CX289161

Overview
NameCX289161
Unique NameCX289161
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length498
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX289161 vs. ExPASy Swiss-Prot
Match: ACT5_DIPDE (Actin-5 (Fragment) OS=Diphyllobothrium dendriticum GN=ACT5 PE=2 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 5.833e-58
Identity = 105/119 (88.24%), Postives = 112/119 (94.12%), Query Frame = 3 
Query:    3 CPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 359
            CPE LFQPS +GME+AGIHETTYNSIMKCDVDIRKDLY N VLSGGSTM+PGI+DRM KEI+ALAPS+MKIK+VAPPERKYSVWIGGSILASLSTFQQMWISK EYDESGP IVHRKCF
Sbjct:  253 CPEALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYANTVLSGGSTMYPGISDRMQKEISALAPSTMKIKIVAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPGIVHRKCF 371
[Close]
BLAST of CX289161 vs. ExPASy Swiss-Prot
Match: ACT3_XENLA (Actin, alpha sarcomeric/skeletal OS=Xenopus laevis PE=2 SV=2)

HSP 1 Score: 223.016 bits (567), Expect = 5.833e-58
Identity = 104/119 (87.39%), Postives = 113/119 (94.96%), Query Frame = 3 
Query:    3 CPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 359
            CPE LFQPS IGME+AGIHETTYNSIMKCD+DIRKDLY N VLSGG+TM+PGIADRM KEITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWI+K EYDE+GPSIVHRKCF
Sbjct:  259 CPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQEYDEAGPSIVHRKCF 377
[Close]
BLAST of CX289161 vs. ExPASy Swiss-Prot
Match: ACT2_XENTR (Actin, alpha sarcomeric/cardiac OS=Xenopus tropicalis PE=2 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 5.833e-58
Identity = 104/119 (87.39%), Postives = 113/119 (94.96%), Query Frame = 3 
Query:    3 CPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 359
            CPE LFQPS IGME+AGIHETTYNSIMKCD+DIRKDLY N VLSGG+TM+PGIADRM KEITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWI+K EYDE+GPSIVHRKCF
Sbjct:  259 CPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQEYDEAGPSIVHRKCF 377
[Close]
BLAST of CX289161 vs. ExPASy Swiss-Prot
Match: ACT1_MAIZE (Actin-1 OS=Zea mays GN=ACT1 PE=3 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 5.833e-58
Identity = 104/119 (87.39%), Postives = 111/119 (93.28%), Query Frame = 3 
Query:    3 CPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 359
            CPEVLFQPSL+GME+  +HE TYNSIMKCDVDIRKDLYGN+VLSGG TMFPGIADRMSKEIT+L PSSMK+KVVAPP RKYSVWIGGSILASLSTFQQMWISKGEYDE+GP IVH KCF
Sbjct:  257 CPEVLFQPSLVGMESPSVHEATYNSIMKCDVDIRKDLYGNVVLSGGFTMFPGIADRMSKEITSLVPSSMKVKVVAPPRRKYSVWIGGSILASLSTFQQMWISKGEYDETGPGIVHMKCF 375
[Close]
BLAST of CX289161 vs. ExPASy Swiss-Prot
Match: ACT1_CAEEL (Actin-1/3 OS=Caenorhabditis elegans GN=act-1 PE=1 SV=2)

HSP 1 Score: 223.016 bits (567), Expect = 5.833e-58
Identity = 103/119 (86.55%), Postives = 113/119 (94.96%), Query Frame = 3 
Query:    3 CPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 359
            CPE +FQPS +GME+AGIHET+YNSIMKCD+DIRKDLY N VLSGG+TM+PGIADRM KEITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  258 CPEAMFQPSFLGMESAGIHETSYNSIMKCDIDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
[Close]
BLAST of CX289161 vs. ExPASy Swiss-Prot
Match: ACTG_XENTR (Actin, cytoplasmic 2 OS=Xenopus tropicalis GN=actg1 PE=2 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 7.618e-58
Identity = 104/119 (87.39%), Postives = 112/119 (94.12%), Query Frame = 3 
Query:    3 CPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 359
            CPE LFQPS +GME+ GIHETT+NSIMKCDVDIRKDLY N VLSGG+TM+PGIADRM KEITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  257 CPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375
[Close]
BLAST of CX289161 vs. ExPASy Swiss-Prot
Match: ACTG_XENLA (Actin, cytoplasmic 2 OS=Xenopus laevis GN=actg1 PE=2 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 7.618e-58
Identity = 104/119 (87.39%), Postives = 112/119 (94.12%), Query Frame = 3 
Query:    3 CPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 359
            CPE LFQPS +GME+ GIHETT+NSIMKCDVDIRKDLY N VLSGG+TM+PGIADRM KEITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  257 CPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375
[Close]
BLAST of CX289161 vs. ExPASy Swiss-Prot
Match: ACTG_TRIVU (Actin, cytoplasmic 2 OS=Trichosurus vulpecula GN=ACTG1 PE=1 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 7.618e-58
Identity = 104/119 (87.39%), Postives = 112/119 (94.12%), Query Frame = 3 
Query:    3 CPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 359
            CPE LFQPS +GME+ GIHETT+NSIMKCDVDIRKDLY N VLSGG+TM+PGIADRM KEITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  257 CPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375
[Close]
BLAST of CX289161 vs. ExPASy Swiss-Prot
Match: ACTG_TRISC (Actin, cytoplasmic 2 OS=Triakis scyllium GN=actg1 PE=2 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 7.618e-58
Identity = 104/119 (87.39%), Postives = 112/119 (94.12%), Query Frame = 3 
Query:    3 CPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 359
            CPE LFQPS +GME+ GIHETT+NSIMKCDVDIRKDLY N VLSGG+TM+PGIADRM KEITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  257 CPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375
[Close]
BLAST of CX289161 vs. ExPASy Swiss-Prot
Match: ACTG_RAT (Actin, cytoplasmic 2 OS=Rattus norvegicus GN=Actg1 PE=1 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 7.618e-58
Identity = 104/119 (87.39%), Postives = 112/119 (94.12%), Query Frame = 3 
Query:    3 CPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 359
            CPE LFQPS +GME+ GIHETT+NSIMKCDVDIRKDLY N VLSGG+TM+PGIADRM KEITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  257 CPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375
The following BLAST results are available for this feature:
BLAST of CX289161 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 475
Match NameE-valueIdentityDescription
ACT5_DIPDE5.833e-5888.24Actin-5 (Fragment) OS=Diphyllobothrium dendriticum... [more]
ACT3_XENLA5.833e-5887.39Actin, alpha sarcomeric/skeletal OS=Xenopus laevis... [more]
ACT2_XENTR5.833e-5887.39Actin, alpha sarcomeric/cardiac OS=Xenopus tropica... [more]
ACT1_MAIZE5.833e-5887.39Actin-1 OS=Zea mays GN=ACT1 PE=3 SV=1[more]
ACT1_CAEEL5.833e-5886.55Actin-1/3 OS=Caenorhabditis elegans GN=act-1 PE=1 ... [more]
ACTG_XENTR7.618e-5887.39Actin, cytoplasmic 2 OS=Xenopus tropicalis GN=actg... [more]
ACTG_XENLA7.618e-5887.39Actin, cytoplasmic 2 OS=Xenopus laevis GN=actg1 PE... [more]
ACTG_TRIVU7.618e-5887.39Actin, cytoplasmic 2 OS=Trichosurus vulpecula GN=A... [more]
ACTG_TRISC7.618e-5887.39Actin, cytoplasmic 2 OS=Triakis scyllium GN=actg1 ... [more]
ACTG_RAT7.618e-5887.39Actin, cytoplasmic 2 OS=Rattus norvegicus GN=Actg1... [more]

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Properties
Property NameValue
Genbank descriptionC02009H04SK IF1 Citrus clementina cDNA clone C02009H04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289161 ID=CX289161; Name=CX289161; organism=Citrus clementina; type=EST; length=498bp
GTTGCCCAGAAGTTCTGTTCCAGCCATCTCTCATCGGAATGGAAGCTGCT
GGTATTCATGAGACTACCTACAACTCCATCATGAAGTGTGATGTGGATAT
TAGAAAGGATCTGTATGGTAACATTGTTCTCAGTGGGGGTTCAACTATGT
TCCCCGGTATTGCCGACCGTATGAGCAAGGAAATCACAGCACTTGCTCCA
AGCAGCATGAAGATCAAGGTCGTGGCTCCACCAGAGAGAAAATACAGTGT
TTGGATTGGAGGATCAATCCTTGCATCCCTCAGCACCTTCCAGCAGATGT
GGATCTCAAAGGGCGAGTATGATGAGTCTGGTCCATCCATTGTCCACAGG
AAATGCTTCTAAGTTCTTTAAGTGCTTGATGGGTGAGTTCTTTTTTTCCA
TTTAGTTGGTTTTTTGTGTCTCGTTTCGCGAACTCAAGTTGGTTGACATG
GAGAAGTGCTAAGGTTGGGGCCATTGAAGGAGGCATATCTCGATATTG
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