CX289192

Overview
NameCX289192
Unique NameCX289192
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length510
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289192 vs. ExPASy Swiss-Prot
Match: NDK_SYNPX (Nucleoside diphosphate kinase OS=Synechococcus sp. (strain WH8102) GN=ndk PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 1.084e-38
Identity = 74/116 (63.79%), Postives = 92/116 (79.31%), Query Frame = 3
Query:  162 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGS 509
            E+TFI IKPDGVQRGLVGEI+ RFE+KGF L GLK +T  R  AE+HY     +PFF  L+++ITSGPVVAM+WEG+GV+ + R +IGAT P ++ PGTIRGDLA+  GRN+IHGS
Sbjct:    3 ERTFIAIKPDGVQRGLVGEILGRFERKGFKLVGLKQITPSRALAEQHYGVHKERPFFAGLVDFITSGPVVAMVWEGDGVIASARKLIGATKPLEAEPGTIRGDLAVNIGRNVIHGS 118          
BLAST of CX289192 vs. ExPASy Swiss-Prot
Match: NDKA_RAT (Nucleoside diphosphate kinase A OS=Rattus norvegicus GN=Nme1 PE=1 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 1.084e-38
Identity = 76/116 (65.52%), Postives = 88/116 (75.86%), Query Frame = 3
Query:  162 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGS 509
            E+TFI IKPDGVQRGLVGEII RFE+KGF L GLK +       ++HY DL  +PFF  L++Y+ SGPVVAM+WEG  VVKTGR ++G TNPA S PGTIRGD  I  GRNIIHGS
Sbjct:    5 ERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFIQASEDLLKEHYIDLKDRPFFSGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGS 120          
BLAST of CX289192 vs. ExPASy Swiss-Prot
Match: NDK_SYNS9 (Nucleoside diphosphate kinase OS=Synechococcus sp. (strain CC9902) GN=ndk PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 1.850e-38
Identity = 74/116 (63.79%), Postives = 91/116 (78.45%), Query Frame = 3
Query:  162 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGS 509
            E+TF+ IKPDGVQRGLVGEI+ RFE+KGF L GLK +T  R  AE+HY     +PFF  L+ +ITSGPVVAM+WEG+GV+ + R +IGAT P +S PGTIRGDLA+  GRN+IHGS
Sbjct:    3 ERTFVAIKPDGVQRGLVGEILGRFERKGFKLVGLKQITPSRALAEEHYGVHKERPFFAGLVGFITSGPVVAMVWEGDGVIASARKLIGATKPLESEPGTIRGDLAVNIGRNVIHGS 118          
BLAST of CX289192 vs. ExPASy Swiss-Prot
Match: NDK_BREBN (Nucleoside diphosphate kinase OS=Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599) GN=ndk PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 1.850e-38
Identity = 71/117 (60.68%), Postives = 89/117 (76.07%), Query Frame = 3
Query:  159 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGS 509
            ME+TF+M+KPDGVQR L+GEI+ RFEKKG+ L G KLMTV R  AE+HY +   +PFFG L+++ITSGPV AM+W+G  V+ T R ++G TNP  +A GTIRGD A   G NIIHGS
Sbjct:    1 MEKTFLMVKPDGVQRNLIGEIVSRFEKKGYQLVGAKLMTVSRELAEEHYAEHKERPFFGELVDFITSGPVFAMVWQGNNVITTARAMMGKTNPVDAASGTIRGDFATSVGMNIIHGS 117          
BLAST of CX289192 vs. ExPASy Swiss-Prot
Match: NDK_BACSU (Nucleoside diphosphate kinase OS=Bacillus subtilis GN=ndk PE=1 SV=3)

HSP 1 Score: 158.303 bits (399), Expect = 1.850e-38
Identity = 72/117 (61.54%), Postives = 89/117 (76.07%), Query Frame = 3
Query:  159 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGS 509
            ME+TFIM+KPDGVQR L+G+I+ RFE+KG  L G KLM V    AEKHY +   KPFFG L+E+ITSGPV AM+WEGE V++  R +IG TNP ++ PGTIRGD  +  G+NIIHGS
Sbjct:    2 MEKTFIMVKPDGVQRQLIGDILSRFERKGLQLAGAKLMRVTEQMAEKHYAEHQGKPFFGELVEFITSGPVFAMVWEGENVIEVTRQLIGKTNPKEALPGTIRGDYGMFVGKNIIHGS 118          
BLAST of CX289192 vs. ExPASy Swiss-Prot
Match: NDK_PROM1 (Nucleoside diphosphate kinase OS=Prochlorococcus marinus (strain NATL1A) GN=ndk PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 3.155e-38
Identity = 72/117 (61.54%), Postives = 91/117 (77.78%), Query Frame = 3
Query:  159 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGS 509
            +E+TF+ IKPDGVQRGL+ EI+ RFE KGF L GLK +T  +  AEKHY     +PFF  L+++ITSGPVVAM+WEGEGV+ + R +IGAT P ++ PGTIRGDLA+  GRN+IHGS
Sbjct:    3 LERTFVAIKPDGVQRGLIAEILGRFETKGFKLVGLKQLTPSKELAEKHYGVHKDRPFFSGLVDFITSGPVVAMVWEGEGVIASARKLIGATKPLEAEPGTIRGDLAVNIGRNVIHGS 119          
BLAST of CX289192 vs. ExPASy Swiss-Prot
Match: NDKB_PONAB (Nucleoside diphosphate kinase B OS=Pongo abelii GN=NME2 PE=2 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 3.155e-38
Identity = 74/120 (61.67%), Postives = 89/120 (74.17%), Query Frame = 3
Query:  150 LKEMEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGS 509
            +  +E+TFI IKPDGVQRGLVGEII RFE+KGF L  +K +       ++HY DL  +PFF  L++Y+ SGPVVAM+WEG  VVKTGR ++G TNPA S PGTIRGD  I  GRNIIHGS
Sbjct:    1 MANLERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLRASEEHLKQHYTDLKDRPFFPGLVKYMNSGPVVAMVWEGLNVVKTGRLMLGETNPADSKPGTIRGDFCIQVGRNIIHGS 120          
BLAST of CX289192 vs. ExPASy Swiss-Prot
Match: NDK_PROMT (Nucleoside diphosphate kinase OS=Prochlorococcus marinus (strain NATL2A) GN=ndk PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 4.121e-38
Identity = 71/117 (60.68%), Postives = 91/117 (77.78%), Query Frame = 3
Query:  159 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGS 509
            +E+TF+ IKPDGVQRGL+ EI+ RFE KGF L GLK +T  +  AEKHY     +PFF  L+++ITSGPV+AM+WEGEGV+ + R +IGAT P ++ PGTIRGDLA+  GRN+IHGS
Sbjct:    3 LERTFVAIKPDGVQRGLIAEILGRFETKGFKLVGLKQLTPSKELAEKHYGVHKDRPFFSGLVDFITSGPVIAMVWEGEGVIASARKLIGATKPLEAEPGTIRGDLAVNIGRNVIHGS 119          
BLAST of CX289192 vs. ExPASy Swiss-Prot
Match: NDKB_RAT (Nucleoside diphosphate kinase B OS=Rattus norvegicus GN=Nme2 PE=1 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 4.121e-38
Identity = 74/120 (61.67%), Postives = 89/120 (74.17%), Query Frame = 3
Query:  150 LKEMEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGS 509
            +  +E+TFI IKPDGVQRGLVGEII RFE+KGF L  +K +       ++HY DL  +PFF  L++Y+ SGPVVAM+WEG  VVKTGR ++G TNPA S PGTIRGD  I  GRNIIHGS
Sbjct:    1 MANLERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLRASEEHLKQHYIDLKDRPFFPGLVKYMNSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGS 120          
BLAST of CX289192 vs. ExPASy Swiss-Prot
Match: NDKB_MOUSE (Nucleoside diphosphate kinase B OS=Mus musculus GN=Nme2 PE=1 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 4.121e-38
Identity = 74/120 (61.67%), Postives = 89/120 (74.17%), Query Frame = 3
Query:  150 LKEMEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGS 509
            +  +E+TFI IKPDGVQRGLVGEII RFE+KGF L  +K +       ++HY DL  +PFF  L++Y+ SGPVVAM+WEG  VVKTGR ++G TNPA S PGTIRGD  I  GRNIIHGS
Sbjct:    1 MANLERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLRASEEHLKQHYIDLKDRPFFPGLVKYMNSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGS 120          
The following BLAST results are available for this feature:
BLAST of CX289192 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDK_SYNPX1.084e-3863.79Nucleoside diphosphate kinase OS=Synechococcus sp.... [more]
NDKA_RAT1.084e-3865.52Nucleoside diphosphate kinase A OS=Rattus norvegic... [more]
NDK_SYNS91.850e-3863.79Nucleoside diphosphate kinase OS=Synechococcus sp.... [more]
NDK_BREBN1.850e-3860.68Nucleoside diphosphate kinase OS=Brevibacillus bre... [more]
NDK_BACSU1.850e-3861.54Nucleoside diphosphate kinase OS=Bacillus subtilis... [more]
NDK_PROM13.155e-3861.54Nucleoside diphosphate kinase OS=Prochlorococcus m... [more]
NDKB_PONAB3.155e-3861.67Nucleoside diphosphate kinase B OS=Pongo abelii GN... [more]
NDK_PROMT4.121e-3860.68Nucleoside diphosphate kinase OS=Prochlorococcus m... [more]
NDKB_RAT4.121e-3861.67Nucleoside diphosphate kinase B OS=Rattus norvegic... [more]
NDKB_MOUSE4.121e-3861.67Nucleoside diphosphate kinase B OS=Mus musculus GN... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC02010C03SK IF1 Citrus clementina cDNA clone C02010C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289192 ID=CX289192; Name=CX289192; organism=Citrus clementina; type=EST; length=510bp
AAGGCGAATATTCGTTAGTGATTAGTGATTAGGGTTACGATTCAGCGTTT
CTTTACATATATACTCACTTGCAAAACGGCAAGCTCATTCTCTCGCATGT
GTGCTGTGCTATTTCACTCAATTCTCAAAACAAGTTGGTTTCTCTGAATC
TCAAAGAAATGGAACAAACTTTCATCATGATCAAGCCCGATGGGGTCCAA
AGAGGCCTTGTTGGTGAAATCATCATCAGATTTGAGAAGAAGGGTTTCTC
TTTGAAGGGTTTGAAGCTTATGACTGTGGACCGCCCTTTTGCTGAGAAGC
ACTATGAGGATTTGTCATCGAAGCCTTTCTTTGGTTCTCTGATTGAGTAC
ATTACCTCTGGTCCTGTTGTTGCTATGATTTGGGAGGGTGAAGGTGTTGT
TAAGACTGGCCGCACTATTATTGGAGCCACCAACCCTGCGCAGTCTGCTC
CTGGAACCATCCGTGGTGATTTGGCTATCGTGACGGGCAGGAATATTATC
CATGGAAGTG
back to top