CX289163

Overview
NameCX289163
Unique NameCX289163
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length491
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289163 vs. ExPASy Swiss-Prot
Match: NLTP_GERHY (Non-specific lipid-transfer protein OS=Gerbera hybrida PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 1.106e-29
Identity = 57/93 (61.29%), Postives = 69/93 (74.19%), Query Frame = 3
Query:   27 AQAITCGQVSGSLAPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKV 305
            A AI+CGQV+  L PC G+L +GGP+P  CCNGVR LN AA+TTPDRQTAC CLK    +   +NLNNA  LPG CG+SI YKI+ + DCSK+
Sbjct:   23 ADAISCGQVTSGLVPCFGYLAAGGPVPPACCNGVRGLNNAAKTTPDRQTACGCLKGILAANTRINLNNANSLPGKCGISIGYKITPNIDCSKI 115          
BLAST of CX289163 vs. ExPASy Swiss-Prot
Match: NLTPA_BRAOT (Non-specific lipid-transfer protein A OS=Brassica oleracea var. italica GN=WAX9A PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 1.106e-29
Identity = 58/104 (55.77%), Postives = 81/104 (77.88%), Query Frame = 3
Query:    3 MLVTGPLSA-QAITCGQVSGSLAPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSI-PSLNLNNAAGLPGACGVSIPYKISTSTDCSKVR 308
            M+V GP++A +A+TCG V+ ++APCIG++  GG +P  CC GV  LN+ ARTTPDRQ AC CL+ AAR++ P+LN   AAG+P ACGVS+P+ IST+T+C+ V+
Sbjct:   15 MIVAGPITANRALTCGTVNSNVAPCIGYITQGGTLPGACCTGVSKLNSMARTTPDRQQACRCLETAARALGPNLNAGRAAGIPKACGVSVPFPISTNTNCNNVK 118          
BLAST of CX289163 vs. ExPASy Swiss-Prot
Match: NLTP1_ARATH (Non-specific lipid-transfer protein 1 OS=Arabidopsis thaliana GN=LTP1 PE=1 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 1.445e-29
Identity = 60/104 (57.69%), Postives = 82/104 (78.85%), Query Frame = 3
Query:    3 MLVTGPLSAQA-ITCGQVSGSLAPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPS-LNLNNAAGLPGACGVSIPYKISTSTDCSKVR 308
            M+V GP+++ A ++CG V+ +LA CIG++  GG IP  CC+GV++LN+ A+TTPDRQ ACNC++ AAR++ S LN   AAG+P ACGV+IPYKISTST+C  VR
Sbjct:   15 MIVAGPITSNAALSCGSVNSNLAACIGYVLQGGVIPPACCSGVKNLNSIAKTTPDRQQACNCIQGAARALGSGLNAGRAAGIPKACGVNIPYKISTSTNCKTVR 118          
BLAST of CX289163 vs. ExPASy Swiss-Prot
Match: NLTPD_BRAOT (Non-specific lipid-transfer protein D OS=Brassica oleracea var. italica GN=WAX9D PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 5.489e-29
Identity = 59/104 (56.73%), Postives = 79/104 (75.96%), Query Frame = 3
Query:    3 MLVTGPLSAQA-ITCGQVSGSLAPCIGFLRSGGP-IPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKVR 308
            M+V GP+++ A ++CG VSG +APCIG+L    P +P  CC+GV SLN  ARTTPDRQ AC CL  AA ++P++N+  AAGLP ACGV+IPYKIS +T+C+ V+
Sbjct:   15 MIVAGPITSNAALSCGTVSGYVAPCIGYLAQNAPAVPTACCSGVTSLNNMARTTPDRQQACRCLVGAANALPTINVARAAGLPKACGVNIPYKISKTTNCNSVK 118          
BLAST of CX289163 vs. ExPASy Swiss-Prot
Match: NLTP1_TOBAC (Non-specific lipid-transfer protein 1 OS=Nicotiana tabacum GN=LTP1 PE=1 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 7.169e-29
Identity = 62/102 (60.78%), Postives = 77/102 (75.49%), Query Frame = 3
Query:    3 MLVTGPLSAQAITCGQVSGSLAPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKVR 308
            M+V  P  A+AITCGQV+ +LAPC+ +LR+ GP+   CC GV++L  +ARTT DRQ AC CLK AA +I  +NL  AAGLP  CGV+IPYKIS STDCSKV+
Sbjct:   15 MVVAAPC-AEAITCGQVTSNLAPCLAYLRNTGPLGR-CCGGVKALVNSARTTEDRQIACTCLKSAAGAISGINLGKAAGLPSTCGVNIPYKISPSTDCSKVQ 114          
BLAST of CX289163 vs. ExPASy Swiss-Prot
Match: NLTP2_GOSHI (Non-specific lipid-transfer protein OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 9.364e-29
Identity = 59/104 (56.73%), Postives = 75/104 (72.12%), Query Frame = 3
Query:    3 MLVTGPLSAQAITCGQVSGSLAPCIGFLRSGGP--IPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKVR 308
            M+V  PL+  A+T GQV+ SLAPCI +LR  G   +P  CC G++SLN+AA+TTP RQ AC C+K AA  I  +N   A+GLPG CGV+IPYKIS STDC+ V+
Sbjct:   17 MVVGAPLAQGAVTSGQVTNSLAPCINYLRGSGAGAVPPGCCTGIKSLNSAAQTTPVRQAACRCIKSAAAGITGINFGLASGLPGKCGVNIPYKISPSTDCNSVK 120          
BLAST of CX289163 vs. ExPASy Swiss-Prot
Match: NLTP1_GOSHI (Non-specific lipid-transfer protein OS=Gossypium hirsutum PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 9.364e-29
Identity = 59/104 (56.73%), Postives = 75/104 (72.12%), Query Frame = 3
Query:    3 MLVTGPLSAQAITCGQVSGSLAPCIGFLRSGGP--IPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKVR 308
            M+V  PL+  A+T GQV+ SLAPCI +LR  G   +P  CC G++SLN+AA+TTP RQ AC C+K AA  I  +N   A+GLPG CGV+IPYKIS STDC+ V+
Sbjct:   13 MVVGAPLAQGAVTSGQVTNSLAPCINYLRGSGAGAVPPGCCTGIKSLNSAAQTTPVRQAACRCIKSAAAGITGINFGLASGLPGKCGVNIPYKISPSTDCNSVK 116          
BLAST of CX289163 vs. ExPASy Swiss-Prot
Match: NLTP1_ORYSJ (Non-specific lipid-transfer protein 1 OS=Oryza sativa subsp. japonica GN=LTP PE=1 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 1.597e-28
Identity = 58/101 (57.43%), Postives = 71/101 (70.30%), Query Frame = 3
Query:    3 MLVTGPLSAQAITCGQVSGSLAPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKV 305
            +L+  P +A AITCGQV+ ++ PC+ + R G      CC+GVRSL AAA TT DR+TACNCLK AAR I  LN  NAA +P  CGVS+PY IS S DCS+V
Sbjct:   15 LLLAAPHAAVAITCGQVNSAVGPCLTYARGGAGPSAACCSGVRSLKAAASTTADRRTACNCLKNAARGIKGLNAGNAASIPSKCGVSVPYTISASIDCSRV 115          
BLAST of CX289163 vs. ExPASy Swiss-Prot
Match: NLTP1_ORYSI (Non-specific lipid-transfer protein 1 OS=Oryza sativa subsp. indica GN=LTP PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 1.597e-28
Identity = 58/101 (57.43%), Postives = 71/101 (70.30%), Query Frame = 3
Query:    3 MLVTGPLSAQAITCGQVSGSLAPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKV 305
            +L+  P +A AITCGQV+ ++ PC+ + R G      CC+GVRSL AAA TT DR+TACNCLK AAR I  LN  NAA +P  CGVS+PY IS S DCS+V
Sbjct:   15 LLLAAPHAAVAITCGQVNSAVGPCLTYARGGAGPSAACCSGVRSLKAAASTTADRRTACNCLKNAARGIKGLNAGNAASIPSKCGVSVPYTISASIDCSRV 115          
BLAST of CX289163 vs. ExPASy Swiss-Prot
Match: NLTP2_SORBI (Non-specific lipid-transfer protein 2 OS=Sorghum bicolor GN=LTP2 PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 2.086e-28
Identity = 59/102 (57.84%), Postives = 73/102 (71.57%), Query Frame = 3
Query:    3 MLVTGPLSAQAITCGQVSGSLAPCIGFLRSGGPIPMP-CCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKV 305
            +++    S  A+TCGQVS ++ PC+ + R  G  P   CC+GVRSLN+AARTT DR+ ACNCLK AAR I  LN+  AA +P  CGVSIPY ISTSTDCS+V
Sbjct:   20 VVLAATTSEAAVTCGQVSSAIGPCLSYARGQGSGPSAGCCSGVRSLNSAARTTADRRAACNCLKNAARGIRGLNVGKAASIPSKCGVSIPYTISTSTDCSRV 121          
The following BLAST results are available for this feature:
BLAST of CX289163 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
NLTP_GERHY1.106e-2961.29Non-specific lipid-transfer protein OS=Gerbera hyb... [more]
NLTPA_BRAOT1.106e-2955.77Non-specific lipid-transfer protein A OS=Brassica ... [more]
NLTP1_ARATH1.445e-2957.69Non-specific lipid-transfer protein 1 OS=Arabidops... [more]
NLTPD_BRAOT5.489e-2956.73Non-specific lipid-transfer protein D OS=Brassica ... [more]
NLTP1_TOBAC7.169e-2960.78Non-specific lipid-transfer protein 1 OS=Nicotiana... [more]
NLTP2_GOSHI9.364e-2956.73Non-specific lipid-transfer protein OS=Gossypium h... [more]
NLTP1_GOSHI9.364e-2956.73Non-specific lipid-transfer protein OS=Gossypium h... [more]
NLTP1_ORYSJ1.597e-2857.43Non-specific lipid-transfer protein 1 OS=Oryza sat... [more]
NLTP1_ORYSI1.597e-2857.43Non-specific lipid-transfer protein 1 OS=Oryza sat... [more]
NLTP2_SORBI2.086e-2857.84Non-specific lipid-transfer protein 2 OS=Sorghum b... [more]

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Properties
Property NameValue
Genbank descriptionC02009H06SK IF1 Citrus clementina cDNA clone C02009H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289163 ID=CX289163; Name=CX289163; organism=Citrus clementina; type=EST; length=491bp
GCATGTTGGTGACTGGTCCCCTGAGTGCTCAGGCCATAACATGTGGGCAG
GTGAGTGGCTCATTGGCACCATGCATCGGTTTCTTGAGATCGGGCGGCCC
TATACCTATGCCATGCTGCAACGGCGTCAGGTCTCTCAACGCTGCCGCCA
GAACCACACCTGACCGCCAAACTGCATGCAACTGCTTGAAGCAAGCCGCC
AGATCAATCCCTAGCCTCAACCTTAATAATGCTGCTGGTCTTCCAGGAGC
TTGTGGAGTCAGCATTCCTTACAAGATCAGCACCTCCACTGACTGCTCTA
AGGTCAGGTGAACAGGAATCTGGGCCGTTGATTTTCAGGTTTAAGTTGAC
GGAGTAGAATAAATGTATAATAATAAGGACATTTTTGTGTCCGATTTATG
AGTCTCTCTCTACACTTTGTACTGCGAGTCTCGTTCGCGCCCTCGTTTCA
TGTTATGTTTTATTGTCTTTGCTTTTCATGTCATCGTCAGT
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