CX289171

Overview
NameCX289171
Unique NameCX289171
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length619
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289171 vs. ExPASy Swiss-Prot
Match: PR12_HORVU (Pathogenesis-related protein PRB1-2 OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.090e-29
Identity = 68/164 (41.46%), Postives = 97/164 (59.15%), Query Frame = 1
Query:   31 PRTSPAIFCLLALATIHLSSAHNKPQDYLKAHNEARASVGVGPMSWDYKLADYSHKHAQKLKGNCNSKKTQVSKYSETIAWSSQG-ELTAAEYVKICMDGKPLYDHNSNTCAINGTKCAVYTQVVWRNSVRLGCAKERCNKNGTHNFVICNYDPPGNVFGQRPY 519
            P+ +  +   +A A ++LS A N PQDY+  HN AR++VGVG +SW  KL  ++  +A +   +C  + +    Y E I W S G +  AA+ V   ++ K  Y++ SNTCA  G  C  YTQVVWR S  +GCA+  CN N    F+ CNY+P GN+ GQ+PY
Sbjct:    4 PKLAILLALAMAAAMVNLSQAQNSPQDYVSPHNAARSAVGVGAVSWSTKLQAFAQNYANQRINDCKLQHSG-GPYGENIFWGSAGADWKAADAVNSWVNEKKDYNYGSNTCAA-GKVCGHYTQVVWRASTSIGCARVVCN-NNRGVFITCNYEPRGNIVGQKPY 164          
BLAST of CX289171 vs. ExPASy Swiss-Prot
Match: PR1A_SOLLC (Pathogenesis-related protein 1A1 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.424e-29
Identity = 70/155 (45.16%), Postives = 91/155 (58.71%), Query Frame = 1
Query:   34 RTSPAIFCLLALATIHLSSAHNKPQDYLKAHNEARASVGVGPMSWDYKLADYSHKHAQKLKGNCNSKKTQVSKYSETIAWSSQGELTAAEYVKICMDGKPLYDHNSNTCAINGTKCAVYTQVVWRNSVRLGCAKERCNKNGTHNFVICNYDPPGN 498
            ++S  + C +     H S A    +++L AHN AR  VGVGPM+WD  LA Y+  +A +   +C    +    Y E +A ++  +L AA  VK+  D K  YD+NSNTCA  G  C  YTQVVWR SVRLGCA+ RCN      F+ CNYDPPGN
Sbjct:    2 KSSIFVACFITFIIFHSSQAQTPRENFLNAHNAARRRVGVGPMTWDDGLAAYAQNYANQRADDCGMIHSD-GPYGENLA-AAFPQLNAAGAVKMWDDEKQWYDYNSNTCA-PGKVCGHYTQVVWRKSVRLGCARVRCNSGWV--FITCNYDPPGN 151          
BLAST of CX289171 vs. ExPASy Swiss-Prot
Match: PRMS_MAIZE (Pathogenesis-related protein PRMS OS=Zea mays GN=PRMS PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.205e-28
Identity = 66/159 (41.51%), Postives = 97/159 (61.01%), Query Frame = 1
Query:   49 IFCLLALAT-IHLSSAHNKPQDYLKAHNEARASVGVGPMSWDYKLADYSHKHAQKLKGNCNSKKTQVSKYSETIAWSSQG-ELTAAEYVKICMDGKPLYDHNSNTCAINGTKCAVYTQVVWRNSVRLGCAKERCNKNGTHNFVICNYDPPGNVFGQRPY 519
            ++ ++A AT +H S + N PQDYL   N ARA+VGVGP++W  KL  ++ K+A +  G+C  + +    Y E I W S G +  A + V+  +D K  Y++ +N+CA  G  C  YTQVVWR +  +GCA+  C  N    F+ICNY+P GN+ G +PY
Sbjct:   12 LWLVMAAATAVHPSYSENSPQDYLTPQNSARAAVGVGPVTWSTKLQQFAEKYAAQRAGDCRLQHSG-GPYGENIFWGSAGFDWKAVDAVRSWVDEKQWYNYATNSCAA-GKVCGHYTQVVWRATTSIGCARVVCRDN-RGVFIICNYEPRGNIAGMKPY 167          
BLAST of CX289171 vs. ExPASy Swiss-Prot
Match: ST14_SOLTU (STS14 protein OS=Solanum tuberosum GN=STS14 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 7.567e-23
Identity = 54/140 (38.57%), Postives = 79/140 (56.43%), Query Frame = 1
Query:  106 QDYLKAHNEARASVGVGPMSWDYKLADYSHK--HAQKLKGNCNSKKTQVSKYSETIAWSSQGELTAAEYVKICMDGKPLYDHNSNTCAINGTKCAVYTQVVWRNSVRLGCAKERCNKNGTHNFVICNYDPPGNVFGQRPY 519
            Q++L AHN+AR+ VGVGP++W   LA  +      Q+ K NC+       KY     W+S   +T    V   +  K  Y++ +N+C     KC VYTQ+VW+ S+ LGCA+  C + G     +C Y+PPGNV G++PY
Sbjct:   77 QEFLDAHNKARSEVGVGPLTWSPMLAKETSLLVRYQRDKQNCSFANLSNGKYGGNQLWASGTVVTPRMAVDSWVAEKKFYNYENNSCT-GDDKCGVYTQIVWKKSIELGCAQRTCYE-GPATLTVCFYNPPGNVIGEKPY 214          
BLAST of CX289171 vs. ExPASy Swiss-Prot
Match: PR1_MEDTR (Pathogenesis-related protein PR-1 OS=Medicago truncatula GN=PR-1 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 9.882e-23
Identity = 62/169 (36.69%), Postives = 94/169 (55.62%), Query Frame = 1
Query:   46 AIFCLLALATIHLSSAH--NKPQ--------DYLKAHNEARASVGVGPMSWDYKLADYSHKHAQKLKGNCNSKKTQVSKYSETIAWSSQGELTAAEYVKICMDGKPLYDHNSNTCAINGTKCAVYTQVVWRNSVRLGCAKERCNKN-GTHNFVICNYDPPGNVFGQRPY 519
            A+F LL     H+S+++  NK           +L   N ARA+VG+ P+ WD KL  Y+  +A + + +C  + +    Y E I W S      A+ V   +D K  Y++  N+C ++G  C  YTQVVW ++ ++GCA   C+ + GT  F+ CNYDPPGN +G+RPY
Sbjct:    9 ALFLLLLTFISHVSASYIPNKKSFKSRSFKNQFLIPQNIARAAVGLRPLVWDDKLTHYAQWYANQRRNDCALEHSN-GPYGENIFWGSGVGWNPAQAVSAWVDEKQFYNYWHNSC-VDGEMCGHYTQVVWGSTTKVGCASVVCSDDKGT--FMTCNYDPPGNYYGERPY 173          
BLAST of CX289171 vs. ExPASy Swiss-Prot
Match: GPRL1_BOVIN (GLIPR1-like protein 1 OS=Bos taurus GN=GLIPR1L1 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 5.435e-13
Identity = 49/152 (32.24%), Postives = 77/152 (50.66%), Query Frame = 1
Query:  106 QDYLKAHNEARASVG-----VGPMSWDYKLADYSHKHAQKLK---GNCNSKKTQVS---KYSETIAWSSQGELTAAEY-VKICMDGKPLYDHNSNTCAINGTKCAVYTQVVWRNSVRLGCAKERCNKNGTHN--FVICNYDPPGNVFGQRPY 519
            ++ L+ HNEAR +V      +  MSWD  LA  +   A+K K    +C+SK  +     +Y+    W     ++AA++ + +  D +  YD N+ +C+     C  YTQVVW  S ++GCA   C   G+ +   ++CNY P GN     PY
Sbjct:   36 EECLRLHNEARTNVSPPAADMKYMSWDEALAKTAEAWAKKCKFIHNSCSSKSFKCHPTFQYAGENLWLGPLTISAAKFAINMWYDERKFYDFNTRSCS---QVCGHYTQVVWAYSYKVGCAVAVCPNLGSPDSALLVCNYAPAGNYPNMSPY 184          
BLAST of CX289171 vs. ExPASy Swiss-Prot
Match: PI16_MOUSE (Peptidase inhibitor 16 OS=Mus musculus GN=Pi16 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.339e-11
Identity = 48/170 (28.24%), Postives = 80/170 (47.06%), Query Frame = 1
Query:   43 PAIFCLLALATIHLSS-AHNKPQDYLKAHNEARASVG-----VGPMSWDYKLADYSHKHAQKLKGNCNSKKTQVSKYSETIAWSSQGELTAAEYVKICMDGKPLYDHNSNTCAINGTKCAVYTQVVWRNSVRLGCAKERCN-----KNGTHNFVICNYDPPGNVFGQRPY 519
            P +  LL +AT   ++   ++ Q  +  HN+ RA V      +  M WD +LA ++  +AQK     N ++    +  E +   +   +     V    +    Y+ ++ TC  N   C  YTQVVW  + R+GC    C      +    + ++CNY+PPGNV G++PY
Sbjct:    5 PLLLLLLLIATGPTTALTEDEKQTMVDLHNQYRAQVSPPASDMLQMRWDDELAAFAKAYAQKCVWGHNKER---GRRGENLFAITDEGMDVPLAVGNWHEEHEYYNFSTATCDPN-QMCGHYTQVVWSKTERIGCGSHFCETLQGVEEANIHLLVCNYEPPGNVKGRKPY 170          
The following BLAST results are available for this feature:
BLAST of CX289171 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
PR12_HORVU1.090e-2941.46Pathogenesis-related protein PRB1-2 OS=Hordeum vul... [more]
PR1A_SOLLC1.424e-2945.16Pathogenesis-related protein 1A1 OS=Solanum lycope... [more]
PRMS_MAIZE1.205e-2841.51Pathogenesis-related protein PRMS OS=Zea mays GN=P... [more]
ST14_SOLTU7.567e-2338.57STS14 protein OS=Solanum tuberosum GN=STS14 PE=2 S... [more]
PR1_MEDTR9.882e-2336.69Pathogenesis-related protein PR-1 OS=Medicago trun... [more]
GPRL1_BOVIN5.435e-1332.24GLIPR1-like protein 1 OS=Bos taurus GN=GLIPR1L1 PE... [more]
PI16_MOUSE1.339e-1128.24Peptidase inhibitor 16 OS=Mus musculus GN=Pi16 PE=... [more]

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Properties
Property NameValue
Genbank descriptionC02010A04SK IF1 Citrus clementina cDNA clone C02010A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289171 ID=CX289171; Name=CX289171; organism=Citrus clementina; type=EST; length=619bp
AGCGAAATTAAAACAGTAATCACCATAATGCCAAGAACTTCACCAGCAAT
TTTTTGCCTCTTAGCCCTAGCTACAATCCATCTCTCCTCTGCCCACAATA
AACCTCAAGACTACCTCAAAGCTCACAACGAGGCTCGTGCTAGTGTTGGC
GTTGGCCCGATGTCATGGGACTACAAATTGGCGGATTATTCACATAAACA
TGCACAAAAACTTAAGGGTAACTGCAATTCAAAGAAAACTCAAGTTAGCA
AATACAGTGAGACAATTGCATGGAGCAGCCAGGGCGAGCTTACCGCCGCC
GAGTATGTGAAGATCTGTATGGATGGGAAGCCATTATACGACCACAACTC
TAATACTTGTGCTATTAATGGTACGAAATGCGCAGTCTATACTCAAGTTG
TGTGGCGCAATTCTGTGCGTTTAGGTTGTGCTAAAGAGAGGTGCAATAAA
AATGGCACCCACAACTTTGTCATTTGCAACTACGATCCCCCAGGCAACGT
TTTTGGTCAACGTCCTTACTAGTGGATCATAAAGAAACTTTCCTCTATAA
ATGAGACCAGAGGGCTATGCATGAATAAGTCATGCCGGTGGCAGATATCC
GAGAACAATAAATCAAGCT
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