CX289194

Overview
NameCX289194
Unique NameCX289194
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length630
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289194 vs. ExPASy Swiss-Prot
Match: WDS_DROME (Protein will die slowly OS=Drosophila melanogaster GN=wds PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 5.609e-13
Identity = 43/129 (33.33%), Postives = 76/129 (58.91%), Query Frame = 2
Query:  170 PSRTLQI-LQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWEL 553
            P+ TL+  L GHT  V  ++FS NG++LASSS D+   IW    +G    +  +SGH+  +S V+WSSD + L++   ++ ++ W++S+G  L   +     +  C ++P    I SG+ D+S+ +W++
Sbjct:   60 PNYTLKFTLAGHTKAVSAVKFSPNGEWLASSSADKLIKIWGA-YDG--KFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKVWELSTGKSLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 185          
BLAST of CX289194 vs. ExPASy Swiss-Prot
Match: Y2800_ANASP (Uncharacterized WD repeat-containing protein alr2800 OS=Anabaena sp. (strain PCC 7120) GN=alr2800 PE=4 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 7.325e-13
Identity = 41/146 (28.08%), Postives = 73/146 (50.00%), Query Frame = 2
Query:  113 SSDRDMSLYTDHQCGRDQIPSRTLQILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWE 550
            S DR + ++  H           L+   GHT+ V+ + +S + K L S S DR+  +W+   +  +   H   GH   V  V++S D Q L    ++++VR W+  +G CL  +       +   + PDR+ + SG+NDK++ +W+
Sbjct:  829 SGDRTIKIWNYHT-------GECLKTYIGHTNSVYSIAYSPDSKILVSGSGDRTIKLWDCQTHICIKTLH---GHTNEVCSVAFSPDGQTLACVSLDQSVRLWNCRTGQCLKAWYGNTDWALPVAFSPDRQILASGSNDKTVKLWD 964          

HSP 2 Score: 72.4034 bits (176), Expect = 2.131e-12
Identity = 39/122 (31.97%), Postives = 67/122 (54.92%), Query Frame = 2
Query:  182 LQILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMW 547
            ++ L GH  EV+ + F  +G+ LAS+S D++  +W  D+  G  L+  L+GH   V CV++S D   L +   +  ++ WDVS G CL   +     + S  +  D + + SG+ D++I +W
Sbjct:  719 IKTLTGHEHEVFSVAFHPDGETLASASGDKTIKLW--DIQDGTCLQ-TLTGHTDWVRCVAFSPDGNTLASSAADHTIKLWDVSQGKCLRTLKSHTGWVRSVAFSADGQTLASGSGDRTIKIW 837          

HSP 3 Score: 72.0182 bits (175), Expect = 2.784e-12
Identity = 45/138 (32.61%), Postives = 76/138 (55.07%), Query Frame = 2
Query:  161 DQIPSRTLQILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELEC 574
            D    R + IL+GH++ V+   FS NG+ +A+ S D++  IW  D   G  LK  L+GH   V  +++S D + L +   ++ VR WDV++G C H+       + S  + PD + + SG+ D+++ +W +  K  EC
Sbjct: 1090 DCCTGRCVGILRGHSNRVYSAIFSPNGEIIATCSTDQTVKIW--DWQQGKCLK-TLTGHTNWVFDIAFSPDGKILASASHDQTVRIWDVNTGKCHHICIGHTHLVSSVAFSPDGEVVASGSQDQTVRIWNV--KTGEC 1222          

HSP 4 Score: 71.2478 bits (173), Expect = 4.748e-12
Identity = 42/123 (34.15%), Postives = 67/123 (54.47%), Query Frame = 2
Query:  182 LQILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWE 550
            LQ L GHTD V  + FS +G  LASS+ D +  +W  D++ G  L+  L  H   V  V++S+D Q L +   +  ++ W+  +G CL  Y      + S  + PD K + SG+ D++I +W+
Sbjct:  761 LQTLTGHTDWVRCVAFSPDGNTLASSAADHTIKLW--DVSQGKCLR-TLKSHTGWVRSVAFSADGQTLASGSGDRTIKIWNYHTGECLKTYIGHTNSVYSIAYSPDSKILVSGSGDRTIKLWD 880          
BLAST of CX289194 vs. ExPASy Swiss-Prot
Match: Y163_SYNY3 (Uncharacterized WD repeat-containing protein sll0163 OS=Synechocystis sp. (strain PCC 6803) GN=sll0163 PE=4 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 7.325e-13
Identity = 49/162 (30.25%), Postives = 79/162 (48.77%), Query Frame = 2
Query:  143 DHQCGRDQIPSRTLQILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELECWKGQRTLKISDLEVTSDG 628
            D+  G  +I  R + I +GH   V+F QFS + +Y+ ++S D +A IW  D  G   L   L+GHQ  V    +S +   + T   +   R WD S      +Y   GL + +  W PD + + + +ND +  +W+L G+EL   +G     +   E + DG
Sbjct: 1486 DNTAGIWEIVGREVGICRGHEGPVYFAQFSADSRYILTASVDNTARIW--DFLGRPLL--TLAGHQSIVYQARFSPEGNLIATVSADHTARLWDRSGKTVAVLYGHQGL-VGTVDWSPDGQMLVTASNDGTARLWDLSGRELLTLEGHGNW-VRSAEFSPDG 1641          
BLAST of CX289194 vs. ExPASy Swiss-Prot
Match: TBL1X_MOUSE (F-box-like/WD repeat-containing protein TBL1X OS=Mus musculus GN=Tbl1x PE=2 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.249e-12
Identity = 41/133 (30.83%), Postives = 66/133 (49.62%), Query Frame = 2
Query:  176 RTLQILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWS---------SDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMW 547
            R ++  QGHT+EV  +++  +G  LAS S+D +  IW +  +  V   H L  H K +  + WS         + +  L +   +  VR WDV  G C+H   K    + S  + PD K++ SG+ DK + +W
Sbjct:  353 RPVKTFQGHTNEVNAIKWDPSGMLLASCSDDMTLKIWSMKQDACV---HDLQAHSKEIYTIKWSPTGPATSNPNSNIMLASASFDSTVRLWDVERGVCIHTLTKHQEPVYSVAFSPDGKYLASGSFDKCVHIW 482          
BLAST of CX289194 vs. ExPASy Swiss-Prot
Match: TBL1R_MOUSE (F-box-like/WD repeat-containing protein TBL1XR1 OS=Mus musculus GN=Tbl1xr1 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.632e-12
Identity = 43/143 (30.07%), Postives = 68/143 (47.55%), Query Frame = 2
Query:  146 HQCGRDQIPSRTLQILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWS---------SDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMW 547
            H C   Q   R ++  QGHT+EV  +++   G  LAS S+D +  IW +  +  V   H L  H K +  + WS         + +  L +   +  VR WDV  G C+H   K    + S  + PD +++ SG+ DK + +W
Sbjct:  332 HVCKLGQ--DRPIKTFQGHTNEVNAIKWDPTGNLLASCSDDMTLKIWSMKQDNCV---HDLQAHNKEIYTIKWSPTGPGTNNPNANLMLASASFDSTVRLWDVDRGICIHTLTKHQEPVYSVAFSPDGRYLASGSFDKCVHIW 469          
BLAST of CX289194 vs. ExPASy Swiss-Prot
Match: TBL1R_HUMAN (F-box-like/WD repeat-containing protein TBL1XR1 OS=Homo sapiens GN=TBL1XR1 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.632e-12
Identity = 43/143 (30.07%), Postives = 68/143 (47.55%), Query Frame = 2
Query:  146 HQCGRDQIPSRTLQILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWS---------SDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMW 547
            H C   Q   R ++  QGHT+EV  +++   G  LAS S+D +  IW +  +  V   H L  H K +  + WS         + +  L +   +  VR WDV  G C+H   K    + S  + PD +++ SG+ DK + +W
Sbjct:  332 HVCKLGQ--DRPIKTFQGHTNEVNAIKWDPTGNLLASCSDDMTLKIWSMKQDNCV---HDLQAHNKEIYTIKWSPTGPGTNNPNANLMLASASFDSTVRLWDVDRGICIHTLTKHQEPVYSVAFSPDGRYLASGSFDKCVHIW 469          
BLAST of CX289194 vs. ExPASy Swiss-Prot
Match: TB1RB_XENLA (F-box-like/WD repeat-containing protein TBL1XR1-B OS=Xenopus laevis GN=tbl1xr1-B PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.632e-12
Identity = 43/143 (30.07%), Postives = 68/143 (47.55%), Query Frame = 2
Query:  146 HQCGRDQIPSRTLQILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWS---------SDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMW 547
            H C   Q   R ++  QGHT+EV  +++   G  LAS S+D +  IW +  +   T  H L  H K +  + WS         + +  L +   +  VR WDV  G C+H   K    + S  + PD +++ SG+ DK + +W
Sbjct:  340 HVCKLGQ--DRPIKTFQGHTNEVNAIKWDPTGNLLASCSDDMTLKIWSMKHD---TCVHDLQAHNKEIYTIKWSPTGPGTNNPNANLMLASASFDSTVRLWDVDRGICIHTLTKHQEPVYSVAFSPDGRYLASGSFDKCVHIW 477          
BLAST of CX289194 vs. ExPASy Swiss-Prot
Match: TB1RA_XENLA (F-box-like/WD repeat-containing protein TBL1XR1-A OS=Xenopus laevis GN=tbl1xr1-A PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.632e-12
Identity = 43/143 (30.07%), Postives = 68/143 (47.55%), Query Frame = 2
Query:  146 HQCGRDQIPSRTLQILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWS---------SDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMW 547
            H C   Q   R ++  QGHT+EV  +++   G  LAS S+D +  IW +  +   T  H L  H K +  + WS         + +  L +   +  VR WDV  G C+H   K    + S  + PD +++ SG+ DK + +W
Sbjct:  337 HVCKLGQ--DRPIKTFQGHTNEVNAIKWDPTGNLLASCSDDMTLKIWSMKHD---TCVHDLQAHNKEIYTIKWSPTGPGTNNPNANLMLASASFDSTVRLWDVDRGICIHTLTKHQEPVYSVAFSPDGRYLASGSFDKCVHIW 474          
BLAST of CX289194 vs. ExPASy Swiss-Prot
Match: TUP11_SCHPO (Transcriptional repressor tup11 OS=Schizosaccharomyces pombe GN=tup11 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.131e-12
Identity = 43/147 (29.25%), Postives = 77/147 (52.38%), Query Frame = 2
Query:  113 SSDRDMSLYTDHQCGRDQIPSRTLQILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWEL 553
            + DR + L+       D    +   +  GH  +++ L FSHNG+++ S S DR+A +W+V+  G   LK ++   +  V+ ++ S +DQ +    +++ +R W V SG  +   E     + S  + PD   + SG+ DK+I +WEL
Sbjct:  379 TEDRQIKLW-------DLSTQKVRYVFSGHEQDIYSLDFSHNGRFIVSGSGDRTARLWDVE-TGQCILKLEI---ENGVTAIAISPNDQFIAVGSLDQIIRVWSV-SGTLVERLEGHKESVYSIAFSPDSSILLSGSLDKTIKVWEL 513          
BLAST of CX289194 vs. ExPASy Swiss-Prot
Match: TAF5_MOUSE (Transcription initiation factor TFIID subunit 5 OS=Mus musculus GN=Taf5 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.635e-12
Identity = 35/121 (28.93%), Postives = 61/121 (50.41%), Query Frame = 2
Query:  194 QGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELG 556
            +GH   VW  QFS  G Y  S  +DR A +W  D    + +    +GH   V+C  +  +   + T   +  VR WDV +GNC+ ++      + S  + P+ +++ +GA D  + +W++G
Sbjct:  583 KGHNYPVWDTQFSPYGYYFVSGGHDRVARLWATDHYQPLRI---FAGHLADVNCTRYHPNSNYVATGSADRTVRLWDVLNGNCVRIFTGHKGPIHSLTFSPNGRFLATGATDGRVLLWDIG 700          
The following BLAST results are available for this feature:
BLAST of CX289194 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
WDS_DROME5.609e-1333.33Protein will die slowly OS=Drosophila melanogaster... [more]
Y2800_ANASP7.325e-1328.08Uncharacterized WD repeat-containing protein alr28... [more]
Y163_SYNY37.325e-1330.25Uncharacterized WD repeat-containing protein sll01... [more]
TBL1X_MOUSE1.249e-1230.83F-box-like/WD repeat-containing protein TBL1X OS=M... [more]
TBL1R_MOUSE1.632e-1230.07F-box-like/WD repeat-containing protein TBL1XR1 OS... [more]
TBL1R_HUMAN1.632e-1230.07F-box-like/WD repeat-containing protein TBL1XR1 OS... [more]
TB1RB_XENLA1.632e-1230.07F-box-like/WD repeat-containing protein TBL1XR1-B ... [more]
TB1RA_XENLA1.632e-1230.07F-box-like/WD repeat-containing protein TBL1XR1-A ... [more]
TUP11_SCHPO2.131e-1229.25Transcriptional repressor tup11 OS=Schizosaccharom... [more]
TAF5_MOUSE3.635e-1228.93Transcription initiation factor TFIID subunit 5 OS... [more]

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Properties
Property NameValue
Genbank descriptionC02010C05SK IF1 Citrus clementina cDNA clone C02010C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289194 ID=CX289194; Name=CX289194; organism=Citrus clementina; type=EST; length=630bp
GGCTGCAGGGCAGAAACTGCTTCCCCCAATGATTATGATACCTGAAAGAA
GGTTGGAACATTTAGTTGAACAGGCCCTTGTCTTGCAACGAGAGGCTTGC
ATGTTTCACAATTCCTCGGACAGGGATATGTCATTGTACACTGATCATCA
GTGTGGAAGAGATCAAATTCCTTCTCGAACATTGCAGATATTACAAGGTC
ACACTGATGAAGTTTGGTTCTTGCAATTTTCACACAATGGGAAATATTTA
GCTTCATCATCCAACGACCGATCAGCAATCATTTGGGAGGTTGATCTTAA
TGGTGGAGTGACATTAAAGCATAAATTATCTGGTCACCAGAAGCCAGTTT
CCTGTGTTTCATGGAGCTCTGATGACCAACAGCTCCTCACTTGTGGAGTA
GAGGAGGCTGTTAGGCGCTGGGATGTGTCTTCTGGCAATTGTCTCCATGT
TTATGAAAAAGCGGGCCTTGGCCTGGTGTCTTGTGGATGGCATCCAGACA
GAAAATGGATATTTTCTGGTGCCAATGATAAGAGTATCTGCATGTGGGAA
CTAGGTGGAAAAGAGCTAGAGTGTTGGAAAGGCCAACGAACTTTAAAGAT
TTCTGATTTGGAAGTAACGAGTGATGGGAA
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