CX289180

Overview
NameCX289180
Unique NameCX289180
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length617
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289180 vs. ExPASy Swiss-Prot
Match: SERK1_ARATH (Somatic embryogenesis receptor kinase 1 OS=Arabidopsis thaliana GN=SERK1 PE=1 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 2.669e-12
Identity = 45/137 (32.85%), Postives = 74/137 (54.01%), Query Frame = 1
Query:    1 DFGLSRLAPVPDIEGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMQPISHGK-------NIVREVNIAYQSSMMFSVIDGNM-GSYPSECVEKFIKLALKCCQDETDARPSMSEVMRELE 387
            DFGL++L    D       HV+T V+GT G++ PEY  T K ++K+DV+  G++ LEL+TG +     +        ++  V    +   +  ++D ++  +Y    +E+ I++AL C Q     RP MSEV+R LE
Sbjct:  447 DFGLAKLMDYKD------THVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGIMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKEKKLEMLVDPDLQTNYEERELEQVIQVALLCTQGSPMERPKMSEVVRMLE 577          
BLAST of CX289180 vs. ExPASy Swiss-Prot
Match: Y5005_ARATH (Probable receptor-like protein kinase At5g20050 OS=Arabidopsis thaliana GN=At5g20050 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.485e-12
Identity = 51/154 (33.12%), Postives = 78/154 (50.65%), Query Frame = 1
Query:    1 DFGLSRLAPVPDIEGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMQPISHG----------KNIVREVNIAYQSSMMFSVIDGNM---GSYPSECVEKFIKLALKCCQDETDARPSMSEVMRELES--IWNMMPESD 417
            DFGLS+L    +      + V T ++GT GYL PE+ L H +++KSDVYS G+V LE++ G + IS            +   R VN   +   +  ++D  +        E V K + +AL C Q+++  RP M+ V+  LE     N  P+SD
Sbjct:  254 DFGLSKLIARDE------SRVLTDIRGTRGYLAPEWLLEHGISEKSDVYSYGIVLLEMIGGRRSISRVEVKETKKKKLEYFPRIVNQKMRERKIMEIVDQRLIEVNEVDEEEVMKLVCVALWCIQEKSKKRPDMTMVIEMLEGRVPVNEPPDSD 401          
BLAST of CX289180 vs. ExPASy Swiss-Prot
Match: WAKLF_ARATH (Wall-associated receptor kinase-like 6 OS=Arabidopsis thaliana GN=WAKL6 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.485e-12
Identity = 36/66 (54.55%), Postives = 46/66 (69.70%), Query Frame = 1
Query:    1 DFGLSRLAPVPDIEGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMQPIS 198
            DFG SR         I   H++T+V GT GY+DPEYFL+ + TDKSDVYS GVV +EL+TG +P+S
Sbjct:  577 DFGTSRSIT------IAQTHLTTLVAGTFGYMDPEYFLSSQYTDKSDVYSFGVVLVELITGEKPLS 636          
BLAST of CX289180 vs. ExPASy Swiss-Prot
Match: RPK2_ARATH (LRR receptor-like serine/threonine-protein kinase RPK2 OS=Arabidopsis thaliana GN=RPK2 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.485e-12
Identity = 48/139 (34.53%), Postives = 73/139 (52.52%), Query Frame = 1
Query:    1 DFGLSRLAPVPDIEGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMQPI-------SHGKNIVR-EVNIAYQSSMMFSVIDGNMGSYPSECVEKFIKLALKCCQDETDARPSMSEVMRELESI 393
            DFGL+RL       G    H +T V GT GY+ PEY +T +++DK+DVYS GVV LELL+  + +        +G NIV+    +  Q         G   + P + + + + LA+ C  D    RP+M +V+R L+ +
Sbjct: 1014 DFGLARLL------GTSETHATTGVAGTFGYVAPEYAMTCRVSDKADVYSYGVVLLELLSDKKALDPSFVSYGNGFNIVQWACMLLRQGRAKEFFTAGLWDAGPHDDLVEVLHLAVVCTVDSLSTRPTMKQVVRRLKQL 1146          
BLAST of CX289180 vs. ExPASy Swiss-Prot
Match: Y5343_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g53430 OS=Arabidopsis thaliana GN=At1g53430 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.945e-12
Identity = 48/142 (33.80%), Postives = 76/142 (53.52%), Query Frame = 1
Query:    1 DFGLSRLAPVPDIEGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMQPISH--GKNIVREVNIAY---QSSMMFSVIDGNMG-SYPSECVEKFIKLALKCCQDETDARPSMSEVMRELESIWNMMP 408
            DFGL++L    D E     H+ST + GT GY+ PEY +   LTDK+DVYS GVV LE+++G    ++   +  V  ++ AY   +   +  ++D ++G S+  +   + + +AL C       RP MS V+  LE    + P
Sbjct:  813 DFGLAKLN---DDEN---THISTRIAGTIGYMAPEYAMRGYLTDKADVYSFGVVCLEIVSGKSNTNYRPKEEFVYLLDWAYVLQEQGSLLELVDPDLGTSFSKKEAMRMLNIALLCTNPSPTLRPPMSSVVSMLEGKIKVQP 948          
BLAST of CX289180 vs. ExPASy Swiss-Prot
Match: RLK5_ARATH (Receptor-like protein kinase 5 OS=Arabidopsis thaliana GN=RLK5 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.945e-12
Identity = 47/145 (32.41%), Postives = 72/145 (49.66%), Query Frame = 1
Query:    1 DFGLSRLAPVPDIEGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMQPISH---GKNIVREVNIAYQSSMMFSVIDGNMGSYPSECVEKFIKLALKCCQDETDARPSMSEVMRELESIWNMMPESDTKT 426
            DFG+++   V  + G       + + G+ GY+ PEY  T ++ +KSD+YS GVV LEL+TG QP       K++ + V  A     +  VID  +     E + K I + L C       RPSM +V+  L+ +   +P S   T
Sbjct:  837 DFGIAK---VGQMSGSKTPEAMSGIAGSCGYIAPEYVYTLRVNEKSDIYSFGVVLLELVTGKQPTDSELGDKDMAKWVCTALDKCGLEPVIDPKLDLKFKEEISKVIHIGLLCTSPLPLNRPSMRKVVIMLQEVSGAVPCSSPNT 978          
BLAST of CX289180 vs. ExPASy Swiss-Prot
Match: HSL1_ARATH (Receptor-like protein kinase HSL1 OS=Arabidopsis thaliana GN=HSL1 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.945e-12
Identity = 45/134 (33.58%), Postives = 72/134 (53.73%), Query Frame = 1
Query:    1 DFGLSRLAPVPDIEGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMQPIS---HGKNIVREVNIAYQSSMMFSVIDGNMGSYPSECVEKFIKLALKCCQDETDARPSMSEVMRELESI 393
            DFG+++     D+ G  P  +S V+ G+ GY+ PEY  T ++ +KSD+YS GVV LE++T  +P+      K++V+ V        +  VID  + S   E + K + + L C       RPSM  V++ L+ I
Sbjct:  833 DFGVAKAV---DLTGKAPKSMS-VIAGSCGYIAPEYAYTLRVNEKSDIYSFGVVILEIVTRKRPVDPELGEKDLVKWVCSTLDQKGIEHVIDPKLDSCFKEEISKILNVGLLCTSPLPINRPSMRRVVKMLQEI 962          
BLAST of CX289180 vs. ExPASy Swiss-Prot
Match: CX32_ARATH (Probable serine/threonine-protein kinase Cx32, chloroplastic OS=Arabidopsis thaliana GN=At4g35600 PE=1 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 5.945e-12
Identity = 49/151 (32.45%), Postives = 78/151 (51.66%), Query Frame = 1
Query:    1 DFGLSRLAPVPDIEGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMQPISHGKNIVREVNIAY------QSSMMFSVID-GNMGSYPSECVEKFIKLALKCCQDETDARPSMSEVMRELESI--WNMMP-ESDTK 423
            DFGL++L P  +      +HV+T + GT GY  PEY  T  L  KSDV++ GVV LE++TG+   +  +   +E  + +          +  ++D G  G Y ++   +  ++ L C + +   RP M EV+  LE I   N++P  S TK
Sbjct:  236 DFGLAKLGPADE-----KSHVTTRIMGTYGYAAPEYMATGHLYVKSDVFAFGVVLLEIMTGLTAHNTKRPRGQESLVDWLRPELSNKHRVKQIMDKGIKGQYTTKVATEMARITLSCIEPDPKNRPHMKEVVEVLEHIQGLNVVPNRSSTK 381          
BLAST of CX289180 vs. ExPASy Swiss-Prot
Match: Y5707_ARATH (Probable receptor-like protein kinase At5g47070 OS=Arabidopsis thaliana GN=At5g47070 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 7.765e-12
Identity = 53/148 (35.81%), Postives = 71/148 (47.97%), Query Frame = 1
Query:    1 DFGLSRLAPVPDIEGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMQPISHGKNIVRE-----VNIAYQSSMMFS-VIDGNM-GSYPSECVEKFIKLALKCCQDETDARPSMSEVMRELESIWNMMPESDTK 423
            DFGL+R  P  D       HV+T   GT GY  PEY  T  L  KSDVYS GVV  E++TG + I   K +        V      S  FS ++D  +  +YP+       KLA  C +     RP+M  V+  L+ I   + ESD++
Sbjct:  236 DFGLAREGPDGD-----NTHVTTARVGTHGYAAPEYVQTGHLRLKSDVYSFGVVLYEIITGRRTIERNKPVAERRLLDWVKEYPADSQRFSMIVDPRLRNNYPAAGARSLAKLADLCLKKNDKERPTMEIVVERLKKI---IEESDSE 375          
BLAST of CX289180 vs. ExPASy Swiss-Prot
Match: CRK2_ARATH (Cysteine-rich receptor-like protein kinase 2 OS=Arabidopsis thaliana GN=CRK2 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.014e-11
Identity = 45/148 (30.41%), Postives = 76/148 (51.35%), Query Frame = 1
Query:    1 DFGLSRLAPVPDIEGIVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMQPI-----SHGKNIVREVNIAYQSSMMFSVIDGNM---GSYPSECVEK----FIKLALKCCQDETDARPSMSEVMRELESIWNMMP 408
            DFGL+R            +H+ST + GT GY+ PEY    +LT+  DVYS GV+ LE++TG Q        +  +++ E    +QS  +  + D N+     Y S  ++K     +++ L C Q+    RP MS+++  L++   ++P
Sbjct:  468 DFGLARSFQDDK------SHISTAIAGTLGYMAPEYLAHGQLTEMVDVYSFGVLVLEIVTGKQNTKSKMSDYSDSLITEAWKHFQSGELEKIYDPNLDWKSQYDSHIIKKEIARVVQIGLLCTQEIPSLRPPMSKLLHMLKNKEEVLP 609          
The following BLAST results are available for this feature:
BLAST of CX289180 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 132
Match NameE-valueIdentityDescription
SERK1_ARATH2.669e-1232.85Somatic embryogenesis receptor kinase 1 OS=Arabido... [more]
Y5005_ARATH3.485e-1233.12Probable receptor-like protein kinase At5g20050 OS... [more]
WAKLF_ARATH3.485e-1254.55Wall-associated receptor kinase-like 6 OS=Arabidop... [more]
RPK2_ARATH3.485e-1234.53LRR receptor-like serine/threonine-protein kinase ... [more]
Y5343_ARATH5.945e-1233.80Probable LRR receptor-like serine/threonine-protei... [more]
RLK5_ARATH5.945e-1232.41Receptor-like protein kinase 5 OS=Arabidopsis thal... [more]
HSL1_ARATH5.945e-1233.58Receptor-like protein kinase HSL1 OS=Arabidopsis t... [more]
CX32_ARATH5.945e-1232.45Probable serine/threonine-protein kinase Cx32, chl... [more]
Y5707_ARATH7.765e-1235.81Probable receptor-like protein kinase At5g47070 OS... [more]
CRK2_ARATH1.014e-1130.41Cysteine-rich receptor-like protein kinase 2 OS=Ar... [more]

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Properties
Property NameValue
Genbank descriptionC02010B02SK IF1 Citrus clementina cDNA clone C02010B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289180 ID=CX289180; Name=CX289180; organism=Citrus clementina; type=EST; length=617bp
GATTTTGGACTTTCACGACTTGCACCGGTTCCTGATATTGAAGGAATTGT
ACCAGCTCATGTATCCACAGTTGTCAAGGGGACTCCGGGTTATCTTGATC
CAGAGTACTTCTTAACTCATAAATTGACCGACAAGAGTGATGTGTATAGC
CTTGGAGTGGTATTTTTGGAACTCTTGACTGGTATGCAGCCAATCTCCCA
TGGCAAAAACATTGTTCGAGAGGTAAATATTGCGTATCAATCTAGTATGA
TGTTCTCAGTGATTGATGGGAATATGGGTTCTTATCCTTCGGAATGTGTG
GAGAAATTCATTAAACTGGCCTTGAAATGTTGTCAAGATGAGACAGATGC
AAGACCTTCAATGTCGGAGGTTATGAGAGAACTCGAGAGCATATGGAATA
TGATGCCGGAGTCTGATACAAAAACTCCTGAATTCATAAATAGTGAACAC
ACATCAAAGGAAGAAACTCCACCGTCTTCATCCTCAATGCTGAAGCACCC
ATATGTTTCATCAGATGTCTCTGGTAGCAATCTTGTTAGTGGAGTCATCC
CTACCATTACACCTAGATAAAATCCGAACTGAGAAAATTTTTTATTACTA
CTTTTGAGCAGGCAATG
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