CX289194

Overview
NameCX289194
Unique NameCX289194
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length630
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289194 vs. ExPASy Swiss-Prot
Match: TAF5_HUMAN (Transcription initiation factor TFIID subunit 5 OS=Homo sapiens GN=TAF5 PE=1 SV=3)

HSP 1 Score: 71.2478 bits (173), Expect = 4.748e-12
Identity = 35/121 (28.93%), Postives = 61/121 (50.41%), Query Frame = 2
Query:  194 QGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELG 556
            +GH   VW  QFS  G Y  S  +DR A +W  D    + +    +GH   V+C  +  +   + T   +  VR WDV +GNC+ ++      + S  + P+ +++ +GA D  + +W++G
Sbjct:  582 KGHNYPVWDTQFSPYGYYFVSGGHDRVARLWATDHYQPLRI---FAGHLADVNCTRFHPNSNYVATGSADRTVRLWDVLNGNCVRIFTGHKGPIHSLTFSPNGRFLATGATDGRVLLWDIG 699          
BLAST of CX289194 vs. ExPASy Swiss-Prot
Match: TUP1_DICDI (General transcriptional corepressor tupA OS=Dictyostelium discoideum GN=tupA PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.201e-12
Identity = 38/122 (31.15%), Postives = 67/122 (54.92%), Query Frame = 2
Query:  197 GHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNG-GVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGG 559
            GH  +++ L +S +G+++ S S D+ A IW+++      TL ++  G +  V+ V+ S D + +    ++  VR WD  +G  L  YE     + S  + PD K + SG+ DKS+ +W+L G
Sbjct:  367 GHELDIYSLDYSSDGRFIVSGSGDKKAKIWDIEKGKCAFTLGNEEVGPKNGVTSVAMSPDGRLVAAGSLDNIVRLWDAQTGYFLERYEGHLDSVYSVAFSPDGKSLASGSLDKSLKLWDLSG 488          
BLAST of CX289194 vs. ExPASy Swiss-Prot
Match: TUP12_SCHPO (Transcriptional repressor tup12 OS=Schizosaccharomyces pombe GN=tup12 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.201e-12
Identity = 44/134 (32.84%), Postives = 71/134 (52.99%), Query Frame = 2
Query:  161 DQIPSRTLQILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNC---LHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWEL 553
            D    R  ++L GH  E++ L FS +GK L S S DR+  +W+V+      + H   G    V+ V +S D Q +    +++ +R W  SSG     LH +E++   + S  + PD K++ SG+ D +I +WEL
Sbjct:  362 DIAQKRVYRLLTGHEQEIYSLDFSKDGKTLVSGSGDRTVCLWDVEAGEQKLILHTDDG----VTTVMFSPDGQFIAAGSLDKVIRIW-TSSGTLVEQLHGHEES---VYSVAFSPDGKYLVSGSLDNTIKLWEL 487          
BLAST of CX289194 vs. ExPASy Swiss-Prot
Match: CIAO1_IXOSC (Probable cytosolic iron-sulfur protein assembly protein OS=Ixodes scapularis GN=ISCW023049 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.201e-12
Identity = 42/135 (31.11%), Postives = 70/135 (51.85%), Query Frame = 2
Query:  182 LQILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAV---RRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELG-GKELEC 574
            L  L+GH D VW + ++ +G  LAS   D+S  +W ++    V     L GHQ+ V  VSWS+  + L +   +      RR D +  +C    E     + +CGW P  +++ + + DK++ +WE+G  +E EC
Sbjct:    6 LSDLEGHEDRVWNVAWNPSGTILASCGGDKSIRLWGLEGGSWVCKSVLLDGHQRTVRGVSWSNCGRYLASSSFDGTTCIWRRQDDTFESCA-TLEGHENEVKACGWSPSGRFLATCSRDKTVWIWEVGEDEEFEC 139          
BLAST of CX289194 vs. ExPASy Swiss-Prot
Match: CIAO1_CHLRE (Probable cytosolic iron-sulfur protein assembly protein CIAO1 homolog OS=Chlamydomonas reinhardtii GN=CHLREDRAFT_130093 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.201e-12
Identity = 40/131 (30.53%), Postives = 67/131 (51.15%), Query Frame = 2
Query:  194 QGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLK-HKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSG---NCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKELEC 574
            Q HT  +  + +S  G+ LA++S D +  +WE  L+ GV  +  +L GH+  V CV+W+ D + + TCG + +V  W+   G    C+ V +     + +  WHP  + + S   D +I +W   G E  C
Sbjct:   62 QCHTRTIRSVAWSPTGRALATASFDATVAVWE--LSSGVWEQVAELEGHENEVKCVAWNPDGRLIATCGRDRSVWIWESMPGREFECVDVKQGHSQDVKAVTWHPSGELLVSAGYDDTIKLWTYDGDEWGC 190          
BLAST of CX289194 vs. ExPASy Swiss-Prot
Match: KTNB1_STRPU (Katanin p80 WD40-containing subunit B1 OS=Strongylocentrotus purpuratus GN=KATNB1 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.099e-12
Identity = 32/131 (24.43%), Postives = 69/131 (52.67%), Query Frame = 2
Query:  161 DQIPSRTLQILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWEL 553
            D  P++ ++ L GH + +  + F   G+++AS S D +  +W+V   G +   +   GH   V+ + +S D + L+T   +  ++ WD++ G     ++    G+    +HP+   + SG++D+++  W+L
Sbjct:   87 DLEPAKIVRTLTGHRNSIRCMDFHPFGEFVASGSTDTNVKLWDVRRKGCI---YTYKGHSDQVNMIKFSPDGKWLVTASEDTTIKLWDLTMGKLFQEFKNHTGGVTGIEFHPNEFLLASGSSDRTVQFWDL 214          
BLAST of CX289194 vs. ExPASy Swiss-Prot
Match: WDR69_RAT (WD repeat-containing protein 69 OS=Rattus norvegicus GN=Wdr69 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.381e-11
Identity = 38/129 (29.46%), Postives = 65/129 (50.39%), Query Frame = 2
Query:  161 DQIPSRTLQILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMW 547
            D    + +  L GH DE+    F + GK +A++S D +A ++       +T   KL GH+  +S +S++    +LLT   ++  R WDV +G CL V E     + SC ++     + +G+ D S  +W
Sbjct:  289 DATSGKCVATLTGHDDEILDSCFDYTGKLIATASADGTARVYNATTRKCIT---KLEGHEGEISKISFNPQGNRLLTGSSDKTARIWDVQTGQCLQVLEGHTDEIFSCAFNYKGNIVITGSKDNSCRIW 414          
BLAST of CX289194 vs. ExPASy Swiss-Prot
Match: TBL1Y_HUMAN (F-box-like/WD repeat-containing protein TBL1Y OS=Homo sapiens GN=TBL1Y PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.381e-11
Identity = 40/131 (30.53%), Postives = 63/131 (48.09%), Query Frame = 2
Query:  182 LQILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWS---------SDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMW 547
            ++  QGHT+EV  +++  +G  LAS S+D +  IW +  +  V   H L  H K +  + WS         +    L +   +  VR WDV  G C H   K    + S  + PD K++ SG+ DK + +W
Sbjct:  352 VKTFQGHTNEVNAIKWDPSGMLLASCSDDMTLKIWSMKQDACV---HDLQAHSKEIYTIKWSPTGPATSNPNSSIMLASASFDSTVRLWDVEQGVCTHTLMKHQEPVYSVAFSPDGKYLASGSFDKYVHIW 479          
BLAST of CX289194 vs. ExPASy Swiss-Prot
Match: TBL1X_HUMAN (F-box-like/WD repeat-containing protein TBL1X OS=Homo sapiens GN=TBL1X PE=1 SV=3)

HSP 1 Score: 69.707 bits (169), Expect = 1.381e-11
Identity = 39/133 (29.32%), Postives = 64/133 (48.12%), Query Frame = 2
Query:  176 RTLQILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWS---------SDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMW 547
            R ++  QGHT+EV  +++  +G  LAS S+D +  IW +     +   H L  H K +  + WS         + +  L +   +  VR WD+  G C H   K    + S  + PD K++ SG+ DK + +W
Sbjct:  403 RPVKTFQGHTNEVNAIKWDPSGMLLASCSDDMTLKIWSMKQEVCI---HDLQAHNKEIYTIKWSPTGPATSNPNSNIMLASASFDSTVRLWDIERGVCTHTLTKHQEPVYSVAFSPDGKYLASGSFDKCVHIW 532          
BLAST of CX289194 vs. ExPASy Swiss-Prot
Match: EBI_DROME (F-box-like/WD repeat-containing protein ebi OS=Drosophila melanogaster GN=ebi PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.381e-11
Identity = 48/180 (26.67%), Postives = 83/180 (46.11%), Query Frame = 2
Query:  104 FHNSSDRDMSLYTDH---QCGRDQI-------PSRTLQILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWS---------SDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWEL-GGKELECWKG 583
            FH++   D+   T+     C  DQ         +  ++  +GHT+EV  +++   G+ LAS S+D +  IW ++ +      H L  H K +  + WS         + +  L +   +  VR WDV  G+C+H   K    + S  + PD K + SG+ DK + +W    G+ +  +KG
Sbjct:  491 FHSAPALDVDWQTNQAFASCSTDQRIHVCRLGVNEPIKTFKGHTNEVNAIKWCPQGQLLASCSDDMTLKIWSMNRD---RCCHDLQAHSKEIYTIKWSPTGPGTNNPNTNLILASASFDSTVRLWDVERGSCIHTLTKHTEPVYSVAFSPDGKHLASGSFDKCVHIWSTQTGQLVHSYKG 667          
The following BLAST results are available for this feature:
BLAST of CX289194 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
TAF5_HUMAN4.748e-1228.93Transcription initiation factor TFIID subunit 5 OS... [more]
TUP1_DICDI6.201e-1231.15General transcriptional corepressor tupA OS=Dictyo... [more]
TUP12_SCHPO6.201e-1232.84Transcriptional repressor tup12 OS=Schizosaccharom... [more]
CIAO1_IXOSC6.201e-1231.11Probable cytosolic iron-sulfur protein assembly pr... [more]
CIAO1_CHLRE6.201e-1230.53Probable cytosolic iron-sulfur protein assembly pr... [more]
KTNB1_STRPU8.099e-1224.43Katanin p80 WD40-containing subunit B1 OS=Strongyl... [more]
WDR69_RAT1.381e-1129.46WD repeat-containing protein 69 OS=Rattus norvegic... [more]
TBL1Y_HUMAN1.381e-1130.53F-box-like/WD repeat-containing protein TBL1Y OS=H... [more]
TBL1X_HUMAN1.381e-1129.32F-box-like/WD repeat-containing protein TBL1X OS=H... [more]
EBI_DROME1.381e-1126.67F-box-like/WD repeat-containing protein ebi OS=Dro... [more]

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Properties
Property NameValue
Genbank descriptionC02010C05SK IF1 Citrus clementina cDNA clone C02010C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289194 ID=CX289194; Name=CX289194; organism=Citrus clementina; type=EST; length=630bp
GGCTGCAGGGCAGAAACTGCTTCCCCCAATGATTATGATACCTGAAAGAA
GGTTGGAACATTTAGTTGAACAGGCCCTTGTCTTGCAACGAGAGGCTTGC
ATGTTTCACAATTCCTCGGACAGGGATATGTCATTGTACACTGATCATCA
GTGTGGAAGAGATCAAATTCCTTCTCGAACATTGCAGATATTACAAGGTC
ACACTGATGAAGTTTGGTTCTTGCAATTTTCACACAATGGGAAATATTTA
GCTTCATCATCCAACGACCGATCAGCAATCATTTGGGAGGTTGATCTTAA
TGGTGGAGTGACATTAAAGCATAAATTATCTGGTCACCAGAAGCCAGTTT
CCTGTGTTTCATGGAGCTCTGATGACCAACAGCTCCTCACTTGTGGAGTA
GAGGAGGCTGTTAGGCGCTGGGATGTGTCTTCTGGCAATTGTCTCCATGT
TTATGAAAAAGCGGGCCTTGGCCTGGTGTCTTGTGGATGGCATCCAGACA
GAAAATGGATATTTTCTGGTGCCAATGATAAGAGTATCTGCATGTGGGAA
CTAGGTGGAAAAGAGCTAGAGTGTTGGAAAGGCCAACGAACTTTAAAGAT
TTCTGATTTGGAAGTAACGAGTGATGGGAA
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