP-ribosylation factor-like protein 5 OS=Caenorhabditis elegans GN=arl-5 PE=2 SV=3)

HSP 1 Score: 164.851 bits (416), Expect = 2.624e-40
Identity = 82/167 (49.10%), Postives = 109/167 (65.27%), Query Frame = 2
Query:   74 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLR-QRHWYIQSTCATSGEGL 571
            MGL   KLF   +  K+ +I++VGLD AGKTTILY     + V T PTIG NVE V Y+N+ F +WD+GGQ+ +R  W  Y+  T  +I V+DS+D  R+   +++LH ML  ++L  A +LV ANKQDLP AMN AE++ +LGL +LR  R W I   CA  GEGL
Sbjct:    1 MGLIMAKLFQSWWIGKKYKIIVVGLDNAGKTTILYNYVTKDQVETKPTIGSNVEEVSYRNLDFVIWDIGGQESLRKSWSTYYVQTDVVIVVIDSSDTTRIPIMKEQLHNMLQHEDLARAHILVLANKQDLPGAMNPAEVSTQLGLQTLRGARKWQINGCCAVKGEGL 167          
The following BLAST results are available for this feature:
BLAST of CX289158 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 217
Match NameE-valueIdentityDescription
ARFF_DICDI1.345e-4451.22ADP-ribosylation factor F OS=Dictyostelium discoid... [more]
ARL5B_MOUSE5.109e-4451.81ADP-ribosylation factor-like protein 5B OS=Mus mus... [more]
ARL5B_HUMAN5.109e-4451.81ADP-ribosylation factor-like protein 5B OS=Homo sa... [more]
ARFD_DICDI5.109e-4446.99ADP-ribosylation factor D OS=Dictyostelium discoid... [more]
ARL5A_MOUSE1.942e-4350.00ADP-ribosylation factor-like protein 5A OS=Mus mus... [more]
ARL5A_RAT1.644e-4249.40ADP-ribosylation factor-like protein 5A OS=Rattus ... [more]
ARL5A_HUMAN1.644e-4249.40ADP-ribosylation factor-like protein 5A OS=Homo sa... [more]
ARL5A_BOVIN1.644e-4249.40ADP-ribosylation factor-like protein 5A OS=Bos tau... [more]
ARL5_DICDI5.287e-4146.30ADP-ribosylation factor-like protein 5 OS=Dictyost... [more]
ARL5_CAEEL2.624e-4049.10ADP-ribosylation factor-like protein 5 OS=Caenorha... [more]

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Properties
Property NameValue
Genbank descriptionC02009H01SK IF1 Citrus clementina cDNA clone C02009H01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289158 ID=CX289158; Name=CX289158; organism=Citrus clementina; type=EST; length=571bp
GACAAAGCTCTTTCTCTTGACTTGACCATCAACGGCAAAATCTAAATCCA
TCACAAGTTAATTAACAACAGAGATGGGATTGACGTTCACGAAGCTGTTT
AGTCGGTTATTTGCGAAGAAGGAGATGCGAATTCTGATGGTGGGTCTCGA
CGCCGCCGGTAAGACCACTATTTTGTACAAGCTTAAGCTCGGTGAGATCG
TCACCACCATCCCTACAATCGGTTTTAATGTGGAGACGGTTGAATACAAG
AACATTAGCTTCACGGTTTGGGATGTCGGAGGTCAGGACAAGATCCGTCC
ATTGTGGAGGCACTATTTTCAGAACACTCAGGGCCTCATTTTTGTGGTGG
ATAGCAATGACAGGGATAGAGTAGTTGAGGCAAGGGATGAGTTGCACCGA
ATGTTGAATGAGGATGAATTGAGGGATGCTGTTCTGCTTGTATTTGCTAA
CAAACAAGATCTTCCGAATGCAATGAATGCTGCAGAAATAACTGACAAGC
TCGGTCTTCATTCTCTTCGCCAGCGACACTGGTATATCCAGAGCACATGT
GCAACCTCTGGAGAGGGTCTT
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