CX289162

Overview
NameCX289162
Unique NameCX289162
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length579
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289162 vs. ExPASy Swiss-Prot
Match: CLPX_SHESA (ATP-dependent Clp protease ATP-binding subunit clpX OS=Shewanella sp. (strain ANA-3) GN=clpX PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 2.169e-34
Identity = 80/169 (47.34%), Postives = 107/169 (63.31%), Query Frame = 2
Query:    2 FVGLEKTISERRQ-DSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQVLTEPKNALGRQYKKMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILTEAMFEIPETKIGTSSVNAVLVDKEAVGSVDAP 505
            F GLEK I +R    S IGFGA V+      G  D    S  L  V+  DLV YGLIPEFIGR P++ +L+ L+E+ LVQ+L+EPKNAL +QY  +F M  V+L F +DAL+ IA KAM++ TGARGLR+++E IL + M++IP  +     V   +VD+  V    AP
Sbjct:  252 FAGLEKVIEQRAHVGSGIGFGAQVK------GEKDKATISQTLSQVEPEDLVKYGLIPEFIGRLPVVATLTELDEEALVQILSEPKNALTKQYNALFEMEGVELEFREDALKAIAHKAMSRKTGARGLRSIVEGILLDTMYDIPSIE----GVVKAVVDESVVNGESAP 410          
BLAST of CX289162 vs. ExPASy Swiss-Prot
Match: CLPX_SPHWW (ATP-dependent Clp protease ATP-binding subunit clpX OS=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) GN=clpX PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 2.833e-34
Identity = 77/162 (47.53%), Postives = 106/162 (65.43%), Query Frame = 2
Query:    2 FVGLEKTISERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQVLTEPKNALGRQYKKMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILTEAMFEIPETKIGTSSVNAVLVDKEAV 487
            F GLEK I +R Q  SIGFGA V A        +   T   L+  +  DL+ +GLIPEF+GR P++ +L  L+E  LV++LT PKNAL +QY+K+F M  VKL FTDDAL  IA+KA+ + TGARGLR++LE +L + MF++P        V+ ++VDK+ V
Sbjct:  251 FAGLEKIIGDRLQGKSIGFGAYVAA-------PEERRTGETLQQCEPEDLLKFGLIPEFVGRLPVIATLMDLDEAALVEILTAPKNALVKQYQKLFDMEGVKLGFTDDALVAIARKAITRKTGARGLRSILEGLLLDTMFDLP----SMDGVDEIMVDKDVV 401          
BLAST of CX289162 vs. ExPASy Swiss-Prot
Match: CLPX_SHEB9 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Shewanella baltica (strain OS195) GN=clpX PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 2.833e-34
Identity = 79/169 (46.75%), Postives = 108/169 (63.91%), Query Frame = 2
Query:    2 FVGLEKTISERRQ-DSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQVLTEPKNALGRQYKKMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILTEAMFEIPETKIGTSSVNAVLVDKEAVGSVDAP 505
            F GLEK I +R    S IGFGA V+      G  +    S  L  V+ GDLV YGLIPEFIGR P++ +L+ L+E+ LVQ+L++PKNAL +QY  +F M  V+L F +DAL+ IA KAM++ TGARGLR+++E+IL + M++IP        V   +VD+  V    AP
Sbjct:  252 FAGLEKVIEQRAHVGSGIGFGAQVK------GEKEKATISETLTQVEPGDLVKYGLIPEFIGRLPVVATLTELDEEALVQILSQPKNALTKQYSALFEMEGVELEFREDALKAIAHKAMSRKTGARGLRSIVESILLDTMYDIP----SVDGVVKAVVDESVVKGESAP 410          
BLAST of CX289162 vs. ExPASy Swiss-Prot
Match: CLPX_SHEB8 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Shewanella baltica (strain OS185) GN=clpX PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 2.833e-34
Identity = 79/169 (46.75%), Postives = 108/169 (63.91%), Query Frame = 2
Query:    2 FVGLEKTISERRQ-DSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQVLTEPKNALGRQYKKMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILTEAMFEIPETKIGTSSVNAVLVDKEAVGSVDAP 505
            F GLEK I +R    S IGFGA V+      G  +    S  L  V+ GDLV YGLIPEFIGR P++ +L+ L+E+ LVQ+L++PKNAL +QY  +F M  V+L F +DAL+ IA KAM++ TGARGLR+++E+IL + M++IP        V   +VD+  V    AP
Sbjct:  252 FAGLEKVIEQRAHVGSGIGFGAQVK------GEKEKATISETLTQVEPGDLVKYGLIPEFIGRLPVVATLTELDEEALVQILSQPKNALTKQYSALFEMEGVELEFREDALKAIAHKAMSRKTGARGLRSIVESILLDTMYDIP----SVDGVVKAVVDESVVKGESAP 410          
BLAST of CX289162 vs. ExPASy Swiss-Prot
Match: CLPX_SHEB5 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=clpX PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 2.833e-34
Identity = 79/169 (46.75%), Postives = 108/169 (63.91%), Query Frame = 2
Query:    2 FVGLEKTISERRQ-DSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQVLTEPKNALGRQYKKMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILTEAMFEIPETKIGTSSVNAVLVDKEAVGSVDAP 505
            F GLEK I +R    S IGFGA V+      G  +    S  L  V+ GDLV YGLIPEFIGR P++ +L+ L+E+ LVQ+L++PKNAL +QY  +F M  V+L F +DAL+ IA KAM++ TGARGLR+++E+IL + M++IP        V   +VD+  V    AP
Sbjct:  252 FAGLEKVIEQRAHVGSGIGFGAQVK------GEKEKATISETLTQVEPGDLVKYGLIPEFIGRLPVVATLTELDEEALVQILSQPKNALTKQYSALFEMEGVELEFREDALKAIAHKAMSRKTGARGLRSIVESILLDTMYDIP----SVDGVVKAVVDESVVKGESAP 410          
BLAST of CX289162 vs. ExPASy Swiss-Prot
Match: CLPX_SHEB2 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Shewanella baltica (strain OS223) GN=clpX PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 2.833e-34
Identity = 79/169 (46.75%), Postives = 108/169 (63.91%), Query Frame = 2
Query:    2 FVGLEKTISERRQ-DSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQVLTEPKNALGRQYKKMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILTEAMFEIPETKIGTSSVNAVLVDKEAVGSVDAP 505
            F GLEK I +R    S IGFGA V+      G  +    S  L  V+ GDLV YGLIPEFIGR P++ +L+ L+E+ LVQ+L++PKNAL +QY  +F M  V+L F +DAL+ IA KAM++ TGARGLR+++E+IL + M++IP        V   +VD+  V    AP
Sbjct:  252 FAGLEKVIEQRAHVGSGIGFGAQVK------GEKEKATISETLTQVEPGDLVKYGLIPEFIGRLPVVATLTELDEEALVQILSQPKNALTKQYSALFEMEGVELEFREDALKAIAHKAMSRKTGARGLRSIVESILLDTMYDIP----SVDGVVKAVVDESVVKGESAP 410          
BLAST of CX289162 vs. ExPASy Swiss-Prot
Match: CLPX_RHOS5 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) GN=clpX PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 2.833e-34
Identity = 78/168 (46.43%), Postives = 111/168 (66.07%), Query Frame = 2
Query:    2 FVGLEKTISERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQVLTEPKNALGRQYKKMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILTEAMFEIPETKIGTSSVNAVLVDKEAVGSVDAP 505
            F GLEK I++R + S IGFGA V+         D+     L   ++  DL+ +GLIPEF+GR P++ +L+ L+E  LV +LTEPKNAL +QY+++F +  VKL FT DAL  IAK+A+ + TGARGLR+++E+IL + MFE+P    G   V  V+V++EAV S   P
Sbjct:  249 FAGLEKIIAQRGKGSGIGFGAEVKD-------PDSRGVGELFTELEPEDLLKFGLIPEFVGRLPVIATLTDLDEAALVTILTEPKNALVKQYQRLFEIEGVKLTFTADALTAIAKRAIKRKTGARGLRSIMEDILLDTMFELP----GLEGVEEVVVNEEAVNSGAKP 405          
BLAST of CX289162 vs. ExPASy Swiss-Prot
Match: CLPX_METSB (ATP-dependent Clp protease ATP-binding subunit clpX OS=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) GN=clpX PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 2.833e-34
Identity = 75/168 (44.64%), Postives = 109/168 (64.88%), Query Frame = 2
Query:    2 FVGLEKTISERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQVLTEPKNALGRQYKKMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILTEAMFEIPETKIGTSSVNAVLVDKEAVGSVDAP 505
            F GLEK IS R + +SIGFGA V+A        D   T  +   V+  DL+ +GLIPEF+GR P++ +L  L+E+ L ++LTEPKNAL +QY+++F M N +L F D+AL ++AKKA+ + TGARGLR+++E IL + MF++P    G  SV  V++  + V     P
Sbjct:  250 FAGLEKIISTRGKGTSIGFGATVQA-------PDDRRTGEIFRKVEPEDLLKFGLIPEFVGRLPVIATLEDLDEEALKKILTEPKNALVKQYQRLFEMENTELSFQDEALNVVAKKAIERRTGARGLRSIMEGILLDTMFDLP----GLDSVEQVVIGPDVVEGKSRP 406          
BLAST of CX289162 vs. ExPASy Swiss-Prot
Match: CLPX_HALHL (ATP-dependent Clp protease ATP-binding subunit clpX OS=Halorhodospira halophila (strain DSM 244 / SL1) GN=clpX PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 2.833e-34
Identity = 73/168 (43.45%), Postives = 107/168 (63.69%), Query Frame = 2
Query:    2 FVGLEKTISERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQVLTEPKNALGRQYKKMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILTEAMFEIPETKIGTSSVNAVLVDKEAVGSVDAP 505
            F GL+K I ER +   IGF A ++      G  +       L++V+  DLV YGLIPEF+GR P++ +L+ L+++ LVQ+L EPKNAL +QY+K+F M  V+L   DDALR +A KAM + TGARGLR ++E +L E M+E+P  +    +V+ V+VD+  +     P
Sbjct:  253 FAGLDKVIQERSERGGIGFSAEIK------GEGERASVGETLQTVEPSDLVRYGLIPEFVGRLPVIATLNELDQEALVQILREPKNALVKQYQKLFEMEGVELDLRDDALRAVADKAMERKTGARGLRTIIEQVLLETMYELPSME----NVSKVVVDESVIAGDSDP 410          
BLAST of CX289162 vs. ExPASy Swiss-Prot
Match: CLPX_AGRVS (ATP-dependent Clp protease ATP-binding subunit clpX OS=Agrobacterium vitis (strain S4 / ATCC BAA-846) GN=clpX PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 2.833e-34
Identity = 79/170 (46.47%), Postives = 112/170 (65.88%), Query Frame = 2
Query:    2 FVGLEKTISERRQDSSIGFGAPVRA--NMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQVLTEPKNALGRQYKKMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILTEAMFEIPETKIGTSSVNAVLVDKEAVGSVDAP 505
            F GL+K IS R + +SIGFGA V +  + R G          +L  ++  DLV +GLIPEFIGR P+L +L  L+ED L+Q+L+EPKNAL +QY+++F M +V+L F +DALR IA+KA+ + TGARGLR+++E IL + MFE+PE +     V  V++  E V     P
Sbjct:  253 FAGLDKIISARGEKTSIGFGATVVSPEDRRVG---------EVLRELEPEDLVKFGLIPEFIGRLPVLATLEDLDEDALIQILSEPKNALVKQYQRLFEMEDVELSFHEDALREIARKAITRKTGARGLRSIMEKILLDTMFELPELE----GVREVVISDEVVRGAARP 409          
The following BLAST results are available for this feature:
BLAST of CX289162 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPX_SHESA2.169e-3447.34ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_SPHWW2.833e-3447.53ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_SHEB92.833e-3446.75ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_SHEB82.833e-3446.75ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_SHEB52.833e-3446.75ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_SHEB22.833e-3446.75ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_RHOS52.833e-3446.43ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_METSB2.833e-3444.64ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_HALHL2.833e-3443.45ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_AGRVS2.833e-3446.47ATP-dependent Clp protease ATP-binding subunit clp... [more]

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Properties
Property NameValue
Genbank descriptionC02009H05SK IF1 Citrus clementina cDNA clone C02009H05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289162 ID=CX289162; Name=CX289162; organism=Citrus clementina; type=EST; length=579bp
CTTTGTTGGTTTGGAGAAGACAATTTCAGAGAGACGGCAAGATTCTTCTA
TTGGCTTTGGAGCACCAGTCCGTGCAAACATGAGAACTGGTGGATTGACT
GATGCGCTTGTGACGTCATCATTGTTGGAATCAGTAGATAGTGGTGATCT
TGTAGCATATGGCCTCATTCCTGAATTCATTGGACGGTTTCCGATTTTAG
TGAGCTTGTCAGCTTTAAATGAGGATCAACTTGTTCAGGTTCTCACGGAG
CCCAAAAATGCTCTTGGTAGACAGTACAAGAAGATGTTCAGCATGAATAA
TGTCAAACTGCATTTTACTGATGATGCATTGCGATTGATTGCAAAGAAAG
CAATGGCAAAAAACACTGGTGCTCGGGGTCTAAGAGCCTTATTAGAAAAT
ATTCTAACAGAGGCAATGTTTGAGATTCCGGAAACCAAGATTGGAACTTC
AAGTGTAAATGCAGTATTGGTCGACAAGGAGGCCGTTGGATCAGTGGATG
CACCTGGATGTGGTGCAAAAATTCTTCATGGAGATGGTGAATTGGAACGA
GTTCTCCATGAAACAAAGTCAAAGGATTT
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