CX289161

Overview
NameCX289161
Unique NameCX289161
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length498
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289161 vs. ExPASy Swiss-Prot
Match: ARP2_CAEEL (Actin-related protein 2 OS=Caenorhabditis elegans GN=arx-2 PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.357e-22
Identity = 54/122 (44.26%), Postives = 75/122 (61.48%), Query Frame = 3
Query:    6 PEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITAL-----------APSSMKIKVVAPPERKYSVWIGGSILASL--STFQQMWISKGEYDESG 332
            PE+LFQP LI +E AG+ E  +  I   D+D R D Y +IVLSGG+TM+PG+  R+ KE+  L           A    KI++ APP RK+ V++GG++LA+L     Q  W+SK EY+E G
Sbjct:  262 PEILFQPHLINVEKAGLSELLFGCIQASDIDTRLDFYKHIVLSGGTTMYPGLPSRLEKELKQLYLDRVLHGNTDAFQKFKIRIEAPPSRKHMVFLGGAVLANLMKDRDQDFWVSKKEYEEGG 383          
BLAST of CX289161 vs. ExPASy Swiss-Prot
Match: ARP2_CAEBR (Actin-related protein 2 OS=Caenorhabditis briggsae GN=arx-2 PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.357e-22
Identity = 54/122 (44.26%), Postives = 75/122 (61.48%), Query Frame = 3
Query:    6 PEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITAL-----------APSSMKIKVVAPPERKYSVWIGGSILASL--STFQQMWISKGEYDESG 332
            PE+LFQP LI +E AG+ E  +  I   D+D R D Y +IVLSGG+TM+PG+  R+ KE+  L           A    KI++ APP RK+ V++GG++LA+L     Q  W+SK EY+E G
Sbjct:  260 PEILFQPHLINVEKAGLSELLFGCIQASDIDTRLDFYKHIVLSGGTTMYPGLPSRLEKELKQLYLDRVLHGNTDAFQKFKIRIEAPPSRKHMVFLGGAVLANLMKDRDQDFWVSKKEYEEGG 381          
BLAST of CX289161 vs. ExPASy Swiss-Prot
Match: ARP2_ACACA (Actin-related protein 2 OS=Acanthamoeba castellanii GN=arp2 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 3.024e-22
Identity = 51/130 (39.23%), Postives = 79/130 (60.77%), Query Frame = 3
Query:    6 PEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITAL-----------APSSMKIKVVAPPERKYSVWIGGSILASLSTFQ-QMWISKGEYDESGPSIVHRKCF 359
            PE +F P+L+  E+ G+ E  ++ I K D+D R + Y +IVLSGGSTM+PG+  R+ KEI  L           +    K ++  PP RK+ V++GG++LA +   +   W++K EY+E GP ++ RKCF
Sbjct:  260 PECMFNPALVDQESVGVGELVFDCINKADIDTRAEFYNHIVLSGGSTMYPGLPSRLEKEIKRLYFERVAKGNKVSMQKFKCRIEDPPRRKHMVFLGGAVLAEIMKDKTAFWMNKSEYEEQGPRVL-RKCF 388          
BLAST of CX289161 vs. ExPASy Swiss-Prot
Match: ARP2_DROME (Actin-related protein 2 OS=Drosophila melanogaster GN=Arp14D PE=2 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 8.797e-22
Identity = 54/127 (42.52%), Postives = 77/127 (60.63%), Query Frame = 3
Query:    6 PEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITAL-----------APSSMKIKVVAPPERKYSVWIGGSILASLSTFQQ-MWISKGEYDESGPSIVHR 350
            PE LFQP LI +E  GI E  +N+I   D+DIR +LY +IVLSGGSTM+PG+  R+ +EI  L             +  KI++  PP RK  V+IGG++LA ++  +   W+SK EY E G  ++ +
Sbjct:  262 PEALFQPHLINVEGPGIAELAFNTIQAADIDIRPELYKHIVLSGGSTMYPGLPSRLEREIKQLYLERVLKNDTEKLAKFKIRIEDPPRRKDMVFIGGAVLAEVTKDRDGFWMSKQEYQEQGLKVLQK 388          
BLAST of CX289161 vs. ExPASy Swiss-Prot
Match: ACTL9_MOUSE (Actin-like protein 9 OS=Mus musculus GN=Actl9 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 4.366e-21
Identity = 48/120 (40.00%), Postives = 71/120 (59.17%), Query Frame = 3
Query:    3 CPEVLFQPSLI-GMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 359
            CPE+LF P  I G+   G+      S++K   ++R  +  N++L GGS++F G+  R   E+         + V+A P R  SVWIGGSILASL  FQ  W+ + +Y+E GP +V+RKC+
Sbjct:  296 CPELLFHPPEIPGLSPIGLPAMAEQSLLKVPQELRPHVARNVILCGGSSLFTGLEGRFRAELLHSLSPEDHVVVMAHPNRNLSVWIGGSILASLHAFQSCWVLREQYEERGPQVVYRKCY 415          
BLAST of CX289161 vs. ExPASy Swiss-Prot
Match: ARP2_SCHPO (Actin-related protein 2 OS=Schizosaccharomyces pombe GN=arp2 PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.270e-20
Identity = 52/122 (42.62%), Postives = 75/122 (61.48%), Query Frame = 3
Query:    3 CPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITAL-----------APSSMKIKVVAPPERKYSVWIGGSILAS-LSTFQQMWISKGEYDESG 332
            CPE LFQP L+G E  G+ E  +++I   DVDIRK LY  IVLSGGS+M+ G+  R+ KEI  L              + K+K+   P R+++V+IGG++LA  ++    MW+SK E++E G
Sbjct:  257 CPECLFQPHLVGSEQPGLSEFIFDTIQAADVDIRKYLYRAIVLSGGSSMYAGLPSRLEKEIKQLWFERVLHGDPARLPNFKVKIEDAPRRRHAVFIGGAVLADIMAQNDHMWVSKAEWEEYG 378          
BLAST of CX289161 vs. ExPASy Swiss-Prot
Match: ARP2_XENTR (Actin-related protein 2 OS=Xenopus tropicalis GN=actr2 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 2.167e-20
Identity = 48/127 (37.80%), Postives = 74/127 (58.27%), Query Frame = 3
Query:    6 PEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITAL-----------APSSMKIKVVAPPERKYSVWIGGSILAS-LSTFQQMWISKGEYDESGPSIVHR 350
            PE LFQP LI +E  G+ E  +N+I   D+D R + Y +IVLSGGSTM+PG+  R+ +E+  L             S  KI++  PP RK+ V++GG++LA  +      W+++ EY E G  ++ +
Sbjct:  262 PEALFQPHLINVEGVGVAELLFNTIQAADIDTRPEFYKHIVLSGGSTMYPGLPSRLERELKQLYLERVLKGDVEKLSKFKIRIEDPPRRKHMVFLGGAVLADIMKDKDNFWMTRQEYQEKGTRVLEK 388          
BLAST of CX289161 vs. ExPASy Swiss-Prot
Match: ARP2_RAT (Actin-related protein 2 OS=Rattus norvegicus GN=Actr2 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 2.167e-20
Identity = 48/127 (37.80%), Postives = 74/127 (58.27%), Query Frame = 3
Query:    6 PEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITAL-----------APSSMKIKVVAPPERKYSVWIGGSILAS-LSTFQQMWISKGEYDESGPSIVHR 350
            PE LFQP LI +E  G+ E  +N+I   D+D R + Y +IVLSGGSTM+PG+  R+ +E+  L             S  KI++  PP RK+ V++GG++LA  +      W+++ EY E G  ++ +
Sbjct:  262 PEALFQPHLINVEGVGVAELLFNTIQAADIDTRSEFYKHIVLSGGSTMYPGLPSRLERELKQLYLERVLKGDVEKLSKFKIRIEDPPRRKHMVFLGGAVLADIMKDKDNFWMTRQEYQEKGVRVLEK 388          
BLAST of CX289161 vs. ExPASy Swiss-Prot
Match: ARP2_PONAB (Actin-related protein 2 OS=Pongo abelii GN=ACTR2 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 2.167e-20
Identity = 48/127 (37.80%), Postives = 74/127 (58.27%), Query Frame = 3
Query:    6 PEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITAL-----------APSSMKIKVVAPPERKYSVWIGGSILAS-LSTFQQMWISKGEYDESGPSIVHR 350
            PE LFQP LI +E  G+ E  +N+I   D+D R + Y +IVLSGGSTM+PG+  R+ +E+  L             S  KI++  PP RK+ V++GG++LA  +      W+++ EY E G  ++ +
Sbjct:  262 PEALFQPHLINVEGVGVAELLFNTIQAADIDTRSEFYKHIVLSGGSTMYPGLPSRLERELKQLYLERVLKGDVEKLSKFKIRIEDPPRRKHMVFLGGAVLADIMKDKDNFWMTRQEYQEKGVRVLEK 388          
BLAST of CX289161 vs. ExPASy Swiss-Prot
Match: ARP2_MOUSE (Actin-related protein 2 OS=Mus musculus GN=Actr2 PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 2.167e-20
Identity = 48/127 (37.80%), Postives = 74/127 (58.27%), Query Frame = 3
Query:    6 PEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITAL-----------APSSMKIKVVAPPERKYSVWIGGSILAS-LSTFQQMWISKGEYDESGPSIVHR 350
            PE LFQP LI +E  G+ E  +N+I   D+D R + Y +IVLSGGSTM+PG+  R+ +E+  L             S  KI++  PP RK+ V++GG++LA  +      W+++ EY E G  ++ +
Sbjct:  262 PEALFQPHLINVEGVGVAELLFNTIQAADIDTRSEFYKHIVLSGGSTMYPGLPSRLERELKQLYLERVLKGDVEKLSKFKIRIEDPPRRKHMVFLGGAVLADIMKDKDNFWMTRQEYQEKGVRVLEK 388          
The following BLAST results are available for this feature:
BLAST of CX289161 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 475
Match NameE-valueIdentityDescription
ARP2_CAEEL1.357e-2244.26Actin-related protein 2 OS=Caenorhabditis elegans ... [more]
ARP2_CAEBR1.357e-2244.26Actin-related protein 2 OS=Caenorhabditis briggsae... [more]
ARP2_ACACA3.024e-2239.23Actin-related protein 2 OS=Acanthamoeba castellani... [more]
ARP2_DROME8.797e-2242.52Actin-related protein 2 OS=Drosophila melanogaster... [more]
ACTL9_MOUSE4.366e-2140.00Actin-like protein 9 OS=Mus musculus GN=Actl9 PE=2... [more]
ARP2_SCHPO1.270e-2042.62Actin-related protein 2 OS=Schizosaccharomyces pom... [more]
ARP2_XENTR2.167e-2037.80Actin-related protein 2 OS=Xenopus tropicalis GN=a... [more]
ARP2_RAT2.167e-2037.80Actin-related protein 2 OS=Rattus norvegicus GN=Ac... [more]
ARP2_PONAB2.167e-2037.80Actin-related protein 2 OS=Pongo abelii GN=ACTR2 P... [more]
ARP2_MOUSE2.167e-2037.80Actin-related protein 2 OS=Mus musculus GN=Actr2 P... [more]

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Properties
Property NameValue
Genbank descriptionC02009H04SK IF1 Citrus clementina cDNA clone C02009H04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289161 ID=CX289161; Name=CX289161; organism=Citrus clementina; type=EST; length=498bp
GTTGCCCAGAAGTTCTGTTCCAGCCATCTCTCATCGGAATGGAAGCTGCT
GGTATTCATGAGACTACCTACAACTCCATCATGAAGTGTGATGTGGATAT
TAGAAAGGATCTGTATGGTAACATTGTTCTCAGTGGGGGTTCAACTATGT
TCCCCGGTATTGCCGACCGTATGAGCAAGGAAATCACAGCACTTGCTCCA
AGCAGCATGAAGATCAAGGTCGTGGCTCCACCAGAGAGAAAATACAGTGT
TTGGATTGGAGGATCAATCCTTGCATCCCTCAGCACCTTCCAGCAGATGT
GGATCTCAAAGGGCGAGTATGATGAGTCTGGTCCATCCATTGTCCACAGG
AAATGCTTCTAAGTTCTTTAAGTGCTTGATGGGTGAGTTCTTTTTTTCCA
TTTAGTTGGTTTTTTGTGTCTCGTTTCGCGAACTCAAGTTGGTTGACATG
GAGAAGTGCTAAGGTTGGGGCCATTGAAGGAGGCATATCTCGATATTG
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