CX289173

Overview
NameCX289173
Unique NameCX289173
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length613
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12725 contig Ccv1_Contig12725:171..783. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX289173 vs. ExPASy Swiss-Prot
Match: TIP23_ARATH (Aquaporin TIP2-3 OS=Arabidopsis thaliana GN=TIP2-3 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 7.681e-12
Identity = 41/104 (39.42%), Postives = 58/104 (55.77%), Query Frame = 1
Query:  214 GELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSK--SKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAI 519
            G+  S S  +A ++EF+AT LF++  V + +  +K  S       G+  IA A    +F  V   A ISGGH+NPAVT GL +   ++L    FY I QCLG+I
Sbjct:   10 GDSFSVSSLKAYLSEFIATLLFVFAGVGSAVAFAKLTSDGALDPAGLVAIAIAHAFALFVGVSIAANISGGHLNPAVTLGLAIGGNITLITGFFYWIAQCLGSI 113          
BLAST of CX289173 vs. ExPASy Swiss-Prot
Match: MIP_CAVPO (Lens fiber major intrinsic protein OS=Cavia porcellus GN=MIP PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 7.681e-12
Identity = 44/107 (41.12%), Postives = 60/107 (56.07%), Query Frame = 1
Query:  217 ELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVV 537
            EL S SF+RA  AEF AT  +++      +G S   +    + +  +A AFG  +  LV     ISG H+NPAVTF   +  ++SL RA  YM  Q LGA+ GAAV+
Sbjct:    3 ELRSASFWRAIFAEFFATLFYVFFG----LGASLRWAP-GPLHVLQVALAFGLALAXLVQTVGHISGAHVNPAVTFXFLVGSQMSLLRAFCYMAAQLLGAVAGAAVL 104          
BLAST of CX289173 vs. ExPASy Swiss-Prot
Match: TIP_ANTMA (Probable aquaporin TIP-type OS=Antirrhinum majus GN=DIP PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.003e-11
Identity = 38/111 (34.23%), Postives = 62/111 (55.86%), Query Frame = 1
Query:  214 GELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSK--SKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVK 540
            G+  S +  +A +AEF+AT LF++  V + +  +K  S +     G+  +A A    +F  V   A +SGGH+NPAVT GL +   +++   +FY I QCLG+     ++K
Sbjct:   10 GDSFSVASIKAYVAEFIATLLFVFAGVGSAIAYNKLTSDAALDPAGLVAVAVAHAFALFVGVSMAANVSGGHLNPAVTLGLAVGGNITILTGLFYWIAQCLGSTVACLLLK 120          
BLAST of CX289173 vs. ExPASy Swiss-Prot
Match: BIB_DROME (Neurogenic protein big brain OS=Drosophila melanogaster GN=bib PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.003e-11
Identity = 42/116 (36.21%), Postives = 61/116 (52.59%), Query Frame = 1
Query:  217 ELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVKGFQKSQYE 564
            E+ +  F+R+ I+E +A+F++++I      GV    S  S   +   A A G  +  L  C   ISG HINPAVT  L + R +S  RA  Y+  QC G I GAA++ G     Y+
Sbjct:   58 EIRTLEFWRSIISECLASFMYVFIVCGAAAGVGVGASVSSV--LLATALASGLAMATLTQCFLHISGAHINPAVTLALCVVRSISPIRAAMYITAQCGGGIAGAALLYGVTVPGYQ 171          
BLAST of CX289173 vs. ExPASy Swiss-Prot
Match: TIPA_PHAVU (Probable aquaporin TIP-type alpha OS=Phaseolus vulgaris PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.310e-11
Identity = 38/102 (37.25%), Postives = 61/102 (59.80%), Query Frame = 1
Query:  241 RAGIAEFVATFLFLYITVLTVMGVSK--SKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVK 540
            RA +AEF +TF+F++    + + + K    S  S   +  +A A    +FA V  +  +SGGH+NPAV+FG  +  ++S+ RAV+Y I Q LG+I  A V++
Sbjct:   21 RASLAEFASTFIFVFAGEGSGLALVKIYQDSAFSAGELLALALAHAFALFAAVSASMHVSGGHVNPAVSFGALIGGRISVIRAVYYWIAQLLGSIVAALVLR 122          
BLAST of CX289173 vs. ExPASy Swiss-Prot
Match: MIP_RAT (Lens fiber major intrinsic protein (Fragment) OS=Rattus norvegicus GN=Mip PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.310e-11
Identity = 42/107 (39.25%), Postives = 59/107 (55.14%), Query Frame = 1
Query:  217 ELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVV 537
            EL S SF+RA  AEF AT  +++  +      S  +     + +  +A AFG  +  LV     ISG H+NPAVTF   +  ++SL RA  Y+  Q LGA+ GAAV+
Sbjct:    1 ELRSASFWRAIFAEFFATLFYVFFGL-----GSSLRWAPGPLHVLQVALAFGLALATLVQTVGHISGAHVNPAVTFAFLVGSQMSLLRAFCYIAAQLLGAVAGAAVL 102          
BLAST of CX289173 vs. ExPASy Swiss-Prot
Match: MIP_MOUSE (Lens fiber major intrinsic protein OS=Mus musculus GN=Mip PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.310e-11
Identity = 43/107 (40.19%), Postives = 60/107 (56.07%), Query Frame = 1
Query:  217 ELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVV 537
            EL S SF+RA  AEF AT  +++      +G S   +    + +  +A AFG  +  LV     ISG H+NPAVTF   +  ++SL RA  Y+  Q LGA+ GAAV+
Sbjct:    3 ELRSASFWRAIFAEFFATLFYVFFG----LGASLRWAP-GPLHVLQVALAFGLALATLVQTVGHISGAHVNPAVTFAFLVGSQMSLLRAFCYIAAQLLGAVAGAAVL 104          
BLAST of CX289173 vs. ExPASy Swiss-Prot
Match: AQP2_MOUSE (Aquaporin-2 OS=Mus musculus GN=Aqp2 PE=2 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.310e-11
Identity = 43/107 (40.19%), Postives = 60/107 (56.07%), Query Frame = 1
Query:  217 ELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVV 537
            EL S +F RA +AEF+AT LF++  + + +  + S        +  IA AFG  I  LV     +SG HINPAVT    +   +S  RA FY+  Q LGA+ GAA++
Sbjct:    3 ELRSIAFSRAVLAEFLATLLFVFFGLGSALQWASSPPS-----VLQIAVAFGLGIGTLVQALGHVSGAHINPAVTVACLVGCHVSFLRAAFYVAAQLLGAVAGAAIL 104          
BLAST of CX289173 vs. ExPASy Swiss-Prot
Match: TIP51_ORYSJ (Probable aquaporin TIP5-1 OS=Oryza sativa subsp. japonica GN=TIP5;1 PE=2 SV=3)

HSP 1 Score: 69.3218 bits (168), Expect = 1.711e-11
Identity = 46/129 (35.66%), Postives = 65/129 (50.39%), Query Frame = 1
Query:  241 RAGIAEFVATFLFLYI----TVLTVMGVSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVKGFQKSQ--------YEMLGGGANML 591
            RA  AEF +TFLF++I    T+   M      S  S++    +A AFG  +FA V+  A +SGGH+NPAVTF   +   +++  A+FY   Q LG+     V+      Q         EM G GA +L
Sbjct:   18 RAYFAEFFSTFLFVFIAVGSTISARMLTPDETSDASSLMATAVAQAFG--LFAAVFIAADVSGGHVNPAVTFAYAIGGHITVPSAIFYWASQMLGSTFACLVLHYISAGQAVPTTRIAVEMTGFGAGIL 144          
BLAST of CX289173 vs. ExPASy Swiss-Prot
Match: AQP2_RAT (Aquaporin-2 OS=Rattus norvegicus GN=Aqp2 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.711e-11
Identity = 43/107 (40.19%), Postives = 60/107 (56.07%), Query Frame = 1
Query:  217 ELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVV 537
            EL S +F RA +AEF+AT LF++  + + +  + S        +  IA AFG  I  LV     +SG HINPAVT    +   +S  RA FY+  Q LGA+ GAA++
Sbjct:    3 ELRSIAFSRAVLAEFLATLLFVFFGLGSALQWASSPPS-----VLQIAVAFGLGIGILVQALGHVSGAHINPAVTVACLVGCHVSFLRAAFYVAAQLLGAVAGAAIL 104          
The following BLAST results are available for this feature:
BLAST of CX289173 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 98
Match NameE-valueIdentityDescription
TIP23_ARATH7.681e-1239.42Aquaporin TIP2-3 OS=Arabidopsis thaliana GN=TIP2-3... [more]
MIP_CAVPO7.681e-1241.12Lens fiber major intrinsic protein OS=Cavia porcel... [more]
TIP_ANTMA1.003e-1134.23Probable aquaporin TIP-type OS=Antirrhinum majus G... [more]
BIB_DROME1.003e-1136.21Neurogenic protein big brain OS=Drosophila melanog... [more]
TIPA_PHAVU1.310e-1137.25Probable aquaporin TIP-type alpha OS=Phaseolus vul... [more]
MIP_RAT1.310e-1139.25Lens fiber major intrinsic protein (Fragment) OS=R... [more]
MIP_MOUSE1.310e-1140.19Lens fiber major intrinsic protein OS=Mus musculus... [more]
AQP2_MOUSE1.310e-1140.19Aquaporin-2 OS=Mus musculus GN=Aqp2 PE=2 SV=2[more]
TIP51_ORYSJ1.711e-1135.66Probable aquaporin TIP5-1 OS=Oryza sativa subsp. j... [more]
AQP2_RAT1.711e-1140.19Aquaporin-2 OS=Rattus norvegicus GN=Aqp2 PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC02010A06SK IF1 Citrus clementina cDNA clone C02010A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289173 ID=CX289173; Name=CX289173; organism=Citrus clementina; type=EST; length=613bp
AATGGCACGAGGCATTTATTGATTCAATTCACTCCCAAGAAACTTGAACC
TATCTTGTCTATTAATTTTCACAAGAACATAATGGAGGGCAAAGAAGAGG
ATGTAAGAGTGGGAGCAAATAGGTATCGAGAGAGTCAACCTATTGGAACC
GCGGCTCAGACTCAGGATGTGAAGGATTACACGGAGCCACCTCCGGCGCC
GCTCTTTGAGCCCGGCGAATTATCGTCGTGGTCCTTTTACAGGGCTGGCA
TTGCGGAGTTTGTGGCCACGTTCTTGTTTCTTTACATCACTGTTCTAACA
GTGATGGGCGTGTCCAAATCCAAAAGCAAATGTTCCACTGTGGGAATCCA
GGGCATCGCTTGGGCTTTTGGCGGCATGATCTTCGCTCTAGTCTACTGCA
CTGCTGGCATTTCAGGGGGTCACATTAACCCAGCGGTGACATTCGGGCTG
TTCTTGGCCCGAAAGCTGTCGCTTACCAGGGCAGTTTTTTACATGATAAT
GCAGTGTTTAGGGGCCATATGCGGTGCCGCCGTTGTAAAGGGCTTTCAGA
AAAGCCAATATGAAATGCTAGGCGGCGGTGCCAACATGCTCAGCAAAGGC
TACAGCAAGGGAG
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