CX289183

Overview
NameCX289183
Unique NameCX289183
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length526
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289183 vs. ExPASy Swiss-Prot
Match: NOG2_SCHPO (Nucleolar GTP-binding protein 2 OS=Schizosaccharomyces pombe GN=nog2 PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 2.339e-18
Identity = 45/127 (35.43%), Postives = 74/127 (58.27%), Query Frame = 2
Query:    2 NVGATPGLTRSMQEVQLDKNVKLLDCPGVVMLKSGENDASIALRNCKRIEKLDDPVGPVKEILNRCPANLLISLYKLPSFDSVDDFLQKVATVRGKLKKGGIVDVEAAARIILHDWNEGKIPYYTMP 382
            NV   PG T+  Q V L K + L+DCPG+V   S ++DA + L+   R+E + +P   +  +L+RC    L   Y++  ++   +FL K+A   G+L KGG  D  + A+++L+D+  GKIP++  P
Sbjct:  337 NVAPIPGETKVWQYVALMKRIFLIDCPGIVPPSSNDSDAELLLKGVVRVENVSNPEAYIPTVLSRCKVKHLERTYEISGWNDSTEFLAKLAKKGGRLLKGGEPDEASVAKMVLNDFMRGKIPWFIGP 463          
BLAST of CX289183 vs. ExPASy Swiss-Prot
Match: NOG2_YARLI (Nucleolar GTP-binding protein 2 OS=Yarrowia lipolytica GN=NOG2 PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 8.887e-18
Identity = 43/123 (34.96%), Postives = 69/123 (56.10%), Query Frame = 2
Query:   17 PGLTRSMQEVQLDKNVKLLDCPGVVMLKSGENDASIALRNCKRIEKLDDPVGPVKEILNRCPANLLISLYKLPSFDSVDDFLQKVATVRGKLKKGGIVDVEAAARIILHDWNEGKIPYYTMPP 385
            PG T+  Q + L K + L+DCPG+V     +++  I  R   R+E +  P   +  +L RC    L   Y++  + +  +FL+K+A   G+L KGG  D    A++IL+D+N GKIP++  PP
Sbjct:  339 PGETKVWQYITLMKRIFLIDCPGIVPPSQKDSETDILFRGVVRVEHVSYPEQYIPALLERCETKHLERTYEVSGWSNATEFLEKIARKHGRLLKGGEPDESGIAKLILNDFNRGKIPWFVPPP 461          
BLAST of CX289183 vs. ExPASy Swiss-Prot
Match: NOG2_KLULA (Nucleolar GTP-binding protein 2 OS=Kluyveromyces lactis GN=NOG2 PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 8.887e-18
Identity = 45/131 (34.35%), Postives = 72/131 (54.96%), Query Frame = 2
Query:    5 VGATPGLTRSMQEVQLDKNVKLLDCPGVVMLKSGENDASIALRNCKRIEKLDDPVGPVKEILNRCPANLLISLYKLPSFDSVDDFLQKVATVRGKLKKGGIVDVEAAARIILHDWNEGKIPYYTMPPARDQ 397
            V   PG T+  Q + L K + L+DCPG+V   S +++  I  R   R+E +  P   +  IL RC    L   Y++  +    DF++ +A  +G+L KGG  D    ++ IL+D+N GKIP++  PP +D+
Sbjct:  342 VAPIPGETKVWQYITLMKRIFLIDCPGIVPPSSKDSEEDILFRGVVRVEHVSHPEQYIPGILKRCKRQHLERTYEISGWKDSVDFIEMIARKQGRLLKGGEPDESGVSKQILNDFNRGKIPWFVPPPEKDK 472          
BLAST of CX289183 vs. ExPASy Swiss-Prot
Match: NOG2_CANGA (Nucleolar GTP-binding protein 2 OS=Candida glabrata GN=NOG2 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.161e-17
Identity = 42/131 (32.06%), Postives = 73/131 (55.73%), Query Frame = 2
Query:    5 VGATPGLTRSMQEVQLDKNVKLLDCPGVVMLKSGENDASIALRNCKRIEKLDDPVGPVKEILNRCPANLLISLYKLPSFDSVDDFLQKVATVRGKLKKGGIVDVEAAARIILHDWNEGKIPYYTMPPARDQ 397
            V   PG T+  Q + L K + L+DCPG+V   + +++  I  R   R+E +  P   +  +L RC    L   Y++  +    DF++ +A  +G+L KGG  D    ++ IL+D+N GKIP++ +PP +++
Sbjct:  343 VAPIPGETKVWQYITLMKRIFLIDCPGIVPPSTKDSEEDILFRGVVRVEHVSHPEQYIPGVLKRCQTKHLERTYEISGWKDATDFIEMLARKQGRLLKGGEPDESGVSKQILNDFNRGKIPWFVIPPEKEE 473          
BLAST of CX289183 vs. ExPASy Swiss-Prot
Match: GNL3_HUMAN (Guanine nucleotide-binding protein-like 3 OS=Homo sapiens GN=GNL3 PE=1 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 1.516e-17
Identity = 55/166 (33.13%), Postives = 89/166 (53.61%), Query Frame = 2
Query:    2 NVGATPGLTRSMQEVQLDKNVKLLDCPGVVMLKSGENDASIALRNCKRIEKLDDPVGPVKEILNRCPANLLISLYKLPSFDSVDDFLQKVATVRGKLKKGGIVDVEAAARIILHDWNEGKIPYYTMPPARDQGIP-SEARIVSELGKEFNVNEVYKNESSFIGSLK 496
            NVG + GLTRSMQ V LDK + ++D P  ++     + A +ALR+   IE +  P+     IL++  A  ++  Y +P + +  +F   +A  RG  +KGGI +VE AA+++  +W    + YY  PP      P     IV ++   FN+ E+ KN +  I ++K
Sbjct:  281 NVGVSMGLTRSMQVVPLDKQITIIDSPSFIVSPLNSSSA-LALRSPASIEVVK-PMEAASAILSQADARQVVLKYTVPGYRNSLEFFTVLAQRRGMHQKGGIPNVEGAAKLLWSEWTGASLAYYCHPPTSWTPPPYFNESIVVDMKSGFNLEELEKNNAQSIRAIK 444          
BLAST of CX289183 vs. ExPASy Swiss-Prot
Match: NOG2_CRYGA (Nucleolar GTP-binding protein 2 OS=Cryptococcus gattii GN=NOG2 PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.980e-17
Identity = 56/197 (28.43%), Postives = 90/197 (45.69%), Query Frame = 2
Query:    5 VGATPGLTRSMQEVQLDKNVKLLDCPGVVMLKSGENDASIALRNCKRIEKLDDPVGPVKEILNRCPANLLISLYKLPSFDS-------VDDFLQKVATVRGKLKKGGIVDVEAAARIILHDWNEGKIPYYTMPPARDQ-GIPSEARIVS----------------ELGKEFNVNEVYKNESSFIGSLKSVDDFQPVE 523
            V   PG T+  Q + L + + L+DCPG+V + + ++D    L+   R+E L  P   +  +L R     L   Y L   +            L  +A   GKL KGG  D EAAA+++L+DW  GKIP++  PPA+ + G P+ A   +                EL +E    E+ + +   +G +  +   + VE
Sbjct:  366 VAPIPGETKVWQYITLMRRIYLIDCPGIVPVSAKDSDTDTVLKGVVRVENLATPAEHIPALLERVRPEYLERTYNLEHVEGGWHGEQGATVILTAIAKKSGKLLKGGEPDQEAAAKMVLNDWIRGKIPFFVAPPAKSEPGAPTAATAAAATTTEAEKKKTEAEEQELAEERETMEILEEQERSLGKVLGIKRVKGVE 562          
BLAST of CX289183 vs. ExPASy Swiss-Prot
Match: NOG2_ASHGO (Nucleolar GTP-binding protein 2 OS=Ashbya gossypii GN=NOG2 PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.980e-17
Identity = 43/130 (33.08%), Postives = 71/130 (54.62%), Query Frame = 2
Query:    5 VGATPGLTRSMQEVQLDKNVKLLDCPGVVMLKSGENDASIALRNCKRIEKLDDPVGPVKEILNRCPANLLISLYKLPSFDSVDDFLQKVATVRGKLKKGGIVDVEAAARIILHDWNEGKIPYYTMPPARD 394
            V   PG T+  Q + L K + L+DCPG+V   + + +  I  R   R+E +  P   +  +L RC  + L   Y++  +    +F++ +A  +G+L KGG  D    A+ +L+D+N GKIP++  PP RD
Sbjct:  342 VAPIPGETKVWQYITLMKRIFLIDCPGIVPPSAKDTEEDILFRGVVRVEHVSHPEQYIPAVLRRCKRHHLERTYEISGWADATEFIEMLARKQGRLLKGGEPDETGVAKQVLNDFNRGKIPWFVSPPDRD 471          
BLAST of CX289183 vs. ExPASy Swiss-Prot
Match: GNL3_MOUSE (Guanine nucleotide-binding protein-like 3 OS=Mus musculus GN=Gnl3 PE=1 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 1.980e-17
Identity = 55/166 (33.13%), Postives = 90/166 (54.22%), Query Frame = 2
Query:    2 NVGATPGLTRSMQEVQLDKNVKLLDCPGVVMLKSGENDASIALRNCKRIEKLDDPVGPVKEILNRCPANLLISLYKLPSFDSVDDFLQKVATVRGKLKKGGIVDVEAAARIILHDWNEGKIPYYTMPPAR-DQGIPSEARIVSELGKEFNVNEVYKNESSFIGSLK 496
            NVG + GLTRSMQ V LDK + ++D P ++ +    +  ++ALR+   IE+L  P+     IL++     ++  Y +P +     F  K+A  RG  +KGG  +VE+AA+++  +W    + YY  PPA  +  +     I + + K FN+ E+ KN +  I  LK
Sbjct:  276 NVGISMGLTRSMQIVPLDKQITIIDSPCLI-ISPCNSPTALALRSPASIEELR-PLEAASAILSQADNEQVVLKYTVPEYKDSLHFFTKLAQRRGLHQKGGSPNVESAAKLVWSEWTGASLGYYCHPPASWNHSLHFNENIAAVMKKGFNLEELEKNNAHSIQVLK 439          
BLAST of CX289183 vs. ExPASy Swiss-Prot
Match: GNL3_RAT (Guanine nucleotide-binding protein-like 3 OS=Rattus norvegicus GN=Gnl3 PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 2.586e-17
Identity = 56/166 (33.73%), Postives = 90/166 (54.22%), Query Frame = 2
Query:    2 NVGATPGLTRSMQEVQLDKNVKLLDCPGVVMLKSGENDASIALRNCKRIEKLDDPVGPVKEILNRCPANLLISLYKLPSFDSVDDFLQKVATVRGKLKKGGIVDVEAAARIILHDWNEGKIPYYTMPPARDQGIPS-EARIVSELGKEFNVNEVYKNESSFIGSLK 496
            +VG + GLTRSMQ V LDK + ++D P  + +    + A++ALR+   IE L  P+     IL++  +  ++  Y +P +    DF  K+A  RG  +KGG  +VE+AA+++  +W    + YY  PPA     P     I + + + FN+ E+ KN +  I  LK
Sbjct:  276 SVGVSMGLTRSMQIVPLDKQITIIDSPCFI-ISPCNSPAALALRSPASIEVLR-PLEAASAILSQADSQQVVLKYTVPGYKDSLDFFTKLAQRRGLHQKGGSPNVESAAKLLWSEWTGASLGYYCHPPASWNHSPHFNENITAIMKRGFNLEELEKNNAHSIQVLK 439          
BLAST of CX289183 vs. ExPASy Swiss-Prot
Match: NOG2_YEAST (Nucleolar GTP-binding protein 2 OS=Saccharomyces cerevisiae GN=NOG2 PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 4.411e-17
Identity = 42/130 (32.31%), Postives = 72/130 (55.38%), Query Frame = 2
Query:    5 VGATPGLTRSMQEVQLDKNVKLLDCPGVVMLKSGENDASIALRNCKRIEKLDDPVGPVKEILNRCPANLLISLYKLPSFDSVDDFLQKVATVRGKLKKGGIVDVEAAARIILHDWNEGKIPYYTMPPARD 394
            V   PG T+  Q + L K + L+DCPG+V   S +++  I  R   R+E +  P   +  +L RC    L   Y++  +    +F++ +A  +G+L KGG  D    ++ IL+D+N GKIP++ +PP ++
Sbjct:  343 VAPIPGETKVWQYITLMKRIFLIDCPGIVPPSSKDSEEDILFRGVVRVEHVTHPEQYIPGVLKRCQVKHLERTYEISGWKDATEFIEILARKQGRLLKGGEPDESGVSKQILNDFNRGKIPWFVLPPEKE 472          
The following BLAST results are available for this feature:
BLAST of CX289183 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
NOG2_SCHPO2.339e-1835.43Nucleolar GTP-binding protein 2 OS=Schizosaccharom... [more]
NOG2_YARLI8.887e-1834.96Nucleolar GTP-binding protein 2 OS=Yarrowia lipoly... [more]
NOG2_KLULA8.887e-1834.35Nucleolar GTP-binding protein 2 OS=Kluyveromyces l... [more]
NOG2_CANGA1.161e-1732.06Nucleolar GTP-binding protein 2 OS=Candida glabrat... [more]
GNL3_HUMAN1.516e-1733.13Guanine nucleotide-binding protein-like 3 OS=Homo ... [more]
NOG2_CRYGA1.980e-1728.43Nucleolar GTP-binding protein 2 OS=Cryptococcus ga... [more]
NOG2_ASHGO1.980e-1733.08Nucleolar GTP-binding protein 2 OS=Ashbya gossypii... [more]
GNL3_MOUSE1.980e-1733.13Guanine nucleotide-binding protein-like 3 OS=Mus m... [more]
GNL3_RAT2.586e-1733.73Guanine nucleotide-binding protein-like 3 OS=Rattu... [more]
NOG2_YEAST4.411e-1732.31Nucleolar GTP-binding protein 2 OS=Saccharomyces c... [more]

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Properties
Property NameValue
Genbank descriptionC02010B06SK IF1 Citrus clementina cDNA clone C02010B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289183 ID=CX289183; Name=CX289183; organism=Citrus clementina; type=EST; length=526bp
AAATGTTGGGGCTACTCCTGGGTTAACCAGGTCAATGCAGGAAGTTCAGT
TAGACAAGAATGTTAAATTGTTGGACTGCCCTGGTGTTGTAATGCTTAAA
TCTGGAGAAAATGATGCATCTATAGCTCTTAGAAACTGCAAAAGGATTGA
AAAATTAGATGATCCTGTTGGTCCTGTGAAGGAAATTCTCAACCGTTGCC
CTGCCAATCTGTTGATATCACTATACAAGCTCCCCAGCTTTGATTCAGTT
GATGACTTCCTGCAGAAGGTGGCTACTGTCAGGGGTAAGCTTAAAAAGGG
TGGTATTGTGGATGTTGAAGCTGCTGCAAGGATTATTCTGCACGACTGGA
ATGAGGGTAAAATTCCATATTACACTATGCCTCCGGCTAGGGATCAAGGA
ATTCCTTCAGAGGCAAGGATAGTTTCAGAGTTAGGAAAGGAATTTAATGT
TAATGAGGTTTATAAGAACGAATCTTCATTCATTGGAAGCCTCAAGTCTG
TTGACGACTTTCAACCTGTTGAAGTT
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