CX289183

Overview
NameCX289183
Unique NameCX289183
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length526
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289183 vs. ExPASy Swiss-Prot
Match: NOG2_NEUCR (Nucleolar GTP-binding protein 2 OS=Neurospora crassa GN=nog-2 PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 5.760e-17
Identity = 43/132 (32.58%), Postives = 74/132 (56.06%), Query Frame = 2
Query:    5 VGATPGLTRSMQEVQLDKNVKLLDCPGVVMLKSGENDASIALRNCKRIEKLDDPVGPVKEILNRCPANLLISLYKLPSFDSVDDFLQKVATVRGKLKKGGIVDVEAAARIILHDWNEGKIPYYTMPPARDQG 400
            V   PG T+  Q V L + + L+DCPG+V     +    + LR   R+E +D+P   +  +LN+   + +   Y+L  +     FL+ +A   G+L KGG  DV+  A+++L+D+  GKIP++T  P +++G
Sbjct:  353 VAPIPGETKVWQYVTLMRRIYLIDCPGIVPPNQNDTPQDLLLRGVVRVENVDNPEQYIPAVLNKVKPHHMERTYELKGWKDHIHFLEMLARKGGRLLKGGEPDVDGVAKMVLNDFMRGKIPWFTPAPEKEEG 484          
BLAST of CX289183 vs. ExPASy Swiss-Prot
Match: NOG2_CRYNV (Nucleolar GTP-binding protein 2 OS=Cryptococcus neoformans var. grubii GN=NOG2 PE=3 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 2.859e-16
Identity = 53/192 (27.60%), Postives = 89/192 (46.35%), Query Frame = 2
Query:    5 VGATPGLTRSMQEVQLDKNVKLLDCPGVVMLKSGENDASIALRNCKRIEKLDDPVGPVKEILNRCPANLLISLYKLPSFDS-------VDDFLQKVATVRGKLKKGGIVDVEAAARIILHDWNEGKIPYYTMPPARDQGIPSEARIVS------------ELGKEFNVNEVYKNESSFIGSLKSVDDFQPVE 523
            V   PG T+  Q + L + + L+DCPG+V + + ++D    L+   R+E L  P   +  +L R     L   Y L   +            L  +A   GKL KGG  D EAAA+++L+DW  GK+P++  PP + +   ++A + S            EL +E    E+ + +   +G +  +   + VE
Sbjct:  356 VAPIPGETKVWQYITLMRRIYLIDCPGIVPVSAKDSDTDTVLKGVVRVENLATPAEHIPALLERVRPEYLERTYGLEHVEGGWHGEEGATFVLTAIAKKSGKLLKGGEPDQEAAAKMVLNDWIRGKVPFFVAPPTKPES-GADAHVSSATTEKVQEQEQKELAEEKETKEMLEEQERSLGKVLGIKRVKGVE 546          
BLAST of CX289183 vs. ExPASy Swiss-Prot
Match: NOG2_PNECA (Nucleolar GTP-binding protein 2 OS=Pneumocystis carinii GN=NOG2 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.086e-15
Identity = 41/128 (32.03%), Postives = 73/128 (57.03%), Query Frame = 2
Query:    2 NVGATPGLTRSMQEVQLDKNVKLLDCPGVVMLKSGENDASIALRNCKRIEKLDDPVGPVKEILNRCPANLLISLYKLPSFDS-VDDFLQKVATVRGKLKKGGIVDVEAAARIILHDWNEGKIPYYTMP 382
            N    PG T+  Q V++   + ++DCPG+V   S +++  I ++   RIEK+ +P   +  ILN C    L   Y++  +++    F++ +A   GKL KGG VD  + A+++++D+  GKIP++  P
Sbjct:  319 NTAPIPGETKVWQYVRMTSKIFMIDCPGIVPPNSNDSETEIIIKGALRIEKVSNPEQYIHAILNLCETKHLERTYQISGWENDSTKFIELLARKTGKLLKGGEVDESSIAKMVINDFIRGKIPWFIAP 446          
BLAST of CX289183 vs. ExPASy Swiss-Prot
Match: GNL3_XENTR (Guanine nucleotide-binding protein-like 3 OS=Xenopus tropicalis GN=gnl3 PE=2 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 3.161e-15
Identity = 46/128 (35.94%), Postives = 70/128 (54.69%), Query Frame = 2
Query:    2 NVGATPGLTRSMQEVQLDKNVKLLDCPGVVMLKSGENDASIALRNCKRIEKLDDPVGPVKEILNRCPANLLISLYKLPSFDSVDDFLQKVATVRGKLKKGGIVDVEAAARIILHDWNEGKIPYYTMPP 385
            NVG T G TR +QEV+LD  +++LD P +V+      +A +A+      +   D +  V  IL  C    L+  Y LP + +  + +  +A  RG LKKGG+ D EAA R++ +DW   ++ YY  PP
Sbjct:  274 NVGPTKGTTRVLQEVRLDPQIRMLDSPALVV---SPQNAPLAVMLRSVSDCNVDVLAAVSAILKHCSKQELMLHYTLPDYRNSLECVTLLAQRRGLLKKGGVPDTEAAGRLLFNDWMGVRMKYYCQPP 398          
BLAST of CX289183 vs. ExPASy Swiss-Prot
Match: GNL3_XENLA (Guanine nucleotide-binding protein-like 3 OS=Xenopus laevis GN=gnl3 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 7.042e-15
Identity = 50/166 (30.12%), Postives = 85/166 (51.20%), Query Frame = 2
Query:    2 NVGATPGLTRSMQEVQLDKNVKLLDCPGVVMLKSGENDASIALRNCKRIEKLDDPVGPVKEILNRCPANLLISLYKLPSFDSVDDFLQKVATVRGKLKKGGIVDVEAAARIILHDWNEGKIPYYTMPPARDQGIPSEAR-IVSELGKEFNVNEVYKNESSFIGSLK 496
            NVG + G T+ +QEV+LD  ++LLD P +++     ++  +AL      E   D +  V+ IL  C    L+  Y +  + +  + L  +A  RG LKKGG+ D E A R++ +DW   ++ YY  PP      P  +R +V+ +       E+  + +S + +LK
Sbjct:  274 NVGPSKGTTKFLQEVRLDPQIRLLDSPALLV---SPHNPPVALMLRSASESKVDVLAAVEAILKHCSKQELMLHYTIADYRNSLECLTLLAHRRGMLKKGGVPDTEGAGRLLFNDWMGARMKYYCRPPDSPVCQPHISREVVAAMSSGICSEELAMDNASTLKALK 436          
BLAST of CX289183 vs. ExPASy Swiss-Prot
Match: Y1464_METJA (Uncharacterized GTP-binding protein MJ1464 OS=Methanocaldococcus jannaschii GN=MJ1464 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 3.495e-14
Identity = 43/125 (34.40%), Postives = 75/125 (60.00%), Query Frame = 2
Query:    8 GATPGLTRSMQEVQLDKNVKLLDCPGVVMLKSGENDASIALRNCKRIEKLDDPVGPVKEILNRCP--ANLLISLYKLPSFDSVD-DFLQKVATVRGKLKKGGIVDVEAAARIILHDWNEGKIPYY 373
            G+  GLT+  Q V+L KN+KL+D PGV+ ++   ++  + +    R+EK+++P+ P  +IL+R     N +I  Y    ++ VD + L+K+   R  L KGG VD+   A+ I+ ++ +GK+ YY
Sbjct:  139 GSVAGLTKGEQWVRLTKNIKLMDTPGVLEMR---DEDDLVISGALRLEKVENPIPPALKILSRINNFDNSIIKEYFGVDYEEVDEELLKKIGNKRSYLTKGGEVDLVRTAKTIIKEYQDGKLNYY 260          
BLAST of CX289183 vs. ExPASy Swiss-Prot
Match: NUG1_YEAST (Nuclear GTP-binding protein NUG1 OS=Saccharomyces cerevisiae GN=NUG1 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.124e-12
Identity = 57/204 (27.94%), Postives = 97/204 (47.55%), Query Frame = 2
Query:    5 VGATPGLTRSMQEVQLDKNVKLLDCPGVVMLKSG------ENDASIALRNCKRIEKLDDPVGPVKEILNRCPANLLIS-----LYKLPSFDSVD------DFLQKVATVRGKLKKGGIVDVEAAARIILHDWNEGKIPYYTMP----PARDQG----------------IPSEARIVSELGKEFNVNEVYKNESSFIGSLKSVD 505
            VG   G+T S++E+++D  +K+LD PG+            E++A +AL N    + + DP   V  ++ R   +  ++     LY++P   + D       FL  VA  RG+L KGGI ++ +A   +L+DW +GKI  + +P     A  Q                   +E+ IVSE  KEF+++ ++ +    I + K  D
Sbjct:  313 VGNEAGVTTSLREIKIDNKLKILDSPGICFPSENKKRSKVEHEAELALLNALPAKHIVDPYPAVLMLVKRLAKSDEMTESFKKLYEIPPIPANDADTFTKHFLIHVARKRGRLGKGGIPNLASAGLSVLNDWRDGKILGWVLPNTSAAASQQDKQNLSTINTGTKQAPIAANESTIVSEWSKEFDLDGLFSSLDKAIDASKDQD 516          
BLAST of CX289183 vs. ExPASy Swiss-Prot
Match: LSG1_YEAST (Large subunit GTPase 1 OS=Saccharomyces cerevisiae GN=LSG1 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.723e-11
Identity = 44/163 (26.99%), Postives = 69/163 (42.33%), Query Frame = 2
Query:    2 NVGATPGLTRSMQEVQLDKNVKLLDCPGVVMLKSGENDASIALRNCKRIEKLDDPVGPVKEILNRCPANLLISLYKL------------PSFDSVDDFLQKVATVRGKLKKG-GIVDVEAAARIILHDWNEGKIPYYTMPPARDQGIPSEARIVSELGKEFNV 451
            +V +TPG T+  Q ++L  +V L DCPG+V      N   +       I++L D +GP   +  R P   + ++Y +                +  + L   A  RG + +G G  D   A+R IL D+  GK+ Y   PP  +   P       E  K+  V
Sbjct:  363 SVSSTPGKTKHFQTIKLSDSVMLCDCPGLVFPNFAYNKGELVCNGVLPIDQLRDYIGPAGLVAERIPKYYIEAIYGIHIQTKSRDEGGNGDIPTAQELLVAYARARGYMTQGYGSADEPRASRYILKDYVNGKLLYVNPPPHLEDDTPYTREECEEFNKDLYV 525          
The following BLAST results are available for this feature:
BLAST of CX289183 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
NOG2_NEUCR5.760e-1732.58Nucleolar GTP-binding protein 2 OS=Neurospora cras... [more]
NOG2_CRYNV2.859e-1627.60Nucleolar GTP-binding protein 2 OS=Cryptococcus ne... [more]
NOG2_PNECA1.086e-1532.03Nucleolar GTP-binding protein 2 OS=Pneumocystis ca... [more]
GNL3_XENTR3.161e-1535.94Guanine nucleotide-binding protein-like 3 OS=Xenop... [more]
GNL3_XENLA7.042e-1530.12Guanine nucleotide-binding protein-like 3 OS=Xenop... [more]
Y1464_METJA3.495e-1434.40Uncharacterized GTP-binding protein MJ1464 OS=Meth... [more]
NUG1_YEAST1.124e-1227.94Nuclear GTP-binding protein NUG1 OS=Saccharomyces ... [more]
LSG1_YEAST4.723e-1126.99Large subunit GTPase 1 OS=Saccharomyces cerevisiae... [more]

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Properties
Property NameValue
Genbank descriptionC02010B06SK IF1 Citrus clementina cDNA clone C02010B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289183 ID=CX289183; Name=CX289183; organism=Citrus clementina; type=EST; length=526bp
AAATGTTGGGGCTACTCCTGGGTTAACCAGGTCAATGCAGGAAGTTCAGT
TAGACAAGAATGTTAAATTGTTGGACTGCCCTGGTGTTGTAATGCTTAAA
TCTGGAGAAAATGATGCATCTATAGCTCTTAGAAACTGCAAAAGGATTGA
AAAATTAGATGATCCTGTTGGTCCTGTGAAGGAAATTCTCAACCGTTGCC
CTGCCAATCTGTTGATATCACTATACAAGCTCCCCAGCTTTGATTCAGTT
GATGACTTCCTGCAGAAGGTGGCTACTGTCAGGGGTAAGCTTAAAAAGGG
TGGTATTGTGGATGTTGAAGCTGCTGCAAGGATTATTCTGCACGACTGGA
ATGAGGGTAAAATTCCATATTACACTATGCCTCCGGCTAGGGATCAAGGA
ATTCCTTCAGAGGCAAGGATAGTTTCAGAGTTAGGAAAGGAATTTAATGT
TAATGAGGTTTATAAGAACGAATCTTCATTCATTGGAAGCCTCAAGTCTG
TTGACGACTTTCAACCTGTTGAAGTT
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