CX289180

Overview
NameCX289180
Unique NameCX289180
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length617
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289180 vs. ExPASy Swiss-Prot
Match: Y5241_ARATH (Probable receptor-like protein kinase At5g24010 OS=Arabidopsis thaliana GN=At5g24010 PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 5.021e-19
Identity = 59/151 (39.07%), Postives = 80/151 (52.98%), Query Frame = 1
Query:    1 DFGLSRLAPVPDIEGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMQPISHGKNIVREVNIA------YQSSMMFSVIDGNMGSYPSEC-VEKFIKLALKCCQDETDARPSMSEVMRELESIWNMMPESDTKTPE 432
            DFGLSR  P  D       HVST VKG+ GYLDPEYF   +LTDKSDVYS GVV  E+L   +P      +  +VN+A       +  M+  ++D N+      C ++KF + A KCC D    RP++ +V+  LE +  +        PE
Sbjct:  631 DFGLSRSGPCID-----ETHVSTGVKGSFGYLDPEYFRRQQLTDKSDVYSFGVVLFEVLCA-RPAVDPLLVREQVNLAEWAIEWQRKGMLDQIVDPNIADEIKPCSLKKFAETAEKCCADYGVDRPTIGDVLWNLEHVLQLQESGPLNIPE 775          
BLAST of CX289180 vs. ExPASy Swiss-Prot
Match: Y4245_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At4g20450 OS=Arabidopsis thaliana GN=At4g20450 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 6.558e-19
Identity = 55/133 (41.35%), Postives = 78/133 (58.65%), Query Frame = 1
Query:    1 DFGLSRLAPVPDIEGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMQPISHGK---NIVREVNIAYQSSMMFSVIDGNM-GSYPSECVEKFIKLALKCCQDETDARPSMSEVMRELE 387
            DFGLSR  PV         HVST V G+PGYLDPEY+ T+ LT+KSDV+S GVV LE++T    I   +   +I   V     +  + +++D +M G Y S  + K ++LA+ C    +  RP+MS+V  EL+
Sbjct:  734 DFGLSRSFPVGS-----ETHVSTNVAGSPGYLDPEYYRTNWLTEKSDVFSFGVVLLEIITSQPVIDQTREKSHIGEWVGFKLTNGDIKNIVDPSMNGDYDSSSLWKALELAMSCVSPSSSGRPNMSQVANELQ 861          
BLAST of CX289180 vs. ExPASy Swiss-Prot
Match: Y5487_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At5g48740 OS=Arabidopsis thaliana GN=At5g48740 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 8.565e-19
Identity = 53/139 (38.13%), Postives = 81/139 (58.27%), Query Frame = 1
Query:    1 DFGLSRLAPVPDIEGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMQPISHGK-----NIVREVNIAYQSSMMFSVIDGNMGSYPSECVEKFIKLALKCCQDETDARPSMSEVMRELESIWNM 402
            DFGLS+     D      +H++TVVKGT GYLDPEY+ T +LT+KSDVYS GVV LEL+ G +P+SH       N+V       Q+     V D    ++    ++K   +A++C   +   RPS++EV+ +L+  +++
Sbjct:  750 DFGLSKQFTKADA-----SHITTVVKGTAGYLDPEYYSTLQLTEKSDVYSFGVVLLELICGREPLSHSGSPDSFNLVLWARPNLQAGAFEIVDDILKETFDPASMKKAASIAIRCVGRDASGRPSIAEVLTKLKEAYSL 883          
BLAST of CX289180 vs. ExPASy Swiss-Prot
Match: Y1518_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g51860 OS=Arabidopsis thaliana GN=At1g51860 PE=2 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 8.565e-19
Identity = 56/132 (42.42%), Postives = 76/132 (57.58%), Query Frame = 1
Query:    1 DFGLSRLAPVPDIEGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMQPISHGK---NIVREVNIAYQSSMMFSVIDGN-MGSYPSECVEKFIKLALKCCQDETDARPSMSEVMREL 384
            DFGLSR  P+         HVSTVV GTPGYLDPEY+ T+ L++KSDVYS GVV LE++T    I   +   +I   V        + S++D   MG Y +    K ++LAL C    ++ RP+M+ V+ EL
Sbjct:  726 DFGLSRSFPIDG-----ECHVSTVVAGTPGYLDPEYYRTNWLSEKSDVYSFGVVLLEIVTNQPVIDKTRERPHINDWVGFMLTKGDIKSIVDPKLMGDYDTNGAWKIVELALACVNPSSNRRPTMAHVVMEL 852          
BLAST of CX289180 vs. ExPASy Swiss-Prot
Match: Y5181_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g51810 OS=Arabidopsis thaliana GN=At1g51810 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.461e-18
Identity = 60/133 (45.11%), Postives = 78/133 (58.65%), Query Frame = 1
Query:    1 DFGLSRLAPVPDIEGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMQPISHG---KNIVREVNIAYQSSMMFSVIDGN-MGSYPSECVEKFIKLALKCCQDETDARPSMSEVMRELE 387
            DFGLSR  P   IEG    HVSTVV GT GYLDPEY+ T+ LT+KSDVYS GVV L ++T    I      ++I   V        + S+ D N +G Y S  V K ++LA+ C    +  RP+MS+V+ EL+
Sbjct:  720 DFGLSRSFP---IEG--ETHVSTVVAGTIGYLDPEYYRTNWLTEKSDVYSFGVVLLVMITNQPVIDQNREKRHIAEWVGGMLTKGDIKSITDPNLLGDYNSGSVWKAVELAMSCMNPSSMTRPTMSQVVFELK 847          
BLAST of CX289180 vs. ExPASy Swiss-Prot
Match: Y5596_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At5g59680 OS=Arabidopsis thaliana GN=At5g59680 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.908e-18
Identity = 53/133 (39.85%), Postives = 77/133 (57.89%), Query Frame = 1
Query:    1 DFGLSRLAPVPDIEGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMQPISHGK---NIVREVNIAYQSSMMFSVIDGNM-GSYPSECVEKFIKLALKCCQDETDARPSMSEVMRELE 387
            DFGLSR  PV        +HVSTV+ GTPGYLDPEY+ T +L++KSDVYS G+V LE++T    I   +   +I + V        +  ++D  + G Y S    + ++LA+ C    +  RP+MS V+ EL+
Sbjct:  723 DFGLSRSFPVGG-----ESHVSTVIAGTPGYLDPEYYHTSRLSEKSDVYSFGIVLLEMITNQAVIDRNRRKSHITQWVGSELNGGDIAKIMDLKLNGDYDSRSAWRALELAMSCADPTSARRPTMSHVVIELK 850          
BLAST of CX289180 vs. ExPASy Swiss-Prot
Match: Y5389_ARATH (Probable receptor-like protein kinase At5g38990 OS=Arabidopsis thaliana GN=At5g38990 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.908e-18
Identity = 57/135 (42.22%), Postives = 79/135 (58.52%), Query Frame = 1
Query:    1 DFGLSRLAPVPDIEGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELL----TGMQPI-SHGKNIVREVNIAYQSSMMFSVIDGNM-GSYPSECVEKFIKLALKCCQDETDARPSMSEVMRELE 387
            DFGLSR+ P    +     HVSTVVKGT GYLDPEY+    LT+KSDVYS GVV LE+L      MQ +     +++R V   +    +  +ID ++     S  +EKF ++A++C QD    RP M++V+  LE
Sbjct:  671 DFGLSRVGPTSASQ----THVSTVVKGTFGYLDPEYYRRQILTEKSDVYSFGVVLLEVLCCRPIRMQSVPPEQADLIRWVKSNFNKRTVDQIIDSDLTADITSTSMEKFCEIAIRCVQDRGMERPPMNDVVWALE 801          
BLAST of CX289180 vs. ExPASy Swiss-Prot
Match: Y2899_ARATH (Probable leucine-rich repeat receptor-like protein kinase At2g28990 OS=Arabidopsis thaliana GN=At2g28990 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.255e-18
Identity = 55/133 (41.35%), Postives = 80/133 (60.15%), Query Frame = 1
Query:    1 DFGLSRLAPVPDIEGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMQPISHGK---NIVREVNIAYQSSMMFSVIDGNM-GSYPSECVEKFIKLALKCCQDETDARPSMSEVMRELE 387
            DFGLSR  P+ + +     +VSTVV GTPGYLDPEY+ T+ LT+KSD+YS G+V LE+++    I   +   +IV  V+       + S++D N+   Y    V K I+LA+ C    +  RP+MS V+ EL+
Sbjct:  720 DFGLSRSFPIGNEK-----NVSTVVAGTPGYLDPEYYQTNWLTEKSDIYSFGIVLLEIISNRPIIQQSREKPHIVEWVSFMITKGDLRSIMDPNLHQDYDIGSVWKAIELAMSCVSLSSARRPNMSRVVNELK 847          
BLAST of CX289180 vs. ExPASy Swiss-Prot
Match: Y2289_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At2g28960 OS=Arabidopsis thaliana GN=At2g28960 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.255e-18
Identity = 53/133 (39.85%), Postives = 75/133 (56.39%), Query Frame = 1
Query:    1 DFGLSRLAPVPDIEGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTG---MQPISHGKNIVREVNIAYQSSMMFSVIDGNMG-SYPSECVEKFIKLALKCCQDETDARPSMSEVMRELE 387
            DFGLSR  PV         HVST V GTPGYLDPEY+ T++L +KSDVYS G+V LE++T    +Q      +I   V        + +V+D  +   Y    V K +++A+ C    ++ RP+MS+V  EL+
Sbjct:  716 DFGLSRSFPVGG-----ETHVSTAVAGTPGYLDPEYYRTNRLNEKSDVYSFGIVLLEIITSRPVIQQTREKPHIAAWVGYMLTKGDIENVVDPRLNRDYEPTSVWKALEIAMSCVNPSSEKRPTMSQVTNELK 843          
BLAST of CX289180 vs. ExPASy Swiss-Prot
Match: Y1756_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g07560 OS=Arabidopsis thaliana GN=At1g07560 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.255e-18
Identity = 54/133 (40.60%), Postives = 79/133 (59.40%), Query Frame = 1
Query:    1 DFGLSRLAPVPDIEGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMQPISHGK---NIVREVNIAYQSSMMFSVIDGNM-GSYPSECVEKFIKLALKCCQDETDARPSMSEVMRELE 387
            DFGLSR  P+ D      +HVST+V GT GYLD EY+ T++L++KSDVYS GVV LE++T    I H +   +I   V +      + +++D  + G Y S    K ++LA+ C    +  RP+MS V+ EL+
Sbjct:  710 DFGLSRSFPIGD-----ESHVSTLVAGTFGYLDHEYYQTNRLSEKSDVYSFGVVLLEIITNKPVIDHNRDMPHIAEWVKLMLTRGDISNIMDPKLQGVYDSGSAWKALELAMTCVNPSSLKRPNMSHVVHELK 837          
The following BLAST results are available for this feature:
BLAST of CX289180 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 132
Match NameE-valueIdentityDescription
Y5241_ARATH5.021e-1939.07Probable receptor-like protein kinase At5g24010 OS... [more]
Y4245_ARATH6.558e-1941.35Probable LRR receptor-like serine/threonine-protei... [more]
Y5487_ARATH8.565e-1938.13Probable LRR receptor-like serine/threonine-protei... [more]
Y1518_ARATH8.565e-1942.42Probable LRR receptor-like serine/threonine-protei... [more]
Y5181_ARATH1.461e-1845.11Probable LRR receptor-like serine/threonine-protei... [more]
Y5596_ARATH1.908e-1839.85Probable LRR receptor-like serine/threonine-protei... [more]
Y5389_ARATH1.908e-1842.22Probable receptor-like protein kinase At5g38990 OS... [more]
Y2899_ARATH3.255e-1841.35Probable leucine-rich repeat receptor-like protein... [more]
Y2289_ARATH3.255e-1839.85Probable LRR receptor-like serine/threonine-protei... [more]
Y1756_ARATH3.255e-1840.60Probable LRR receptor-like serine/threonine-protei... [more]

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Properties
Property NameValue
Genbank descriptionC02010B02SK IF1 Citrus clementina cDNA clone C02010B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289180 ID=CX289180; Name=CX289180; organism=Citrus clementina; type=EST; length=617bp
GATTTTGGACTTTCACGACTTGCACCGGTTCCTGATATTGAAGGAATTGT
ACCAGCTCATGTATCCACAGTTGTCAAGGGGACTCCGGGTTATCTTGATC
CAGAGTACTTCTTAACTCATAAATTGACCGACAAGAGTGATGTGTATAGC
CTTGGAGTGGTATTTTTGGAACTCTTGACTGGTATGCAGCCAATCTCCCA
TGGCAAAAACATTGTTCGAGAGGTAAATATTGCGTATCAATCTAGTATGA
TGTTCTCAGTGATTGATGGGAATATGGGTTCTTATCCTTCGGAATGTGTG
GAGAAATTCATTAAACTGGCCTTGAAATGTTGTCAAGATGAGACAGATGC
AAGACCTTCAATGTCGGAGGTTATGAGAGAACTCGAGAGCATATGGAATA
TGATGCCGGAGTCTGATACAAAAACTCCTGAATTCATAAATAGTGAACAC
ACATCAAAGGAAGAAACTCCACCGTCTTCATCCTCAATGCTGAAGCACCC
ATATGTTTCATCAGATGTCTCTGGTAGCAATCTTGTTAGTGGAGTCATCC
CTACCATTACACCTAGATAAAATCCGAACTGAGAAAATTTTTTATTACTA
CTTTTGAGCAGGCAATG
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