CX289186

Overview
NameCX289186
Unique NameCX289186
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length501
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX289186 vs. ExPASy Swiss-Prot
Match: SNF12_DICDI (SWI/SNF complex component SNF12 homolog OS=Dictyostelium discoideum GN=snf12-1 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 5.443e-11
Identity = 41/154 (26.62%), Postives = 75/154 (48.70%), Query Frame = 2 
Query:    2 FGEEKIKFATISQKISQXXXXXXXXXXEHKIKLSGNSPAGTSCYDMLVDVPFPLEKEMAAFLANMEKNKEIDACDELICASIKKIHEHRRRRAFFLGFSQSPGEFINALIASQSKDLKLVAGDASRNPEKECRSDFFNQPWVEDAVIRYMNRKS 463
            F  E+++F  I Q + +          ++ + LSG++      YD+ V+V  P+      F  N    KEI   ++ I   I+K+++H+R+R F    S  P  F+N   A+  KD ++     S   E+E  + F+ QP  E+ V  Y+++++
Sbjct:  290 FSLEELQFNQIPQLLREHLSPPDPLEFQYTLHLSGDAKDYEQAYDIQVEVDEPI------FNPNPTMRKEISQLNDEINHHIQKVYQHKRKREFMEKLSSDPLGFLNDTTANLVKDFQVSKSTTSTGFEEERHASFYYQPMTEELVKNYLSKQT 437
The following BLAST results are available for this feature:
BLAST of CX289186 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
SNF12_DICDI5.443e-1126.62SWI/SNF complex component SNF12 homolog OS=Dictyos... [more]

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Properties
Property NameValue
Genbank descriptionC02010B09SK IF1 Citrus clementina cDNA clone C02010B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289186 ID=CX289186; Name=CX289186; organism=Citrus clementina; type=EST; length=501bp
ATTTGGGGAAGAGAAGATTAAATTTGCTACGATTTCCCAGAAGATTTCAC
AGCATTTAATACCTCCACCACCTATACATTTGGAGCACAAGATAAAGCTT
TCAGGGAATAGCCCTGCTGGAACTTCTTGTTATGACATGCTTGTCGATGT
GCCTTTTCCACTAGAAAAGGAAATGGCTGCCTTTTTGGCAAACATGGAAA
AGAACAAAGAGATTGATGCTTGTGATGAACTAATATGTGCTTCTATAAAG
AAGATACATGAGCATCGCCGGAGGCGGGCTTTCTTTCTTGGTTTCAGTCA
GTCTCCAGGGGAGTTTATTAATGCTTTAATTGCTTCTCAAAGTAAGGATC
TAAAGCTTGTTGCTGGAGACGCTAGCCGTAATCCAGAAAAAGAGTGTCGG
TCTGATTTCTTTAATCAGCCATGGGTTGAAGACGCTGTCATCCGTTACAT
GAATCGCAAATCTGCTGGGAGTGATGCTGCTGGAAGCACTTAATATGGAT
A
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