CX289161

Overview
NameCX289161
Unique NameCX289161
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length498
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX289161 vs. ExPASy Swiss-Prot
Match: ACTS_HUMAN (Actin, alpha skeletal muscle OS=Homo sapiens GN=ACTA1 PE=1 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 9.949e-58
Identity = 103/119 (86.55%), Postives = 113/119 (94.96%), Query Frame = 3 
Query:    3 CPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 359
            CPE LFQPS IGME+AGIHETTYNSIMKCD+DIRKDLY N V+SGG+TM+PGIADRM KEITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWI+K EYDE+GPSIVHRKCF
Sbjct:  259 CPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQEYDEAGPSIVHRKCF 377
[Close]
BLAST of CX289161 vs. ExPASy Swiss-Prot
Match: ACTS_CHICK (Actin, alpha skeletal muscle OS=Gallus gallus GN=ACTA1 PE=1 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 9.949e-58
Identity = 103/119 (86.55%), Postives = 113/119 (94.96%), Query Frame = 3 
Query:    3 CPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 359
            CPE LFQPS IGME+AGIHETTYNSIMKCD+DIRKDLY N V+SGG+TM+PGIADRM KEITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWI+K EYDE+GPSIVHRKCF
Sbjct:  259 CPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQEYDEAGPSIVHRKCF 377
[Close]
BLAST of CX289161 vs. ExPASy Swiss-Prot
Match: ACTS_BOVIN (Actin, alpha skeletal muscle OS=Bos taurus GN=ACTA1 PE=1 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 9.949e-58
Identity = 103/119 (86.55%), Postives = 113/119 (94.96%), Query Frame = 3 
Query:    3 CPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 359
            CPE LFQPS IGME+AGIHETTYNSIMKCD+DIRKDLY N V+SGG+TM+PGIADRM KEITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWI+K EYDE+GPSIVHRKCF
Sbjct:  259 CPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQEYDEAGPSIVHRKCF 377
[Close]
BLAST of CX289161 vs. ExPASy Swiss-Prot
Match: ACTS_ATRMM (Actin, alpha skeletal muscle OS=Atractaspis microlepidota microlepidota GN=ACTA1 PE=2 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 9.949e-58
Identity = 103/119 (86.55%), Postives = 113/119 (94.96%), Query Frame = 3 
Query:    3 CPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 359
            CPE LFQPS IGME+AGIHETTYNSIMKCD+DIRKDLY N V+SGG+TM+PGIADRM KEITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWI+K EYDE+GPSIVHRKCF
Sbjct:  259 CPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQEYDEAGPSIVHRKCF 377
[Close]
BLAST of CX289161 vs. ExPASy Swiss-Prot
Match: ACTSA_TAKRU (Actin, alpha skeletal muscle A OS=Takifugu rubripes GN=acta1a PE=2 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 9.949e-58
Identity = 104/119 (87.39%), Postives = 112/119 (94.12%), Query Frame = 3 
Query:    3 CPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 359
            CPE LFQPS IGME+AGIHET YNSIMKCD+DIRKDLY N VLSGG+TM+PGIADRM KEITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDE+GPSIVHRKCF
Sbjct:  259 CPETLFQPSFIGMESAGIHETAYNSIMKCDIDIRKDLYANNVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDEAGPSIVHRKCF 377
[Close]
BLAST of CX289161 vs. ExPASy Swiss-Prot
Match: ACTC_TAKRU (Actin, alpha cardiac OS=Takifugu rubripes PE=2 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 9.949e-58
Identity = 104/119 (87.39%), Postives = 112/119 (94.12%), Query Frame = 3 
Query:    3 CPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 359
            CPE LFQPS IGME+AGIHET YNSIMKCD+DIRKDLY N VLSGG+TM+PGIADRM KEITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDE+GPSIVHRKCF
Sbjct:  259 CPETLFQPSFIGMESAGIHETAYNSIMKCDIDIRKDLYANNVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDEAGPSIVHRKCF 377
[Close]
BLAST of CX289161 vs. ExPASy Swiss-Prot
Match: ACT3_ARTSX (Actin, clone 302 (Fragment) OS=Artemia sp. PE=2 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 9.949e-58
Identity = 105/119 (88.24%), Postives = 109/119 (91.60%), Query Frame = 3 
Query:    3 CPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 359
            CPE LFQPS +GME  GIHET YNSIMKCDVDIRKDLY N VLSGG+TMFPGIADRM KEIT LAPSSMKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  209 CPEALFQPSFLGMETCGIHETAYNSIMKCDVDIRKDLYANTVLSGGTTMFPGIADRMQKEITMLAPSSMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 327
[Close]
BLAST of CX289161 vs. ExPASy Swiss-Prot
Match: ACT_FUCVE (Actin OS=Fucus vesiculosus PE=2 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 1.299e-57
Identity = 104/119 (87.39%), Postives = 114/119 (95.80%), Query Frame = 3 
Query:    3 CPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 359
            CPEVLFQPS IGME++GIH+ T+ +IMKCDVDIRKDLYGNIVLSGG+TMFPGI +RM+KE+TALAPS+MKIKVVAPPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  258 CPEVLFQPSFIGMESSGIHDCTFKTIMKCDVDIRKDLYGNIVLSGGTTMFPGIGERMTKELTALAPSTMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKAEYDESGPSIVHRKCF 376
[Close]
BLAST of CX289161 vs. ExPASy Swiss-Prot
Match: ACT_FUCDI (Actin OS=Fucus distichus PE=2 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 1.299e-57
Identity = 104/119 (87.39%), Postives = 114/119 (95.80%), Query Frame = 3 
Query:    3 CPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 359
            CPEVLFQPS IGME++GIH+ T+ +IMKCDVDIRKDLYGNIVLSGG+TMFPGI +RM+KE+TALAPS+MKIKVVAPPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  257 CPEVLFQPSFIGMESSGIHDCTFKTIMKCDVDIRKDLYGNIVLSGGTTMFPGIGERMTKELTALAPSTMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKAEYDESGPSIVHRKCF 375
[Close]
BLAST of CX289161 vs. ExPASy Swiss-Prot
Match: ACT5_CHICK (Actin, cytoplasmic type 5 OS=Gallus gallus PE=3 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 1.299e-57
Identity = 103/119 (86.55%), Postives = 112/119 (94.12%), Query Frame = 3 
Query:    3 CPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 359
            CPE +FQPS +GME+ GIHETT+NSIMKCDVDIRKDLY N VLSGG+TM+PGIADRM KEITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  258 CPEAIFQPSFLGMESCGIHETTFNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
The following BLAST results are available for this feature:
BLAST of CX289161 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 475
Match NameE-valueIdentityDescription
ACTS_HUMAN9.949e-5886.55Actin, alpha skeletal muscle OS=Homo sapiens GN=AC... [more]
ACTS_CHICK9.949e-5886.55Actin, alpha skeletal muscle OS=Gallus gallus GN=A... [more]
ACTS_BOVIN9.949e-5886.55Actin, alpha skeletal muscle OS=Bos taurus GN=ACTA... [more]
ACTS_ATRMM9.949e-5886.55Actin, alpha skeletal muscle OS=Atractaspis microl... [more]
ACTSA_TAKRU9.949e-5887.39Actin, alpha skeletal muscle A OS=Takifugu rubripe... [more]
ACTC_TAKRU9.949e-5887.39Actin, alpha cardiac OS=Takifugu rubripes PE=2 SV=... [more]
ACT3_ARTSX9.949e-5888.24Actin, clone 302 (Fragment) OS=Artemia sp. PE=2 SV... [more]
ACT_FUCVE1.299e-5787.39Actin OS=Fucus vesiculosus PE=2 SV=1[more]
ACT_FUCDI1.299e-5787.39Actin OS=Fucus distichus PE=2 SV=1[more]
ACT5_CHICK1.299e-5786.55Actin, cytoplasmic type 5 OS=Gallus gallus PE=3 SV... [more]

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Properties
Property NameValue
Genbank descriptionC02009H04SK IF1 Citrus clementina cDNA clone C02009H04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289161 ID=CX289161; Name=CX289161; organism=Citrus clementina; type=EST; length=498bp
GTTGCCCAGAAGTTCTGTTCCAGCCATCTCTCATCGGAATGGAAGCTGCT
GGTATTCATGAGACTACCTACAACTCCATCATGAAGTGTGATGTGGATAT
TAGAAAGGATCTGTATGGTAACATTGTTCTCAGTGGGGGTTCAACTATGT
TCCCCGGTATTGCCGACCGTATGAGCAAGGAAATCACAGCACTTGCTCCA
AGCAGCATGAAGATCAAGGTCGTGGCTCCACCAGAGAGAAAATACAGTGT
TTGGATTGGAGGATCAATCCTTGCATCCCTCAGCACCTTCCAGCAGATGT
GGATCTCAAAGGGCGAGTATGATGAGTCTGGTCCATCCATTGTCCACAGG
AAATGCTTCTAAGTTCTTTAAGTGCTTGATGGGTGAGTTCTTTTTTTCCA
TTTAGTTGGTTTTTTGTGTCTCGTTTCGCGAACTCAAGTTGGTTGACATG
GAGAAGTGCTAAGGTTGGGGCCATTGAAGGAGGCATATCTCGATATTG
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