CX289162

Overview
NameCX289162
Unique NameCX289162
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length579
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289162 vs. ExPASy Swiss-Prot
Match: CLPX_RHOS1 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9) GN=clpX PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 7.456e-35
Identity = 79/168 (47.02%), Postives = 112/168 (66.67%), Query Frame = 2
Query:    2 FVGLEKTISERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQVLTEPKNALGRQYKKMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILTEAMFEIPETKIGTSSVNAVLVDKEAVGSVDAP 505
            F GLEK I++R + S IGFGA V+         DA     L + ++  DL+ +GLIPEF+GR P++ +L+ L+E  LV +LTEPKNAL +QY+++F +  VKL FT DAL  IAK+A+ + TGARGLR+++E+IL + MFE+P    G   V  V+V++EAV S   P
Sbjct:  249 FAGLEKIIAQRGKGSGIGFGAEVKD-------PDARGVGELFKELEPEDLLKFGLIPEFVGRLPVIATLTDLDEAALVTILTEPKNALVKQYQRLFEIEGVKLTFTADALTAIAKRAIKRKTGARGLRSIMEDILLDTMFELP----GLEGVEEVVVNEEAVNSGAKP 405          
BLAST of CX289162 vs. ExPASy Swiss-Prot
Match: CLPX_AGRT5 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=clpX PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 7.456e-35
Identity = 77/168 (45.83%), Postives = 111/168 (66.07%), Query Frame = 2
Query:    2 FVGLEKTISERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQVLTEPKNALGRQYKKMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILTEAMFEIPETKIGTSSVNAVLVDKEAVGSVDAP 505
            F GL+K IS R + +SIGFGA V+A        D      +L  ++  DLV +GLIPEFIGR P+L +L  L+ED L+Q+L+EPKNAL +QY+++F M +V+L F +DALR IA++A+ + TGARGLR+++E IL + MFE+P  +     V  V++  + V  V  P
Sbjct:  253 FAGLDKIISARGEKTSIGFGATVKAE-------DDRRVGEVLRELEPEDLVKFGLIPEFIGRLPVLATLEDLDEDALIQILSEPKNALVKQYQRLFEMEDVELTFHEDALREIARRAITRKTGARGLRSIMEKILLDTMFELPTLE----GVREVVISNDVVSGVARP 409          
BLAST of CX289162 vs. ExPASy Swiss-Prot
Match: CLPX_RHIME (ATP-dependent Clp protease ATP-binding subunit clpX OS=Rhizobium meliloti GN=clpX PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 9.738e-35
Identity = 79/170 (46.47%), Postives = 113/170 (66.47%), Query Frame = 2
Query:    2 FVGLEKTISERRQDSSIGFGAPVRA--NMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQVLTEPKNALGRQYKKMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILTEAMFEIPETKIGTSSVNAVLVDKEAVGSVDAP 505
            F GL+K IS R + +SIGFGA VRA  + R G          +L  ++  DLV +GLIPEFIGR P+L +L  L+ED L+Q+L+EPKNAL +QY+++F M +V+L+F +DALR IA++A+ + TGARGLR+++E IL + MFE+P  +     V  V++  E V     P
Sbjct:  253 FAGLDKIISARGEKTSIGFGATVRAPEDRRVG---------EVLRELEPEDLVKFGLIPEFIGRLPVLATLEDLDEDALIQILSEPKNALVKQYQRLFEMEDVELNFHEDALREIARRAIVRKTGARGLRSIMEKILLDTMFELPTLE----GVREVVISDEVVKGTARP 409          
BLAST of CX289162 vs. ExPASy Swiss-Prot
Match: CLPX_RHILW (ATP-dependent Clp protease ATP-binding subunit clpX OS=Rhizobium leguminosarum bv. trifolii (strain WSM2304) GN=clpX PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.272e-34
Identity = 77/162 (47.53%), Postives = 110/162 (67.90%), Query Frame = 2
Query:    2 FVGLEKTISERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQVLTEPKNALGRQYKKMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILTEAMFEIPETKIGTSSVNAVLVDKEAV 487
            F GL+K IS R + +SIGFGA V+A        D      +L  ++  DLV +GLIPEFIGR P+L +L  L+ED L+Q+L+EPKNAL +QY+++F M +V+L F +DALR IA+KA+ + TGARGLR+++E IL + MFE+P  +     V  V++ +E V
Sbjct:  253 FAGLDKIISARGEKTSIGFGATVKAQ-------DDRRVGEVLRELEPEDLVKFGLIPEFIGRLPVLATLEDLDEDALIQILSEPKNALIKQYQRLFEMEDVELTFHEDALREIARKAIVRKTGARGLRSIMEKILLDTMFELPTLE----GVREVVISEEVV 403          
BLAST of CX289162 vs. ExPASy Swiss-Prot
Match: CLPX_RHIL3 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=clpX PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.272e-34
Identity = 76/162 (46.91%), Postives = 111/162 (68.52%), Query Frame = 2
Query:    2 FVGLEKTISERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQVLTEPKNALGRQYKKMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILTEAMFEIPETKIGTSSVNAVLVDKEAV 487
            F GL+K IS R + +SIGFGA V++        D      +L  ++  DLV +GLIPEFIGR P+L +L  L+ED L+Q+L+EPKNAL +QY+++F M +V+L+F +DALR IA+KA+ + TGARGLR+++E IL + MFE+P  +     V  V++ +E V
Sbjct:  253 FAGLDKIISARGEKTSIGFGASVKSQ-------DDRRVGEVLRELEPEDLVKFGLIPEFIGRLPVLATLEDLDEDALIQILSEPKNALIKQYQRLFEMEDVELNFHEDALREIARKAIVRKTGARGLRSIMEKILLDTMFELPTLE----GVREVVISEEVV 403          
BLAST of CX289162 vs. ExPASy Swiss-Prot
Match: CLPX_RHIEC (ATP-dependent Clp protease ATP-binding subunit clpX OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=clpX PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.272e-34
Identity = 77/162 (47.53%), Postives = 110/162 (67.90%), Query Frame = 2
Query:    2 FVGLEKTISERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQVLTEPKNALGRQYKKMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILTEAMFEIPETKIGTSSVNAVLVDKEAV 487
            F GL+K IS R + +SIGFGA V+A        D      +L  ++  DLV +GLIPEFIGR P+L +L  L+ED L+Q+L+EPKNAL +QY+++F M +V+L F +DALR IA+KA+ + TGARGLR+++E IL + MFE+P  +     V  V++ +E V
Sbjct:  253 FAGLDKIISARGEKTSIGFGATVKAQ-------DDRRVGEVLRELEPEDLVKFGLIPEFIGRLPVLATLEDLDEDALIQILSEPKNALIKQYQRLFEMEDVELTFHEDALREIARKAIVRKTGARGLRSIMEKILLDTMFELPTLE----GVREVVISEEVV 403          
BLAST of CX289162 vs. ExPASy Swiss-Prot
Match: CLPX_RHIE6 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Rhizobium etli (strain CIAT 652) GN=clpX PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.272e-34
Identity = 77/162 (47.53%), Postives = 110/162 (67.90%), Query Frame = 2
Query:    2 FVGLEKTISERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQVLTEPKNALGRQYKKMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILTEAMFEIPETKIGTSSVNAVLVDKEAV 487
            F GL+K IS R + +SIGFGA V+A        D      +L  ++  DLV +GLIPEFIGR P+L +L  L+ED L+Q+L+EPKNAL +QY+++F M +V+L F +DALR IA+KA+ + TGARGLR+++E IL + MFE+P  +     V  V++ +E V
Sbjct:  253 FAGLDKIISARGEKTSIGFGATVKAQ-------DDRRVGEVLRELEPEDLVKFGLIPEFIGRLPVLATLEDLDEDALIQILSEPKNALIKQYQRLFEMEDVELTFHEDALREIARKAIVRKTGARGLRSIMEKILLDTMFELPTLE----GVREVVISEEVV 403          
BLAST of CX289162 vs. ExPASy Swiss-Prot
Match: CLPX_PARDP (ATP-dependent Clp protease ATP-binding subunit clpX OS=Paracoccus denitrificans (strain Pd 1222) GN=clpX PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.272e-34
Identity = 75/182 (41.21%), Postives = 121/182 (66.48%), Query Frame = 2
Query:    2 FVGLEKTISERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQVLTEPKNALGRQYKKMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILTEAMFEIPETKIGTSSVNAVLVDKEAVGSVDAPGCGAKILHGDGELE 547
            F GL++ I++R + +++GFGA V+ +   G          L + ++  DL+ +GLIPEF+GR P++ +L  L+E  L+ +LT+PKNAL +QY+++F + +VKL FT+DAL  IAK+A+ + TGARGLR+++E+IL + MF++P    G  SV  V+V++EA   VD P     ++H D + E
Sbjct:  249 FAGLDRIIAQRNKGTAMGFGAAVKEDDDKG-------VGELFKQLEPEDLLKFGLIPEFVGRLPVIATLGDLDEQALITILTQPKNALVKQYQRLFDLESVKLTFTEDALTAIAKRAIKRKTGARGLRSIMEDILLDTMFDLP----GMDSVEEVVVNEEA---VDNPTAKPLLIHTDSKKE 416          
BLAST of CX289162 vs. ExPASy Swiss-Prot
Match: CLPX_ZYMMO (ATP-dependent Clp protease ATP-binding subunit clpX OS=Zymomonas mobilis GN=clpX PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 1.661e-34
Identity = 75/168 (44.64%), Postives = 109/168 (64.88%), Query Frame = 2
Query:    2 FVGLEKTISERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQVLTEPKNALGRQYKKMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILTEAMFEIPETKIGTSSVNAVLVDKEAVGSVDAP 505
            F GL++ I++R +  SIGFGA V A        D   T  +L+  +  DL+ +GLIPEF+GR P+L +L  L++  LV++LTEPKNAL +QY+K+F + + KL FT+DAL  IAKK + + TGARGLR++LE IL + MFE+P  +     V+ ++VDK+       P
Sbjct:  250 FAGLDRIIADRLEGKSIGFGAHVAA-------PDERRTGEILQECEPEDLLKFGLIPEFVGRLPVLATLEDLDQSALVRILTEPKNALVKQYQKLFELEDAKLEFTEDALAAIAKKGIERKTGARGLRSILEGILLDTMFELPSLE----GVSEIIVDKDVAEGKKEP 406          
BLAST of CX289162 vs. ExPASy Swiss-Prot
Match: CLPX_THISH (ATP-dependent Clp protease ATP-binding subunit clpX OS=Thioalkalivibrio sp. (strain HL-EbGR7) GN=clpX PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 1.661e-34
Identity = 72/162 (44.44%), Postives = 105/162 (64.81%), Query Frame = 2
Query:    2 FVGLEKTISERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQVLTEPKNALGRQYKKMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILTEAMFEIPETKIGTSSVNAVLVDKEAV 487
            F GL+K I +R +   IGF A V++    G +      S  L  V+  DL+ YGLIPEF+GR P++ +L  L+ED L+Q+LTEPKNAL +QY K+F M  V + F +DALR +A KAM + TGARGLR +LE +L + M+++P T+    +V+ V++D   +
Sbjct:  252 FAGLDKVIRDRTEKGGIGFSAKVKSKEEKGPV------SRTLSGVEPEDLIKYGLIPEFVGRLPVVATLEELDEDALIQILTEPKNALTKQYGKLFEMEGVDIEFREDALRAVAAKAMERKTGARGLRTILEQVLLDTMYDLPSTE----NVSKVVIDDAVI 403          
The following BLAST results are available for this feature:
BLAST of CX289162 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPX_RHOS17.456e-3547.02ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_AGRT57.456e-3545.83ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_RHIME9.738e-3546.47ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_RHILW1.272e-3447.53ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_RHIL31.272e-3446.91ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_RHIEC1.272e-3447.53ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_RHIE61.272e-3447.53ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_PARDP1.272e-3441.21ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_ZYMMO1.661e-3444.64ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_THISH1.661e-3444.44ATP-dependent Clp protease ATP-binding subunit clp... [more]

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Properties
Property NameValue
Genbank descriptionC02009H05SK IF1 Citrus clementina cDNA clone C02009H05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289162 ID=CX289162; Name=CX289162; organism=Citrus clementina; type=EST; length=579bp
CTTTGTTGGTTTGGAGAAGACAATTTCAGAGAGACGGCAAGATTCTTCTA
TTGGCTTTGGAGCACCAGTCCGTGCAAACATGAGAACTGGTGGATTGACT
GATGCGCTTGTGACGTCATCATTGTTGGAATCAGTAGATAGTGGTGATCT
TGTAGCATATGGCCTCATTCCTGAATTCATTGGACGGTTTCCGATTTTAG
TGAGCTTGTCAGCTTTAAATGAGGATCAACTTGTTCAGGTTCTCACGGAG
CCCAAAAATGCTCTTGGTAGACAGTACAAGAAGATGTTCAGCATGAATAA
TGTCAAACTGCATTTTACTGATGATGCATTGCGATTGATTGCAAAGAAAG
CAATGGCAAAAAACACTGGTGCTCGGGGTCTAAGAGCCTTATTAGAAAAT
ATTCTAACAGAGGCAATGTTTGAGATTCCGGAAACCAAGATTGGAACTTC
AAGTGTAAATGCAGTATTGGTCGACAAGGAGGCCGTTGGATCAGTGGATG
CACCTGGATGTGGTGCAAAAATTCTTCATGGAGATGGTGAATTGGAACGA
GTTCTCCATGAAACAAAGTCAAAGGATTT
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