CX289194

Overview
NameCX289194
Unique NameCX289194
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length630
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289194 vs. ExPASy Swiss-Prot
Match: APAF_RAT (Apoptotic protease-activating factor 1 OS=Rattus norvegicus GN=Apaf1 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.381e-11
Identity = 35/128 (27.34%), Postives = 69/128 (53.91%), Query Frame = 2
Query:  188 ILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGW--HPDRKWIFSGANDKSICMWELGGKE 565
            +++ HTD V+   FS +G+ +AS   D++  +++ +    +     +  H+  V C ++SSDD  + TC V++ V+ WD  +G  +H YE+    +  C +    +   + +G+ND  + +W+L  KE
Sbjct:  610 VVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLL---DIKAHEDEVLCCAFSSDDSYIATCSVDKKVKIWDSGTGKLVHTYEEHSEQVNCCHFTNKSNHLLLATGSNDSFLKLWDLNQKE 734          
BLAST of CX289194 vs. ExPASy Swiss-Prot
Match: YZLL_CAEEL (Uncharacterized WD repeat-containing protein K04G11.4 OS=Caenorhabditis elegans GN=K04G11.4 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.356e-11
Identity = 37/121 (30.58%), Postives = 66/121 (54.55%), Query Frame = 2
Query:  185 QILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMW 547
            +I   H   +  ++FS +G+Y+ S S D S  IW +D       +  L GH+  ++  SWSSD + +++C  ++ V+ +DVSSG C+   +     +  C ++P    I SG+ D++I +W
Sbjct:  101 EIPNAHKKSISGIKFSPDGRYMGSGSADCSIKIWRMDF----VYEKTLMGHRLGINEFSWSSDSKLIVSCSDDKLVKVFDVSSGRCVKTLKGHTNYVFCCCFNPSGTLIASGSFDETIRIW 217          
BLAST of CX289194 vs. ExPASy Swiss-Prot
Match: TAF5_ENCCU (Transcription initiation factor TFIID subunit 5 OS=Encephalitozoon cuniculi GN=TAF5 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.356e-11
Identity = 42/123 (34.15%), Postives = 64/123 (52.03%), Query Frame = 2
Query:   95 ACMFHNSSDRDMSLYTDHQCGRDQIPSRTL-QILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVS--SGNCLHVY 454
            A  FH +S    +  +DH+     I + ++ +I  GHTD V  +  SH GK+LAS S DR+ ++W++  +    L  K  GH+  V  VS+      L +CG + +VR WD +   G CL  Y
Sbjct:  411 AVKFHPNSSYLFTGSSDHRVRMHDISTASVVRIFCGHTDTVTCMDVSHCGKFLASGSKDRTVLLWDIQSS---KLLGKYVGHENTVFSVSFCFYGSVLASCGADNSVRLWDRTDHKGGCLGTY 530          
BLAST of CX289194 vs. ExPASy Swiss-Prot
Match: PFS2_ASHGO (Polyadenylation factor subunit 2 OS=Ashbya gossypii GN=PSF2 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.356e-11
Identity = 37/121 (30.58%), Postives = 59/121 (48.76%), Query Frame = 2
Query:  188 ILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWE 550
            I+Q H   V  +Q+SH G +L S   D +  IW+ + N    L      H + +  +S+S  DQ+ +TC  +  ++ W+ S+G    V       + SC WHP    I SG+ D  I +W+
Sbjct:  116 IMQAHDSAVTVMQYSHAGDWLISGDADGTIKIWQPNFNMVKVLDR---AHTECMRDISFSYSDQKFVTCSDDNVLKIWNFSNGQQERVLSGHHWDVKSCDWHPKMGLIVSGSKDNLIKLWD 233          
BLAST of CX289194 vs. ExPASy Swiss-Prot
Match: GBLP_SCHPO (Guanine nucleotide-binding protein subunit beta-like protein OS=Schizosaccharomyces pombe GN=rkp1 PE=1 SV=3)

HSP 1 Score: 68.9366 bits (167), Expect = 2.356e-11
Identity = 41/127 (32.28%), Postives = 66/127 (51.97%), Query Frame = 2
Query:  191 LQGHTDEVWFLQFS-HNGKYLASSSNDRSAIIWEV---DLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGG 559
            L+GH+  V  L  +  N   L S S D+S I+W +   D+N GV  + +L+GH   VS  + S D    L+   ++ +R WD+  G C H +      ++S    PD + + SG+ DK+I +W + G
Sbjct:   11 LEGHSGWVTSLSTAPENPDILLSGSRDKSIILWNLVRDDVNYGVA-QRRLTGHSHFVSDCALSFDSHYALSASWDKTIRLWDLEKGECTHQFVGHTSDVLSVSISPDNRQVVSGSRDKTIKIWNIIG 136          
BLAST of CX289194 vs. ExPASy Swiss-Prot
Match: TBL1X_MACFA (F-box-like/WD repeat-containing protein TBL1X OS=Macaca fascicularis GN=TBL1X PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.078e-11
Identity = 38/133 (28.57%), Postives = 64/133 (48.12%), Query Frame = 2
Query:  176 RTLQILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWS---------SDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMW 547
            R ++  QGHT+EV  +++  +G  LAS S+D +  IW +     +   H L  H K +  + WS         + +  L +   +  VR WD+  G C H   K    + S  + PD +++ SG+ DK + +W
Sbjct:  395 RPVKTFQGHTNEVNAIKWDPSGMLLASCSDDMTLKIWSMKQEVCI---HDLQAHNKEIYTIKWSPTGPATSNPNSNIMLASASFDSTVRLWDIERGVCTHTLTKHQEPVYSVAFSPDGRYLASGSFDKCVHIW 524          
BLAST of CX289194 vs. ExPASy Swiss-Prot
Match: WDR69_BOVIN (WD repeat-containing protein 69 OS=Bos taurus GN=WDR69 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.019e-11
Identity = 39/129 (30.23%), Postives = 65/129 (50.39%), Query Frame = 2
Query:  161 DQIPSRTLQILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMW 547
            D +  + +  L GH DE+    F + GK +A++S D +A I+       VT   KL GH+  +S +S++    +LLT   ++  R WD  +G CL V E     + SC ++     I +G+ D +  +W
Sbjct:  289 DAVNGKCVATLTGHDDEILDSCFDYTGKLIATASADGTARIFSAATRECVT---KLEGHEGEISKISFNPQGNRLLTGSSDKTARIWDAQTGQCLQVLEGHTDEIFSCAFNYKGDIIITGSKDNTCRIW 414          
BLAST of CX289194 vs. ExPASy Swiss-Prot
Match: TAF5L_HUMAN (TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L OS=Homo sapiens GN=TAF5L PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.250e-11
Identity = 36/127 (28.35%), Postives = 60/127 (47.24%), Query Frame = 2
Query:  188 ILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKEL 568
            + QGH   VW L  S    Y AS S+DR+A +W  D    + +    +GH   V CV +  +   L T   ++ VR W    GN + ++      ++S  + P+ K++ S   D+ + +W+L    L
Sbjct:  379 LYQGHAYPVWDLDISPYSLYFASGSHDRTARLWSFDRTYPLRI---YAGHLADVDCVKFHPNSNYLATGSTDKTVRLWSAQQGNSVRLFTGHRGPVLSLAFSPNGKYLASAGEDQRLKLWDLASGTL 502          
BLAST of CX289194 vs. ExPASy Swiss-Prot
Match: PFS2_KLULA (Polyadenylation factor subunit 2 OS=Kluyveromyces lactis GN=PFS2 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.250e-11
Identity = 36/121 (29.75%), Postives = 58/121 (47.93%), Query Frame = 2
Query:  188 ILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWE 550
            I+Q H   V  + +SH G ++ S S D    IW+ + N    +K     H + V  +S+S  DQ+ ++C  +  ++ W+ S+G    V       + SC WHP    I SG+ D  I  W+
Sbjct:  118 IMQAHDSAVTVMTYSHTGDWMVSGSADGELKIWQPNFN---MVKVMDQAHMECVREISFSPTDQKFVSCSDDNVLKIWNFSNGQQERVLSGHHWDVKSCDWHPKMGLIVSGSKDNLIKFWD 235          
BLAST of CX289194 vs. ExPASy Swiss-Prot
Match: Y143_SYNY3 (Uncharacterized WD repeat-containing protein slr0143 OS=Synechocystis sp. (strain PCC 6803) GN=slr0143 PE=4 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.856e-11
Identity = 41/126 (32.54%), Postives = 61/126 (48.41%), Query Frame = 2
Query:  182 LQILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGG 559
            L+   GHT  ++ + FS NGK  A++  D++  IW++D N    L   L GHQ  V  VS+S D + L +   +  VR W   SG  L V       +    + PD + + S   D  I +W+L G
Sbjct:  594 LREFTGHTGSIYRVDFSPNGKIFATAGQDQTVKIWDLDGN----LLQTLKGHQDSVYSVSFSPDGEILASTSRDRTVRLWHWRSGKTLAVLGGHTKSVDDAQFSPDGQTLVSVCRDGQIRLWDLDG 715          
The following BLAST results are available for this feature:
BLAST of CX289194 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
APAF_RAT1.381e-1127.34Apoptotic protease-activating factor 1 OS=Rattus n... [more]
YZLL_CAEEL2.356e-1130.58Uncharacterized WD repeat-containing protein K04G1... [more]
TAF5_ENCCU2.356e-1134.15Transcription initiation factor TFIID subunit 5 OS... [more]
PFS2_ASHGO2.356e-1130.58Polyadenylation factor subunit 2 OS=Ashbya gossypi... [more]
GBLP_SCHPO2.356e-1132.28Guanine nucleotide-binding protein subunit beta-li... [more]
TBL1X_MACFA3.078e-1128.57F-box-like/WD repeat-containing protein TBL1X OS=M... [more]
WDR69_BOVIN4.019e-1130.23WD repeat-containing protein 69 OS=Bos taurus GN=W... [more]
TAF5L_HUMAN5.250e-1128.35TAF5-like RNA polymerase II p300/CBP-associated fa... [more]
PFS2_KLULA5.250e-1129.75Polyadenylation factor subunit 2 OS=Kluyveromyces ... [more]
Y143_SYNY36.856e-1132.54Uncharacterized WD repeat-containing protein slr01... [more]

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Properties
Property NameValue
Genbank descriptionC02010C05SK IF1 Citrus clementina cDNA clone C02010C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289194 ID=CX289194; Name=CX289194; organism=Citrus clementina; type=EST; length=630bp
GGCTGCAGGGCAGAAACTGCTTCCCCCAATGATTATGATACCTGAAAGAA
GGTTGGAACATTTAGTTGAACAGGCCCTTGTCTTGCAACGAGAGGCTTGC
ATGTTTCACAATTCCTCGGACAGGGATATGTCATTGTACACTGATCATCA
GTGTGGAAGAGATCAAATTCCTTCTCGAACATTGCAGATATTACAAGGTC
ACACTGATGAAGTTTGGTTCTTGCAATTTTCACACAATGGGAAATATTTA
GCTTCATCATCCAACGACCGATCAGCAATCATTTGGGAGGTTGATCTTAA
TGGTGGAGTGACATTAAAGCATAAATTATCTGGTCACCAGAAGCCAGTTT
CCTGTGTTTCATGGAGCTCTGATGACCAACAGCTCCTCACTTGTGGAGTA
GAGGAGGCTGTTAGGCGCTGGGATGTGTCTTCTGGCAATTGTCTCCATGT
TTATGAAAAAGCGGGCCTTGGCCTGGTGTCTTGTGGATGGCATCCAGACA
GAAAATGGATATTTTCTGGTGCCAATGATAAGAGTATCTGCATGTGGGAA
CTAGGTGGAAAAGAGCTAGAGTGTTGGAAAGGCCAACGAACTTTAAAGAT
TTCTGATTTGGAAGTAACGAGTGATGGGAA
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