CX289192

Overview
NameCX289192
Unique NameCX289192
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length510
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289192 vs. ExPASy Swiss-Prot
Match: NDK_HALLT (Nucleoside diphosphate kinase OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=ndk PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 1.372e-33
Identity = 62/116 (53.45%), Postives = 85/116 (73.28%), Query Frame = 3
Query:  162 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGS 509
            E+TF+M+KPDGVQRGL+GEI+ RFE++G  L G K M +D   A +HY +   KPFF  L+++ITS PV AM+WEG    +  R+++G T+PA+SAPGTIRGD  +  G+N+IH S
Sbjct:    6 ERTFVMVKPDGVQRGLIGEIVSRFEERGLKLVGGKFMQIDEDLAHQHYGEHEGKPFFDGLVDFITSAPVFAMVWEGADATRQVRSMVGETDPAESAPGTIRGDFGLDLGQNVIHAS 121          
BLAST of CX289192 vs. ExPASy Swiss-Prot
Match: NDK_EXIS2 (Nucleoside diphosphate kinase OS=Exiguobacterium sibiricum (strain DSM 17290 / JCM 13490 / 255-15) GN=ndk PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 1.792e-33
Identity = 65/117 (55.56%), Postives = 85/117 (72.65%), Query Frame = 3
Query:  159 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGS 509
            MEQTF+M+KPDGV+RGL+GEII R E+KGF ++ +K+M V    A+ HY + + KPFFG L+ ++TSGPVVA+  EGE VV   R +IG T P ++ PGTIRGD A     N+IHGS
Sbjct:    1 MEQTFLMVKPDGVERGLIGEIIARIERKGFVIREMKMMQVTEELAQAHYAEHAEKPFFGELVTFLTSGPVVALRVEGEDVVTVSRMMIGKTKPTEALPGTIRGDFANTMSENVIHGS 117          
BLAST of CX289192 vs. ExPASy Swiss-Prot
Match: NDK_UNCMA (Nucleoside diphosphate kinase OS=Uncultured methanogenic archaeon RC-I GN=ndk PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 2.340e-33
Identity = 64/118 (54.24%), Postives = 88/118 (74.58%), Query Frame = 3
Query:  156 EMEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGS 509
            E E+TF+M+KPDGVQRGLVGEII RFE++G  + G+K++ V    A++HY + ++KPFF  L+ +I SGP VAM+ EG+  V   R+++G T P +SAPGTIRGD A+  GRN+IH S
Sbjct:    3 ERERTFVMVKPDGVQRGLVGEIISRFERRGLKIVGMKMLEVSEELAKQHYAEHAAKPFFPGLVSFIRSGPTVAMVIEGKDAVSMVRSMLGKTKPIESAPGTIRGDFALDMGRNVIHAS 120          
BLAST of CX289192 vs. ExPASy Swiss-Prot
Match: NDK3_MOUSE (Nucleoside diphosphate kinase 3 OS=Mus musculus GN=Nme3 PE=2 SV=3)

HSP 1 Score: 140.969 bits (354), Expect = 3.056e-33
Identity = 63/116 (54.31%), Postives = 84/116 (72.41%), Query Frame = 3
Query:  162 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGS 509
            E+TF+ +KPDGVQR LVGEI+ RFE+KGF L  LKL+        +HY +L  KPF+  L++Y++SGPVVAM+W+G  VV   R +IGAT+P  + PGTIRGD  +  G+N+IHGS
Sbjct:   22 ERTFLAVKPDGVQRRLVGEIVRRFERKGFKLVALKLVQASEELLREHYVELREKPFYSRLVKYMSSGPVVAMVWQGLDVVHASRALIGATDPGDAMPGTIRGDFCMEVGKNVIHGS 137          
BLAST of CX289192 vs. ExPASy Swiss-Prot
Match: NDK_RUBXD (Nucleoside diphosphate kinase OS=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) GN=ndk PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 3.991e-33
Identity = 67/117 (57.26%), Postives = 88/117 (75.21%), Query Frame = 3
Query:  159 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGS 509
            MEQT ++IK DGV+R L+GEII R E KG +++ LK+M V R  AE+HY +   KPFFG L+E+ITS PVVAM  EGEG +   R ++GAT+PA++APGTIRGDLA+    N++HGS
Sbjct:    1 MEQTLVLIKGDGVRRRLIGEIIRRLENKGLAIRDLKMMRVSRELAEEHYAEHREKPFFGELVEFITSAPVVAMRVEGEGAIGVVRNLMGATDPAKAAPGTIRGDLALSMPDNLVHGS 117          
BLAST of CX289192 vs. ExPASy Swiss-Prot
Match: NDK_FRASC (Nucleoside diphosphate kinase OS=Frankia sp. (strain CcI3) GN=ndk PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 5.213e-33
Identity = 62/117 (52.99%), Postives = 92/117 (78.63%), Query Frame = 3
Query:  159 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGS 509
            +E+T I++KPDGV RGLVGE++ R E+KG +L  L+L T++R  AE HY + +SKPFFG L+++ITSGP+VA++ EG   V+  R +IGAT+P ++APG++RGD A+  G+N++HGS
Sbjct:    3 VERTLILVKPDGVSRGLVGEVVGRLERKGLTLVALELRTLERSVAETHYGEHASKPFFGELVDFITSGPLVALVAEGPRAVEASRGLIGATDPVKAAPGSLRGDYALEIGQNLVHGS 119          
BLAST of CX289192 vs. ExPASy Swiss-Prot
Match: NDK_LISW6 (Nucleoside diphosphate kinase OS=Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) GN=ndk PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 8.891e-33
Identity = 64/117 (54.70%), Postives = 86/117 (73.50%), Query Frame = 3
Query:  159 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGS 509
            MEQT++M+KPDGV+RGL+GEI+ + EKKG  L   KL+ +DR  AE+HY +   KPFF  LI +ITSGPV AM+ EG+ V+K  R ++G TNP ++  GTIR + A+ T RN+IHGS
Sbjct:    1 MEQTYVMVKPDGVERGLIGEIVAKIEKKGIKLVAGKLIQIDRKLAEQHYAEHIGKPFFEDLIGFITSGPVFAMVLEGDDVIKIARRMMGKTNPLEADAGTIRAEYAVHTNRNVIHGS 117          
BLAST of CX289192 vs. ExPASy Swiss-Prot
Match: NDK_HALWD (Nucleoside diphosphate kinase OS=Haloquadratum walsbyi (strain DSM 16790) GN=ndk PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 1.161e-32
Identity = 63/116 (54.31%), Postives = 83/116 (71.55%), Query Frame = 3
Query:  162 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGS 509
            E+TF+M+KPDGVQRGL+GEII RFE +G +L G K   +D   A  HY +   KPFF  L+ +IT+GPV AM+WEG    +  R+++G T+PA+SAPGTIRGD  +  GRN+IH S
Sbjct:    9 ERTFVMVKPDGVQRGLIGEIISRFEDRGLTLVGGKFTRLDTEVARDHYGEHKDKPFFDDLVSFITAGPVFAMVWEGADATRQVRSMVGETDPAESAPGTIRGDYGLDLGRNVIHAS 124          
BLAST of CX289192 vs. ExPASy Swiss-Prot
Match: NDK_FRASN (Nucleoside diphosphate kinase OS=Frankia sp. (strain EAN1pec) GN=ndk PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 1.161e-32
Identity = 63/116 (54.31%), Postives = 90/116 (77.59%), Query Frame = 3
Query:  162 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGS 509
            E+T I++KPDGV RGLVGE++ R E+KG  +  L+L T++R  AE HY + +SKPFFG L+E+ITSGP+VA++ EG   V+  R +IGAT+P ++APG++RGD A+  G+N+IHGS
Sbjct:    4 ERTLILVKPDGVSRGLVGEVVGRIERKGLKIVALELRTLERSVAETHYGEHASKPFFGELVEFITSGPLVALVAEGPRAVEALRGLIGATDPVKAAPGSLRGDFALEIGQNLIHGS 119          
BLAST of CX289192 vs. ExPASy Swiss-Prot
Match: NDK_METMA (Nucleoside diphosphate kinase OS=Methanosarcina mazei GN=ndk PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 1.517e-32
Identity = 63/117 (53.85%), Postives = 87/117 (74.36%), Query Frame = 3
Query:  159 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGS 509
            MEQT++M+KPDGVQRGLVGE+I R EK+G  +  L++  +    A++HY + +++PFF SLIE+ITSGP V+M+  G+  +K  R I GATNP  +APGTIRGD A+  GRN++H S
Sbjct:    1 MEQTYVMVKPDGVQRGLVGEVISRIEKRGLKIVALRMNVIAEATAKEHYGEHAARPFFPSLIEFITSGPSVSMVVAGKDAIKVMRAINGATNPVDAAPGTIRGDFALDVGRNVVHAS 117          
The following BLAST results are available for this feature:
BLAST of CX289192 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDK_HALLT1.372e-3353.45Nucleoside diphosphate kinase OS=Halorubrum lacusp... [more]
NDK_EXIS21.792e-3355.56Nucleoside diphosphate kinase OS=Exiguobacterium s... [more]
NDK_UNCMA2.340e-3354.24Nucleoside diphosphate kinase OS=Uncultured methan... [more]
NDK3_MOUSE3.056e-3354.31Nucleoside diphosphate kinase 3 OS=Mus musculus GN... [more]
NDK_RUBXD3.991e-3357.26Nucleoside diphosphate kinase OS=Rubrobacter xylan... [more]
NDK_FRASC5.213e-3352.99Nucleoside diphosphate kinase OS=Frankia sp. (stra... [more]
NDK_LISW68.891e-3354.70Nucleoside diphosphate kinase OS=Listeria welshime... [more]
NDK_HALWD1.161e-3254.31Nucleoside diphosphate kinase OS=Haloquadratum wal... [more]
NDK_FRASN1.161e-3254.31Nucleoside diphosphate kinase OS=Frankia sp. (stra... [more]
NDK_METMA1.517e-3253.85Nucleoside diphosphate kinase OS=Methanosarcina ma... [more]

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Properties
Property NameValue
Genbank descriptionC02010C03SK IF1 Citrus clementina cDNA clone C02010C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289192 ID=CX289192; Name=CX289192; organism=Citrus clementina; type=EST; length=510bp
AAGGCGAATATTCGTTAGTGATTAGTGATTAGGGTTACGATTCAGCGTTT
CTTTACATATATACTCACTTGCAAAACGGCAAGCTCATTCTCTCGCATGT
GTGCTGTGCTATTTCACTCAATTCTCAAAACAAGTTGGTTTCTCTGAATC
TCAAAGAAATGGAACAAACTTTCATCATGATCAAGCCCGATGGGGTCCAA
AGAGGCCTTGTTGGTGAAATCATCATCAGATTTGAGAAGAAGGGTTTCTC
TTTGAAGGGTTTGAAGCTTATGACTGTGGACCGCCCTTTTGCTGAGAAGC
ACTATGAGGATTTGTCATCGAAGCCTTTCTTTGGTTCTCTGATTGAGTAC
ATTACCTCTGGTCCTGTTGTTGCTATGATTTGGGAGGGTGAAGGTGTTGT
TAAGACTGGCCGCACTATTATTGGAGCCACCAACCCTGCGCAGTCTGCTC
CTGGAACCATCCGTGGTGATTTGGCTATCGTGACGGGCAGGAATATTATC
CATGGAAGTG
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