CX289163

Overview
NameCX289163
Unique NameCX289163
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length491
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289163 vs. ExPASy Swiss-Prot
Match: NLTP1_AMAHP (Non-specific lipid-transfer protein 1 OS=Amaranthus hypochondriacus PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 2.556e-18
Identity = 44/94 (46.81%), Postives = 60/94 (63.83%), Query Frame = 3
Query:   33 AITCGQVSGSLAPCIGFLRSGGPIPMP--CCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKVR 308
            A+TC  V+ +L PC+ +L+  G  P P  CC GVRSL AAA+T  DR+ ACNC+K AA+   SLN   AA L   CGV + Y +S + +C+ V+
Sbjct:    1 AVTCTVVTKALGPCMTYLKGTGATPPPANCCAGVRSLKAAAQTVADRRMACNCMKSAAQKTKSLNYKVAARLASQCGVRMSYSVSPNVNCNSVQ 94          
BLAST of CX289163 vs. ExPASy Swiss-Prot
Match: NLTPB_ARATH (Non-specific lipid-transfer protein 11 OS=Arabidopsis thaliana GN=LTP11 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 3.338e-18
Identity = 46/93 (49.46%), Postives = 60/93 (64.52%), Query Frame = 3
Query:   30 QAITCGQVSGSLAPCIGFLRSGG-PIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKV 305
            +AI C QV+  LA C+ +L++GG P PM CCNG+ SL AAA    DRQ ACNCLK  A +IP +N + A  LP  CGV+I    S + DC+ +
Sbjct:   27 EAIACPQVNMYLAQCLPYLKAGGNPSPM-CCNGLNSLKAAAPEKADRQVACNCLKSVANTIPGINDDFAKQLPAKCGVNIGVPFSKTVDCNSI 118          
BLAST of CX289163 vs. ExPASy Swiss-Prot
Match: NLTP1_HELAN (Non-specific lipid-transfer protein AP10 OS=Helianthus annuus PE=1 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 9.090e-16
Identity = 39/91 (42.86%), Postives = 55/91 (60.44%), Query Frame = 3
Query:   33 AITCGQVSGSLAPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKV 305
            AITC  V+G+L PC+ +LRSGG     CC G + L  A RT  DR+TAC C K AA  +  +  + A+ LPG CG+S    I+ + +C+ +
Sbjct:   26 AITCNDVTGNLTPCLPYLRSGGKPTPACCAGAKKLLGATRTQADRRTACKCAKTAAPQL-KVRPDMASSLPGKCGISTSIPINPNVNCNTI 115          
BLAST of CX289163 vs. ExPASy Swiss-Prot
Match: NLTPA_RICCO (Non-specific lipid-transfer protein A OS=Ricinus communis PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 2.645e-15
Identity = 40/91 (43.96%), Postives = 54/91 (59.34%), Query Frame = 3
Query:   36 ITCGQVSGSLAPCIGFLRSGGPIPMP-CCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKV 305
            + CGQV+ SLA CI FL  G   P   CC GV++L   A T+ DR+ AC C+K AA   P++  + A+ LP  CGV I   IS +T+C  +
Sbjct:    1 VDCGQVNSSLASCIPFLTGGVASPSASCCAGVQNLKTLAPTSADRRAACECIKAAAARFPTIKQDAASSLPKKCGVDINIPISKTTNCQAI 91          
BLAST of CX289163 vs. ExPASy Swiss-Prot
Match: NLTP_PINTA (Non-specific lipid-transfer protein OS=Pinus taeda PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 8.508e-14
Identity = 40/93 (43.01%), Postives = 53/93 (56.99%), Query Frame = 3
Query:   33 AITCGQVSGSLAPCIGFLRSGGPIPMP-CCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVS-IPYKISTSTDCSKV 305
            AI+C QV  ++ PC  +L      P   CC  +R L++  + TPDRQ  CNCLK  A+S   + L  AA LPG C V+ +   IS + DCSKV
Sbjct:   31 AISCNQVVSAMTPCATYLIGNAATPAATCCPSIRGLDSQVKATPDRQAVCNCLKTQAKSY-GVKLGKAANLPGLCKVTDLNVPISPNVDCSKV 122          
BLAST of CX289163 vs. ExPASy Swiss-Prot
Match: NLTP8_ARATH (Non-specific lipid-transfer protein 8 OS=Arabidopsis thaliana GN=LTP8 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.451e-13
Identity = 39/95 (41.05%), Postives = 54/95 (56.84%), Query Frame = 3
Query:   24 SAQAITCGQVSGSLAPCIGFLRSG-GPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKV 305
            S  AI+C  V   L PC+ +L SG G  P  CC+GV+SL AA  T+ D++ AC C+K  A S+ ++    A  L   CG S+P   S + DC+ V
Sbjct:   22 SESAISCSVVLQDLQPCVSYLTSGSGNPPETCCDGVKSLAAATTTSADKKAACQCIKSVANSV-TVKPELAQALASNCGASLPVDASPTVDCTTV 115          
BLAST of CX289163 vs. ExPASy Swiss-Prot
Match: NLTPB_RICCO (Non-specific lipid-transfer protein B OS=Ricinus communis PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.096e-12
Identity = 35/91 (38.46%), Postives = 52/91 (57.14%), Query Frame = 3
Query:   36 ITCGQVSGSLAPCIGFLRSGGPIP-MPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKV 305
            + CGQV+ +L+ C+ FL      P + CC GV  L   A T  D++ AC C+K AA   P++  + A+ LP  CGV I   IS +T+C ++
Sbjct:    1 VNCGQVNKALSSCVPFLTGFDTTPSLTCCAGVMELKRLAPTVKDKRIACECVKTAAARYPNIREDAASSLPYKCGVVINVPISKTTNCHEI 91          
The following BLAST results are available for this feature:
BLAST of CX289163 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
NLTP1_AMAHP2.556e-1846.81Non-specific lipid-transfer protein 1 OS=Amaranthu... [more]
NLTPB_ARATH3.338e-1849.46Non-specific lipid-transfer protein 11 OS=Arabidop... [more]
NLTP1_HELAN9.090e-1642.86Non-specific lipid-transfer protein AP10 OS=Helian... [more]
NLTPA_RICCO2.645e-1543.96Non-specific lipid-transfer protein A OS=Ricinus c... [more]
NLTP_PINTA8.508e-1443.01Non-specific lipid-transfer protein OS=Pinus taeda... [more]
NLTP8_ARATH1.451e-1341.05Non-specific lipid-transfer protein 8 OS=Arabidops... [more]
NLTPB_RICCO2.096e-1238.46Non-specific lipid-transfer protein B OS=Ricinus c... [more]

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Properties
Property NameValue
Genbank descriptionC02009H06SK IF1 Citrus clementina cDNA clone C02009H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289163 ID=CX289163; Name=CX289163; organism=Citrus clementina; type=EST; length=491bp
GCATGTTGGTGACTGGTCCCCTGAGTGCTCAGGCCATAACATGTGGGCAG
GTGAGTGGCTCATTGGCACCATGCATCGGTTTCTTGAGATCGGGCGGCCC
TATACCTATGCCATGCTGCAACGGCGTCAGGTCTCTCAACGCTGCCGCCA
GAACCACACCTGACCGCCAAACTGCATGCAACTGCTTGAAGCAAGCCGCC
AGATCAATCCCTAGCCTCAACCTTAATAATGCTGCTGGTCTTCCAGGAGC
TTGTGGAGTCAGCATTCCTTACAAGATCAGCACCTCCACTGACTGCTCTA
AGGTCAGGTGAACAGGAATCTGGGCCGTTGATTTTCAGGTTTAAGTTGAC
GGAGTAGAATAAATGTATAATAATAAGGACATTTTTGTGTCCGATTTATG
AGTCTCTCTCTACACTTTGTACTGCGAGTCTCGTTCGCGCCCTCGTTTCA
TGTTATGTTTTATTGTCTTTGCTTTTCATGTCATCGTCAGT
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