CX289192

Overview
NameCX289192
Unique NameCX289192
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length510
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX289192 vs. ExPASy Swiss-Prot
Match: NDK_RICFE (Nucleoside diphosphate kinase OS=Rickettsia felis GN=ndk PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 7.807e-21
Identity = 50/117 (42.74%), Postives = 72/117 (61.54%), Query Frame = 3 
Query:  159 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGS 509
            ++ TF MIKPD ++R  +G++    E  G  +   K+  + +  AE  Y++  ++PFF SL+EYITSG VV  + +GE  +   RTI+GATNPA++  GTIR DL      N IHGS
Sbjct:    3 IQYTFSMIKPDAIKRNKIGQVNTYLENAGLKIVAQKMKFLTKYEAECFYDEHRARPFFNSLVEYITSGAVVLQVLKGEDAIILNRTIMGATNPAEAEAGTIRKDLGESIEANSIHGS 119
[Close]
BLAST of CX289192 vs. ExPASy Swiss-Prot
Match: NDK_PSYWF (Nucleoside diphosphate kinase OS=Psychrobacter sp. (strain PRwf-1) GN=ndk PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 7.807e-21
Identity = 49/117 (41.88%), Postives = 70/117 (59.83%), Query Frame = 3 
Query:  159 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGS 509
            +E+T  +IKPD V    +G I  RFE+ G  + G K++ +D   A   Y +   +PF+  L+ ++TSGPVV  + EGE  +   R I+GATNPA++A GTIR D A     N +HGS
Sbjct:    3 IERTLSIIKPDAVGGNHIGAIYSRFEEAGLKIVGAKMLHLDDEKAGGFYAEHKERPFYNDLVSFMTSGPVVVSVLEGENAIAKHREIMGATNPAEAAEGTIRKDFASSIDENAVHGS 119
[Close]
BLAST of CX289192 vs. ExPASy Swiss-Prot
Match: NDK_PSEAE (Nucleoside diphosphate kinase OS=Pseudomonas aeruginosa GN=ndk PE=3 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 7.807e-21
Identity = 45/117 (38.46%), Postives = 71/117 (60.68%), Query Frame = 3 
Query:  159 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGS 509
            +++T  +IKPD V + ++GEI+ RFEK G  +   K++ +    A   Y +   +PFF  L+ ++TSGPVV  + EGE  +   R ++GAT+P ++  GTIR D A+    N +HGS
Sbjct:    3 LQRTLSIIKPDAVSKNVIGEILTRFEKAGLRVVAAKMVQLSEREAGGFYAEHKERPFFKDLVSFMTSGPVVVQVLEGEDAIAKNRELMGATDPKKADAGTIRADFAVSIDENAVHGS 119
[Close]
BLAST of CX289192 vs. ExPASy Swiss-Prot
Match: NDK_PSEAB (Nucleoside diphosphate kinase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=ndk PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 7.807e-21
Identity = 45/117 (38.46%), Postives = 71/117 (60.68%), Query Frame = 3 
Query:  159 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGS 509
            +++T  +IKPD V + ++GEI+ RFEK G  +   K++ +    A   Y +   +PFF  L+ ++TSGPVV  + EGE  +   R ++GAT+P ++  GTIR D A+    N +HGS
Sbjct:    3 LQRTLSIIKPDAVSKNVIGEILTRFEKAGLRVVAAKMVQLSEREAGGFYAEHKERPFFKDLVSFMTSGPVVVQVLEGEDAIAKNRELMGATDPKKADAGTIRADFAVSIDENAVHGS 119
[Close]
BLAST of CX289192 vs. ExPASy Swiss-Prot
Match: NDK_PSEA8 (Nucleoside diphosphate kinase OS=Pseudomonas aeruginosa (strain LESB58) GN=ndk PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 7.807e-21
Identity = 45/117 (38.46%), Postives = 71/117 (60.68%), Query Frame = 3 
Query:  159 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGS 509
            +++T  +IKPD V + ++GEI+ RFEK G  +   K++ +    A   Y +   +PFF  L+ ++TSGPVV  + EGE  +   R ++GAT+P ++  GTIR D A+    N +HGS
Sbjct:    3 LQRTLSIIKPDAVSKNVIGEILTRFEKAGLRVVAAKMVQLSEREAGGFYAEHKERPFFKDLVSFMTSGPVVVQVLEGEDAIAKNRELMGATDPKKADAGTIRADFAVSIDENAVHGS 119
[Close]
BLAST of CX289192 vs. ExPASy Swiss-Prot
Match: NDK_PSEA7 (Nucleoside diphosphate kinase OS=Pseudomonas aeruginosa (strain PA7) GN=ndk PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 7.807e-21
Identity = 45/117 (38.46%), Postives = 71/117 (60.68%), Query Frame = 3 
Query:  159 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGS 509
            +++T  +IKPD V + ++GEI+ RFEK G  +   K++ +    A   Y +   +PFF  L+ ++TSGPVV  + EGE  +   R ++GAT+P ++  GTIR D A+    N +HGS
Sbjct:    3 LQRTLSIIKPDAVSKNVIGEILTRFEKAGLRVVAAKMVQLSEREAGGFYAEHKERPFFKDLVSFMTSGPVVVQVLEGEDAIAKNRELMGATDPKKADAGTIRADFAVSIDENAVHGS 119
[Close]
BLAST of CX289192 vs. ExPASy Swiss-Prot
Match: NDK_KLEP7 (Nucleoside diphosphate kinase OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=ndk PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 7.807e-21
Identity = 48/117 (41.03%), Postives = 71/117 (60.68%), Query Frame = 3 
Query:  159 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGS 509
            +E+TF +IKP+ V + ++G I  RFE  GF + G K++ +    A   Y +   +PFF  L+E++TSGP+V  + EGE  V+  R ++GATNPA +  GT+R D A     N  HGS
Sbjct:    3 IERTFSIIKPNAVAKNVIGSIFSRFEAAGFKIVGTKMLHLTVEQARGFYAEHEGRPFFDGLVEFMTSGPIVVSVLEGENAVQRHRDLLGATNPANALAGTLRADYADSFTENGTHGS 119
[Close]
BLAST of CX289192 vs. ExPASy Swiss-Prot
Match: NDK_KLEP3 (Nucleoside diphosphate kinase OS=Klebsiella pneumoniae (strain 342) GN=ndk PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 7.807e-21
Identity = 48/117 (41.03%), Postives = 71/117 (60.68%), Query Frame = 3 
Query:  159 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGS 509
            +E+TF +IKP+ V + ++G I  RFE  GF + G K++ +    A   Y +   +PFF  L+E++TSGP+V  + EGE  V+  R ++GATNPA +  GT+R D A     N  HGS
Sbjct:    3 IERTFSIIKPNAVAKNVIGSIFSRFEAAGFKIVGTKMLHLTVEQARGFYAEHEGRPFFDGLVEFMTSGPIVVSVLEGENAVQRHRDLLGATNPANALAGTLRADYADSFTENGTHGS 119
[Close]
BLAST of CX289192 vs. ExPASy Swiss-Prot
Match: NDK_HALHL (Nucleoside diphosphate kinase OS=Halorhodospira halophila (strain DSM 244 / SL1) GN=ndk PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 7.807e-21
Identity = 46/117 (39.32%), Postives = 71/117 (60.68%), Query Frame = 3 
Query:  159 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGS 509
            +E+T  +IKPD V +  +GEI+ RFE+ G  +   +++ +    AE  Y     +PFF  L+ ++TSGPV+  + EGE  ++  R I+GATNP ++A GT+R D A     N +HGS
Sbjct:    3 VERTLSIIKPDAVAQNAIGEILARFERSGLRVVAARMVRLSTEQAESFYAVHKERPFFNDLVGFMTSGPVMVQVLEGEDAIRKNREIMGATNPKEAAAGTLRHDFAESIDANAVHGS 119
[Close]
BLAST of CX289192 vs. ExPASy Swiss-Prot
Match: NDK_YERP3 (Nucleoside diphosphate kinase OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=ndk PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.020e-20
Identity = 47/117 (40.17%), Postives = 71/117 (60.68%), Query Frame = 3 
Query:  159 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGS 509
            +E+TF +IKP+ V    +G I  RFE  GF++   K++ + +  AE  Y +   +PFF  L+E++TSGP++  + EGE  V+  R I+GATNP  +  GT+R D A     N +HGS
Sbjct:    3 LERTFSIIKPNAVANNNIGAIYARFESAGFNIIAAKMLHLTKEQAEGFYAEHKGRPFFDGLVEFMTSGPIMVQVLEGENAVQRHRDIMGATNPDNALAGTLRADFADSFTANAVHGS 119
The following BLAST results are available for this feature:
BLAST of CX289192 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDK_RICFE7.807e-2142.74Nucleoside diphosphate kinase OS=Rickettsia felis ... [more]
NDK_PSYWF7.807e-2141.88Nucleoside diphosphate kinase OS=Psychrobacter sp.... [more]
NDK_PSEAE7.807e-2138.46Nucleoside diphosphate kinase OS=Pseudomonas aerug... [more]
NDK_PSEAB7.807e-2138.46Nucleoside diphosphate kinase OS=Pseudomonas aerug... [more]
NDK_PSEA87.807e-2138.46Nucleoside diphosphate kinase OS=Pseudomonas aerug... [more]
NDK_PSEA77.807e-2138.46Nucleoside diphosphate kinase OS=Pseudomonas aerug... [more]
NDK_KLEP77.807e-2141.03Nucleoside diphosphate kinase OS=Klebsiella pneumo... [more]
NDK_KLEP37.807e-2141.03Nucleoside diphosphate kinase OS=Klebsiella pneumo... [more]
NDK_HALHL7.807e-2139.32Nucleoside diphosphate kinase OS=Halorhodospira ha... [more]
NDK_YERP31.020e-2040.17Nucleoside diphosphate kinase OS=Yersinia pseudotu... [more]

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Properties
Property NameValue
Genbank descriptionC02010C03SK IF1 Citrus clementina cDNA clone C02010C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289192 ID=CX289192; Name=CX289192; organism=Citrus clementina; type=EST; length=510bp
AAGGCGAATATTCGTTAGTGATTAGTGATTAGGGTTACGATTCAGCGTTT
CTTTACATATATACTCACTTGCAAAACGGCAAGCTCATTCTCTCGCATGT
GTGCTGTGCTATTTCACTCAATTCTCAAAACAAGTTGGTTTCTCTGAATC
TCAAAGAAATGGAACAAACTTTCATCATGATCAAGCCCGATGGGGTCCAA
AGAGGCCTTGTTGGTGAAATCATCATCAGATTTGAGAAGAAGGGTTTCTC
TTTGAAGGGTTTGAAGCTTATGACTGTGGACCGCCCTTTTGCTGAGAAGC
ACTATGAGGATTTGTCATCGAAGCCTTTCTTTGGTTCTCTGATTGAGTAC
ATTACCTCTGGTCCTGTTGTTGCTATGATTTGGGAGGGTGAAGGTGTTGT
TAAGACTGGCCGCACTATTATTGGAGCCACCAACCCTGCGCAGTCTGCTC
CTGGAACCATCCGTGGTGATTTGGCTATCGTGACGGGCAGGAATATTATC
CATGGAAGTG
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