CX289173

Overview
NameCX289173
Unique NameCX289173
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length613
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12725 contig Ccv1_Contig12725:171..783. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX289173 vs. ExPASy Swiss-Prot
Match: AQP_AEDAE (Aquaporin AQPAe.a OS=Aedes aegypti GN=AAEL003512 PE=2 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 5.320e-13
Identity = 41/115 (35.65%), Postives = 65/115 (56.52%), Query Frame = 1
Query:  232 SFYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGG 576
            + +R  +AEF+ TF  + I + + MG     +   T     IA+ FG ++  L      +SG HINPAVT GL +   +S+ +  FY++ QC+GAI GAA++K    S  +++GG
Sbjct:   21 NIWRMLVAEFLGTFFLVSIGIGSTMGWGGDYAPTMTQ----IAFTFGLVVATLAQAFGHVSGCHINPAVTIGLMITADISILKGAFYIVSQCVGAIAGAALIKAATPS--DVIGG 129          
BLAST of CX289173 vs. ExPASy Swiss-Prot
Match: TIP22_ORYSJ (Probable aquaporin TIP2-2 OS=Oryza sativa subsp. japonica GN=TIP2-2 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.948e-13
Identity = 40/102 (39.22%), Postives = 61/102 (59.80%), Query Frame = 1
Query:  241 RAGIAEFVATFLFLYITVLTVMGVSK--SKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVK 540
            +A +AEF++T +F++  V + +  +K    +     G+  +A   G  +F  V   A ISGGH+NPAVTFGL L  ++++   VFY I Q LGAI GA +V+
Sbjct:   20 KAYVAEFISTLVFVFAGVGSAIAYTKLTGGAPLDPAGLVAVAVCHGFGLFVAVAIGANISGGHVNPAVTFGLALGGQITILTGVFYWIAQLLGAIVGAVLVQ 121          
BLAST of CX289173 vs. ExPASy Swiss-Prot
Match: AQP4_BOVIN (Aquaporin-4 OS=Bos taurus GN=AQP4 PE=2 SV=3)

HSP 1 Score: 73.9442 bits (180), Expect = 6.948e-13
Identity = 39/102 (38.24%), Postives = 64/102 (62.75%), Query Frame = 1
Query:  232 SFYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVV 537
            +F++A  AEF+A  +F+ +++ + +    ++ K   V +  I+  FG  I  +V C   ISGGHINPAVT  +   R++S+ ++VFY+  QCLGAI GA ++
Sbjct:   33 TFWKAVTAEFLAMLIFVLLSLGSTINWGGAE-KPLPVDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRRISIAKSVFYIAAQCLGAIIGAGIL 133          
BLAST of CX289173 vs. ExPASy Swiss-Prot
Match: AQP5_RAT (Aquaporin-5 OS=Rattus norvegicus GN=Aqp5 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 9.074e-13
Identity = 41/107 (38.32%), Postives = 63/107 (58.88%), Query Frame = 1
Query:  217 ELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVV 537
            E+ S +F++A  AEF+AT +F++  + + +     K   +   I  I+ AFG  I  L      +SGGHINPA+T  L +  ++SL RAVFY+  Q +GAI GA ++
Sbjct:    4 EVCSLAFFKAVFAEFLATLIFVFFGLGSAL-----KWPSALPTILQISIAFGLAIGTLAQALGPVSGGHINPAITLALLIGNQISLLRAVFYVAAQLVGAIAGAGIL 105          
BLAST of CX289173 vs. ExPASy Swiss-Prot
Match: TIP12_MAIZE (Aquaporin TIP1-2 OS=Zea mays GN=TIP1-2 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.185e-12
Identity = 40/112 (35.71%), Postives = 62/112 (55.36%), Query Frame = 1
Query:  211 PGELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSK--SKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVK 540
            PGELS     +A +AEF++T +F++    + M  SK       +  G+   + A    +F  V   A ISGGH+NPAVTFG F+   +SL +A+ Y + Q LG++    ++K
Sbjct:   11 PGELSHPDTAKAAVAEFISTLIFVFAGSGSGMAFSKLTDGGAATPAGLIAASLAHALALFVAVSVGANISGGHVNPAVTFGAFVGGNISLLKALVYWVAQLLGSVVACLLLK 122          
BLAST of CX289173 vs. ExPASy Swiss-Prot
Match: MIP_SHEEP (Lens fiber major intrinsic protein OS=Ovis aries GN=MIP PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.185e-12
Identity = 43/107 (40.19%), Postives = 62/107 (57.94%), Query Frame = 1
Query:  217 ELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVV 537
            EL S SF+RA  AEF AT  +++      +G S   +    + +  +A AFG  +  LV     ISG H+NPAVTF   +  ++SL RA+ Y++ Q LGA+ GAAV+
Sbjct:    3 ELRSASFWRAIFAEFFATLFYVFFG----LGASLRWAP-GPLHVLQVALAFGLALATLVQAVGHISGAHVNPAVTFAFLVGSQMSLLRAICYVVAQLLGAVAGAAVL 104          
BLAST of CX289173 vs. ExPASy Swiss-Prot
Match: MIP_RABIT (Lens fiber major intrinsic protein OS=Oryctolagus cuniculus GN=MIP PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.185e-12
Identity = 44/107 (41.12%), Postives = 61/107 (57.01%), Query Frame = 1
Query:  217 ELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVV 537
            EL S SF+RA  AEF AT  +++      +G S   +    + +  +A AFG  +  LV     ISG H+NPAVTF   +  ++SL RA+ YM  Q LGA+ GAAV+
Sbjct:    3 ELRSASFWRAIFAEFFATLFYVFFG----LGASLRWAP-GPLHVLQVALAFGLALATLVQAVGHISGAHVNPAVTFAFLVGSQMSLLRAICYMAAQLLGAVAGAAVL 104          
BLAST of CX289173 vs. ExPASy Swiss-Prot
Match: MIP_BOVIN (Lens fiber major intrinsic protein OS=Bos taurus GN=MIP PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.548e-12
Identity = 43/107 (40.19%), Postives = 62/107 (57.94%), Query Frame = 1
Query:  217 ELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVV 537
            EL S SF+RA  AEF A+  +++      +G S   +    + +  +A AFG  +  LV     ISG H+NPAVTF   +  ++SL RA+ YM+ Q LGA+ GAAV+
Sbjct:    3 ELRSASFWRAICAEFFASLFYVFFG----LGASLRWAP-GPLHVLQVALAFGLALATLVQAVGHISGAHVNPAVTFAFLVGSQMSLLRAICYMVAQLLGAVAGAAVL 104          
BLAST of CX289173 vs. ExPASy Swiss-Prot
Match: AQP5_MOUSE (Aquaporin-5 OS=Mus musculus GN=Aqp5 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.548e-12
Identity = 40/107 (37.38%), Postives = 63/107 (58.88%), Query Frame = 1
Query:  217 ELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVV 537
            E+ S +F++A  AEF+AT +F++  + + +     K   +   I  I+ AFG  I  L      +SGGHINPA+T  L +  ++SL RA+FY+  Q +GAI GA ++
Sbjct:    4 EVCSVAFFKAVFAEFLATLIFVFFGLGSAL-----KWPSALPTILQISIAFGLAIGTLAQALGPVSGGHINPAITLALLIGNQISLLRAIFYVAAQLVGAIAGAGIL 105          
BLAST of CX289173 vs. ExPASy Swiss-Prot
Match: TIP31_MAIZE (Aquaporin TIP3-1 OS=Zea mays GN=TIP3-1 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.021e-12
Identity = 38/101 (37.62%), Postives = 58/101 (57.43%), Query Frame = 1
Query:  241 RAGIAEFVATFLFLYITVLTVMGVSKSKSKCSTVG-IQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVK 540
            RA I+EF+AT +F++    +V+ + K     ST G +  +A A    +   V     ISGGH+NPAVTFG  +  ++SL RAV Y + Q LGA+    +++
Sbjct:   26 RAAISEFIATAIFVFAAEGSVLSLGKMYHDMSTAGGLVAVALAHALALAVAVAVAVNISGGHVNPAVTFGALVGGRVSLVRAVLYWVAQLLGAVAATLLLR 126          
The following BLAST results are available for this feature:
BLAST of CX289173 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 98
Match NameE-valueIdentityDescription
AQP_AEDAE5.320e-1335.65Aquaporin AQPAe.a OS=Aedes aegypti GN=AAEL003512 P... [more]
TIP22_ORYSJ6.948e-1339.22Probable aquaporin TIP2-2 OS=Oryza sativa subsp. j... [more]
AQP4_BOVIN6.948e-1338.24Aquaporin-4 OS=Bos taurus GN=AQP4 PE=2 SV=3[more]
AQP5_RAT9.074e-1338.32Aquaporin-5 OS=Rattus norvegicus GN=Aqp5 PE=2 SV=1[more]
TIP12_MAIZE1.185e-1235.71Aquaporin TIP1-2 OS=Zea mays GN=TIP1-2 PE=2 SV=1[more]
MIP_SHEEP1.185e-1240.19Lens fiber major intrinsic protein OS=Ovis aries G... [more]
MIP_RABIT1.185e-1241.12Lens fiber major intrinsic protein OS=Oryctolagus ... [more]
MIP_BOVIN1.548e-1240.19Lens fiber major intrinsic protein OS=Bos taurus G... [more]
AQP5_MOUSE1.548e-1237.38Aquaporin-5 OS=Mus musculus GN=Aqp5 PE=2 SV=1[more]
TIP31_MAIZE2.021e-1237.62Aquaporin TIP3-1 OS=Zea mays GN=TIP3-1 PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC02010A06SK IF1 Citrus clementina cDNA clone C02010A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289173 ID=CX289173; Name=CX289173; organism=Citrus clementina; type=EST; length=613bp
AATGGCACGAGGCATTTATTGATTCAATTCACTCCCAAGAAACTTGAACC
TATCTTGTCTATTAATTTTCACAAGAACATAATGGAGGGCAAAGAAGAGG
ATGTAAGAGTGGGAGCAAATAGGTATCGAGAGAGTCAACCTATTGGAACC
GCGGCTCAGACTCAGGATGTGAAGGATTACACGGAGCCACCTCCGGCGCC
GCTCTTTGAGCCCGGCGAATTATCGTCGTGGTCCTTTTACAGGGCTGGCA
TTGCGGAGTTTGTGGCCACGTTCTTGTTTCTTTACATCACTGTTCTAACA
GTGATGGGCGTGTCCAAATCCAAAAGCAAATGTTCCACTGTGGGAATCCA
GGGCATCGCTTGGGCTTTTGGCGGCATGATCTTCGCTCTAGTCTACTGCA
CTGCTGGCATTTCAGGGGGTCACATTAACCCAGCGGTGACATTCGGGCTG
TTCTTGGCCCGAAAGCTGTCGCTTACCAGGGCAGTTTTTTACATGATAAT
GCAGTGTTTAGGGGCCATATGCGGTGCCGCCGTTGTAAAGGGCTTTCAGA
AAAGCCAATATGAAATGCTAGGCGGCGGTGCCAACATGCTCAGCAAAGGC
TACAGCAAGGGAG
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