CX289161

Overview
NameCX289161
Unique NameCX289161
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length498
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289161 vs. ExPASy Swiss-Prot
Match: ARP5_CHICK (Actin-related protein 5 OS=Gallus gallus GN=ACTR5 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.136e-11
Identity = 36/118 (30.51%), Postives = 59/118 (50.00%), Query Frame = 3
Query:    6 PEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILA-SLSTFQQMWISKGEYDESGPSIVHRKC 356
            PE++FQPSLIG +  GI ET    + +   + +  L  N+ L+GG+ M+PG+  R+ KE+  + P     +V          W G    A    T ++ WI++ +Y+E G   +   C
Sbjct:  456 PEIIFQPSLIGEDQTGIAETMQYVLERYSKEQQALLVQNVFLTGGNAMYPGLKARVQKELLEMRPFQSSFQVHLASSPTLDAWYGARDWAVEHMTREEGWITRKDYEEKGGEYLKEHC 573          
BLAST of CX289161 vs. ExPASy Swiss-Prot
Match: ARP3_ARATH (Actin-related protein 3 OS=Arabidopsis thaliana GN=ARP3 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.136e-11
Identity = 40/129 (31.01%), Postives = 63/129 (48.84%), Query Frame = 3
Query:    6 PEVLFQPSLIGME-AAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSM----------------KIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSI 341
            PEV F P +   +    +       I    +D R+ LY NIVLSGGSTMF     R+ +++  +  + +                ++ VV+ P ++++VW GGS+L+S   F     +K EY+E G SI
Sbjct:  288 PEVFFNPEIYSNDFTTTLPAVIDKCIQSAPIDTRRALYKNIVLSGGSTMFKDFGRRLQRDLKKIVDARVLANNARTGGEITSQPVEVNVVSHPVQRFAVWFGGSVLSSTPEFFASCRTKEEYEEYGASI 416          
BLAST of CX289161 vs. ExPASy Swiss-Prot
Match: ARP5_AEDAE (Actin-related protein 5 OS=Aedes aegypti GN=Arp5 PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 6.987e-11
Identity = 35/109 (32.11%), Postives = 57/109 (52.29%), Query Frame = 3
Query:    6 PEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESG 332
            PE+LFQPS+IG++ AG+  T    +     + +  L GN++L+GG     G  +R+S+E+ A+ P      ++         W G S  A+   F+Q  I++  YDE G
Sbjct:  518 PEILFQPSMIGVQEAGLTGTIDYVLKLFPKEDQVKLVGNVMLTGGCANIRGFKERLSRELQAILPFQSVYNLMVAGSPSLDAWRGASQFANSQEFKQSLITRQLYDECG 626          
BLAST of CX289161 vs. ExPASy Swiss-Prot
Match: ACT_DICVI (Actin (Fragment) OS=Dictyocaulus viviparus PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 6.987e-11
Identity = 31/32 (96.88%), Postives = 31/32 (96.88%), Query Frame = 3
Query:  264 SILASLSTFQQMWISKGEYDESGPSIVHRKCF 359
            SILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:    2 SILASLSTFQQMWISKQEYDESGPSIVHRKCF 33          
BLAST of CX289161 vs. ExPASy Swiss-Prot
Match: ARP6_CAEEL (Actin-like protein C08B11.6 OS=Caenorhabditis elegans GN=C08B11.6 PE=2 SV=3)

HSP 1 Score: 66.2402 bits (160), Expect = 9.125e-11
Identity = 38/115 (33.04%), Postives = 63/115 (54.78%), Query Frame = 3
Query:    6 PEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKV---VAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSI 341
            PE+LF PS I ++  G+ E    SI +C   +R  L  NI++ GGS+ FPG  +R+ +E+ ++ P+   + V   V  P+     W  G  L  L+  +  WI++ ++DE G S+
Sbjct:  273 PEILFNPSDIDIDQCGVAEAVIESICQCPEALRPALAENIIVIGGSSCFPGFRERLEREVRSMLPAEYGLNVSNDVINPQT--HSWHCGQEL--LTASKVPWINRKDWDERGDSL 383          
The following BLAST results are available for this feature:
BLAST of CX289161 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 475
Match NameE-valueIdentityDescription
ARP5_CHICK3.136e-1130.51Actin-related protein 5 OS=Gallus gallus GN=ACTR5 ... [more]
ARP3_ARATH3.136e-1131.01Actin-related protein 3 OS=Arabidopsis thaliana GN... [more]
ARP5_AEDAE6.987e-1132.11Actin-related protein 5 OS=Aedes aegypti GN=Arp5 P... [more]
ACT_DICVI6.987e-1196.88Actin (Fragment) OS=Dictyocaulus viviparus PE=3 SV... [more]
ARP6_CAEEL9.125e-1133.04Actin-like protein C08B11.6 OS=Caenorhabditis eleg... [more]

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Properties
Property NameValue
Genbank descriptionC02009H04SK IF1 Citrus clementina cDNA clone C02009H04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289161 ID=CX289161; Name=CX289161; organism=Citrus clementina; type=EST; length=498bp
GTTGCCCAGAAGTTCTGTTCCAGCCATCTCTCATCGGAATGGAAGCTGCT
GGTATTCATGAGACTACCTACAACTCCATCATGAAGTGTGATGTGGATAT
TAGAAAGGATCTGTATGGTAACATTGTTCTCAGTGGGGGTTCAACTATGT
TCCCCGGTATTGCCGACCGTATGAGCAAGGAAATCACAGCACTTGCTCCA
AGCAGCATGAAGATCAAGGTCGTGGCTCCACCAGAGAGAAAATACAGTGT
TTGGATTGGAGGATCAATCCTTGCATCCCTCAGCACCTTCCAGCAGATGT
GGATCTCAAAGGGCGAGTATGATGAGTCTGGTCCATCCATTGTCCACAGG
AAATGCTTCTAAGTTCTTTAAGTGCTTGATGGGTGAGTTCTTTTTTTCCA
TTTAGTTGGTTTTTTGTGTCTCGTTTCGCGAACTCAAGTTGGTTGACATG
GAGAAGTGCTAAGGTTGGGGCCATTGAAGGAGGCATATCTCGATATTG
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