CX289180

Overview
NameCX289180
Unique NameCX289180
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length617
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289180 vs. ExPASy Swiss-Prot
Match: BIK1_ARATH (Serine/threonine-protein kinase BIK1 OS=Arabidopsis thaliana GN=BIK1 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.414e-13
Identity = 49/155 (31.61%), Postives = 81/155 (52.26%), Query Frame = 1
Query:    1 DFGLSRLAPVPDIEGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMQPISHGKNIVREVNIAYQSSMMFS------VIDGNMGS-YPSECVEKFIKLALKCCQDETDARPSMSEVMRELESIWNMM-------PESDTK 423
            DFGL+R  P+ D+     ++VST V GT GY  PEY  +  L  +SDVYS GV+ LE+L+G + + H +    E  + +    + S      ++D  + + Y  E   +   +A++C   E  +RP+M +V+R L+ + + +       P  DTK
Sbjct:  220 DFGLARDGPMGDL-----SYVSTRVMGTYGYAAPEYMSSGHLNARSDVYSFGVLLLEILSGKRALDHNRPAKEENLVDWARPYLTSKRKVLLIVDNRLDTQYLPEEAVRMASVAVQCLSFEPKSRPTMDQVVRALQQLQDNLGKPSQTNPVKDTK 369          
BLAST of CX289180 vs. ExPASy Swiss-Prot
Match: SRF8_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 8 OS=Arabidopsis thaliana GN=SRF8 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.152e-13
Identity = 46/135 (34.07%), Postives = 74/135 (54.81%), Query Frame = 1
Query:    1 DFGLSRLAPVPDIEGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMQPISHGKNIVREVNIAYQSSMMFSV------IDGNM-GSYPSECVEKFIKLALKCCQDETDARPSMSEVMREL 384
            D GL+ L P  + +      VST V G+ GY  PE+ L+   T KSDVY+ GVV LELLTG +P+   +    +  + + +  +  +      +D ++ G YP++ + +F  +   C Q E + RP MSEV+++L
Sbjct:  541 DSGLAALTPNTERQ------VSTQVVGSFGYSAPEFALSGIYTVKSDVYTFGVVMLELLTGRKPLDSSRTRAEQSLVRWATPQLHDIDALSKMVDPSLNGMYPAKSLSRFADIIALCIQPEPEFRPPMSEVVQQL 669          
BLAST of CX289180 vs. ExPASy Swiss-Prot
Match: Y1154_ARATH (Probable serine/threonine-protein kinase At1g01540 OS=Arabidopsis thaliana GN=At1g01540 PE=1 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 4.117e-13
Identity = 42/136 (30.88%), Postives = 75/136 (55.15%), Query Frame = 1
Query:    1 DFGLSRLAPVPDIEGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMQPISHGK-----NIVREVNIAYQSSMMFSVIDGNMGSYP-SECVEKFIKLALKCCQDETDARPSMSEVMRELES 390
            DFGL++L       G   ++V+T V GT GY+ PEY  T  L +KSD+YS G++ +E++TG  P+ + +     N+V  +     +     V+D  +   P S+ +++ + +AL+C   + + RP M  ++  LE+
Sbjct:  298 DFGLAKLL------GSESSYVTTRVMGTFGYVAPEYACTGMLNEKSDIYSFGILIMEIITGRNPVDYSRPQGETNLVDWLKSMVGNRRSEEVVDPKIPEPPSSKALKRVLLVALRCVDPDANKRPKMGHIIHMLEA 427          
BLAST of CX289180 vs. ExPASy Swiss-Prot
Match: PUB33_ARATH (U-box domain-containing protein 33 OS=Arabidopsis thaliana GN=PUB33 PE=2 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 4.117e-13
Identity = 44/110 (40.00%), Postives = 62/110 (56.36%), Query Frame = 1
Query:   61 VSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMQPISHGKNIVREVNIAYQSSMMFSVIDGNMGSYPSECVEKFIKLALKCCQDETDARPSM-SEVMRELE 387
            V T V GT  YLDPE   + +LT KSDVYS G++ L LLTG   +     I  EV  A  +  +  ++D   G +P    E+  +LAL+CC+  ++ RP + +EV R LE
Sbjct:  636 VRTDVTGTVAYLDPEASSSGELTPKSDVYSFGIILLRLLTGRPAL----RISNEVKYALDNGTLNDLLDPLAGDWPFVQAEQLARLALRCCETVSENRPDLGTEVWRVLE 741          
BLAST of CX289180 vs. ExPASy Swiss-Prot
Match: EXS_ARATH (Leucine-rich repeat receptor protein kinase EXS OS=Arabidopsis thaliana GN=EXS PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 7.023e-13
Identity = 48/138 (34.78%), Postives = 73/138 (52.90%), Query Frame = 1
Query:    1 DFGLSRLAPVPDIEGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMQPI------SHGKNIVREVNIAYQSSMMFSVIDGNMGSYPSECVE-KFIKLALKCCQDETDARPSMSEVMRELESI 393
            DFGL+RL    +      +HVSTV+ GT GY+ PEY  + + T K DVYS GV+ LEL+TG +P       S G N+V              VID  + S   +  + + +++A+ C  +    RP+M +V++ L+ I
Sbjct: 1061 DFGLARLISACE------SHVSTVIAGTFGYIPPEYGQSARATTKGDVYSFGVILLELVTGKEPTGPDFKESEGGNLVGWAIQKINQGKAVDVIDPLLVSVALKNSQLRLLQIAMLCLAETPAKRPNMLDVLKALKEI 1192          
BLAST of CX289180 vs. ExPASy Swiss-Prot
Match: RPK1_ARATH (Probable LRR receptor-like serine/threonine-protein kinase RPK1 OS=Arabidopsis thaliana GN=RPK1 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 9.172e-13
Identity = 48/139 (34.53%), Postives = 75/139 (53.96%), Query Frame = 1
Query:    1 DFGLSRLAPVPDIEGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMQPI-------SHGKNIVREVNIAYQSSMMFSVI-DGNMGSYPSECVEKFIKLALKCCQDETDARPSMSEVMRELESI 393
            DFGLS+L       G   +HV+T V GT GY+ PEY +T ++++K+DVYS G+V LEL++  + +        +G NIV   ++         V   G   + P + + + + LALKC  D    RP+M + +R L+ I
Sbjct:  403 DFGLSKLL------GTSQSHVTTGVAGTFGYVAPEYAMTCRVSEKADVYSYGIVLLELISDKRALDPSFSSHENGFNIVSWAHMMLSQGKAKEVFTTGLWETGPPDDLVEVLHLALKCTVDSLSIRPTMKQAVRLLKRI 535          
BLAST of CX289180 vs. ExPASy Swiss-Prot
Match: RCH2_ARATH (Receptor-like protein kinase 2 OS=Arabidopsis thaliana GN=RCH2 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 9.172e-13
Identity = 51/138 (36.96%), Postives = 72/138 (52.17%), Query Frame = 1
Query:    1 DFGLSRLAPVPDIEGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMQPIS----HGKNIVREVNIAYQSSMMFSVIDGNMGSYPSECVEKFIKL---ALKCCQDETDARPSMSEVMRELESI 393
            DFGL++L    DI        S  V G+ GY+ PEY  + K+T+KSDVYS GVV LE+LTG QPI      G ++V  V    Q+     V+D  + S      ++ +++   AL C     D RP+M +V   L+ I
Sbjct:  937 DFGLAKLVDEGDI-----GRCSNTVAGSYGYIAPEYGYSMKITEKSDVYSYGVVVLEVLTGKQPIDPTVPEGIHLVDWVR---QNRGSLEVLDSTLRSRTEAEADEMMQVLGTALLCVNSSPDERPTMKDVAAMLKEI 1066          
BLAST of CX289180 vs. ExPASy Swiss-Prot
Match: PUB32_ARATH (U-box domain-containing protein 32 OS=Arabidopsis thaliana GN=PUB32 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 9.172e-13
Identity = 40/143 (27.97%), Postives = 83/143 (58.04%), Query Frame = 1
Query:    1 DFGLSRLAPVPDIEGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMQPISHGKNIVREVNIAYQSSMMFSVIDGNMGSYPSECVEKFIKLALKCCQDETDARPSMSEVMRELESI-WNMMPESDTKT 426
            D+G+S+L P+  ++   P            ++DP YF++ ++T +SD+Y+ G++ L+LLT  +P+S    I+R+V  A ++  + +V+D + G +P    +K   +A++CC+     RP ++ V+R ++ +    +P S+T +
Sbjct:  599 DYGISQLIPIDGLDKSDP------------HVDPHYFVSREMTLESDIYAFGIILLQLLT-RRPVS---GILRDVKCALENDNISAVLDNSAGDWPVARGKKLANVAIRCCKKNPMNRPDLAVVLRFIDRMKAPEVPSSETSS 725          
BLAST of CX289180 vs. ExPASy Swiss-Prot
Match: ACR4_ARATH (Serine/threonine-protein kinase-like protein ACR4 OS=Arabidopsis thaliana GN=ACR4 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 9.172e-13
Identity = 50/134 (37.31%), Postives = 74/134 (55.22%), Query Frame = 1
Query:    1 DFGLSRLAPVPDIEGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMQPIS---HGKNIVREVNIAYQSSMMFSVIDGNMGSYPS--ECVEKFIKLALKCCQDETDARPSMSEVMRELE 387
            DFGLS L PV        + ++ +  GT GYLDPEY+  H LT KSDVYS GV+ LE+L+G + I       NIV       ++  + +++D  +  +PS  E +++ + +A KC +     RPSM +V   LE
Sbjct:  659 DFGLSLLGPVDS-----GSPLAELPAGTLGYLDPEYYRLHYLTTKSDVYSFGVLLLEILSGRKAIDMHYEEGNIVEWAVPLIKAGDINALLDPVL-KHPSEIEALKRIVSVACKCVRMRGKDRPSMDKVTTALE 786          
BLAST of CX289180 vs. ExPASy Swiss-Prot
Match: RCH1_ARATH (LRR receptor-like serine/threonine-protein kinase RCH1 OS=Arabidopsis thaliana GN=RCH1 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.565e-12
Identity = 54/145 (37.24%), Postives = 74/145 (51.03%), Query Frame = 1
Query:    1 DFGLSRLAPVPDIEGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMQPIS----HGKNIVREVNIAYQSSMMFSVIDGNMGSYPSECVEKFIK---LALKCCQDETDARPSMSEVMRELESIWNMMPES 414
            DFGL++L    D      A  S  + G+ GY+ PEY  + K+T+KSDVYS GVV LE+LTG QPI      G +IV  V    +      VID  + + P   VE+ ++   +AL C     + RP+M +V   L  I     ES
Sbjct:  938 DFGLAKLVDDGDF-----ARSSNTIAGSYGYIAPEYGYSMKITEKSDVYSYGVVVLEVLTGKQPIDPTIPDGLHIVDWV----KKIRDIQVIDQGLQARPESEVEEMMQTLGVALLCINPIPEDRPTMKDVAAMLSEICQEREES 1073          
The following BLAST results are available for this feature:
BLAST of CX289180 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 132
Match NameE-valueIdentityDescription
BIK1_ARATH2.414e-1331.61Serine/threonine-protein kinase BIK1 OS=Arabidopsi... [more]
SRF8_ARATH3.152e-1334.07Protein STRUBBELIG-RECEPTOR FAMILY 8 OS=Arabidopsi... [more]
Y1154_ARATH4.117e-1330.88Probable serine/threonine-protein kinase At1g01540... [more]
PUB33_ARATH4.117e-1340.00U-box domain-containing protein 33 OS=Arabidopsis ... [more]
EXS_ARATH7.023e-1334.78Leucine-rich repeat receptor protein kinase EXS OS... [more]
RPK1_ARATH9.172e-1334.53Probable LRR receptor-like serine/threonine-protei... [more]
RCH2_ARATH9.172e-1336.96Receptor-like protein kinase 2 OS=Arabidopsis thal... [more]
PUB32_ARATH9.172e-1327.97U-box domain-containing protein 32 OS=Arabidopsis ... [more]
ACR4_ARATH9.172e-1337.31Serine/threonine-protein kinase-like protein ACR4 ... [more]
RCH1_ARATH1.565e-1237.24LRR receptor-like serine/threonine-protein kinase ... [more]

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Properties
Property NameValue
Genbank descriptionC02010B02SK IF1 Citrus clementina cDNA clone C02010B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289180 ID=CX289180; Name=CX289180; organism=Citrus clementina; type=EST; length=617bp
GATTTTGGACTTTCACGACTTGCACCGGTTCCTGATATTGAAGGAATTGT
ACCAGCTCATGTATCCACAGTTGTCAAGGGGACTCCGGGTTATCTTGATC
CAGAGTACTTCTTAACTCATAAATTGACCGACAAGAGTGATGTGTATAGC
CTTGGAGTGGTATTTTTGGAACTCTTGACTGGTATGCAGCCAATCTCCCA
TGGCAAAAACATTGTTCGAGAGGTAAATATTGCGTATCAATCTAGTATGA
TGTTCTCAGTGATTGATGGGAATATGGGTTCTTATCCTTCGGAATGTGTG
GAGAAATTCATTAAACTGGCCTTGAAATGTTGTCAAGATGAGACAGATGC
AAGACCTTCAATGTCGGAGGTTATGAGAGAACTCGAGAGCATATGGAATA
TGATGCCGGAGTCTGATACAAAAACTCCTGAATTCATAAATAGTGAACAC
ACATCAAAGGAAGAAACTCCACCGTCTTCATCCTCAATGCTGAAGCACCC
ATATGTTTCATCAGATGTCTCTGGTAGCAATCTTGTTAGTGGAGTCATCC
CTACCATTACACCTAGATAAAATCCGAACTGAGAAAATTTTTTATTACTA
CTTTTGAGCAGGCAATG
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