CX289194

Overview
NameCX289194
Unique NameCX289194
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length630
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289194 vs. ExPASy Swiss-Prot
Match: WDR38_MOUSE (WD repeat-containing protein 38 OS=Mus musculus GN=Wdr38 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.856e-11
Identity = 42/144 (29.17%), Postives = 71/144 (49.31%), Query Frame = 2
Query:  200 HTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWEL-GGKELECWKGQ-RTLKISDLEVTSD 625
            H  EV    FS +G+ L ++S+D    +W         L  +L+GH+ PV    +S D + + +   + ++R WDV+   CLHV +     + +  + PD K + SG  DK   +WE+  G+ +    G   +++ SD   TSD
Sbjct:   25 HHGEVNCSAFSPDGRTLLTASDDGCVYVWGTKSG---RLLWRLAGHRGPVKSCCFSPDGRLIASSSSDHSIRLWDVARSKCLHVLKGHQRSVETVSFSPDSKQLASGGWDKRAIVWEVQSGRRVHLLVGHCDSIQSSDFSPTSD 165          
BLAST of CX289194 vs. ExPASy Swiss-Prot
Match: PKWA_THECU (Probable serine/threonine-protein kinase pkwA OS=Thermomonospora curvata GN=pkwA PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.954e-11
Identity = 40/127 (31.50%), Postives = 68/127 (53.54%), Query Frame = 2
Query:  188 ILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWS-SDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWELGGKE 565
            +L+GHTD V+ + FS +G  +AS S D +  +W+V      T K +        + VS + S D  +L  G +  V  WDV+SG  LH +E     + +  + PD   + SG++D++I +W++  +E
Sbjct:  580 VLKGHTDYVYAVAFSPDGSMVASGSRDGTIRLWDV-----ATGKERDVLQAPAENVVSLAFSPDGSMLVHGSDSTVHLWDVASGEALHTFEGHTDWVRAVAFSPDGALLASGSDDRTIRLWDVAAQE 701          
BLAST of CX289194 vs. ExPASy Swiss-Prot
Match: KTNB1_DANRE (Katanin p80 WD40-containing subunit B1 OS=Danio rerio GN=katnb1 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.954e-11
Identity = 35/127 (27.56%), Postives = 66/127 (51.97%), Query Frame = 2
Query:  173 SRTLQILQGHTDEVWFLQFSHNGKYLASSSNDRSAIIWEVDLNGGVTLKHKLSGHQKPVSCVSWSSDDQQLLTCGVEEAVRRWDVSSGNCLHVYEKAGLGLVSCGWHPDRKWIFSGANDKSICMWEL 553
            ++ L+ L GH   +  L F   G+YLAS S D +  +W+V   G V    +  GH + V C+++S D + L +   +  V+ WD+ +G  +  +      +    +HP+   + SG+ D+++ +W+L
Sbjct:   95 AKILRTLMGHKASISSLDFHPMGEYLASGSVDSNIKLWDVRRKGCV---FRYKGHTQAVRCLAFSPDGKWLASASDDSTVKLWDLIAGKMITEFTSHTSAVNVVQFHPNEYLLASGSADRTVKLWDL 218          
The following BLAST results are available for this feature:
BLAST of CX289194 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
WDR38_MOUSE6.856e-1129.17WD repeat-containing protein 38 OS=Mus musculus GN... [more]
PKWA_THECU8.954e-1131.50Probable serine/threonine-protein kinase pkwA OS=T... [more]
KTNB1_DANRE8.954e-1127.56Katanin p80 WD40-containing subunit B1 OS=Danio re... [more]

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Properties
Property NameValue
Genbank descriptionC02010C05SK IF1 Citrus clementina cDNA clone C02010C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289194 ID=CX289194; Name=CX289194; organism=Citrus clementina; type=EST; length=630bp
GGCTGCAGGGCAGAAACTGCTTCCCCCAATGATTATGATACCTGAAAGAA
GGTTGGAACATTTAGTTGAACAGGCCCTTGTCTTGCAACGAGAGGCTTGC
ATGTTTCACAATTCCTCGGACAGGGATATGTCATTGTACACTGATCATCA
GTGTGGAAGAGATCAAATTCCTTCTCGAACATTGCAGATATTACAAGGTC
ACACTGATGAAGTTTGGTTCTTGCAATTTTCACACAATGGGAAATATTTA
GCTTCATCATCCAACGACCGATCAGCAATCATTTGGGAGGTTGATCTTAA
TGGTGGAGTGACATTAAAGCATAAATTATCTGGTCACCAGAAGCCAGTTT
CCTGTGTTTCATGGAGCTCTGATGACCAACAGCTCCTCACTTGTGGAGTA
GAGGAGGCTGTTAGGCGCTGGGATGTGTCTTCTGGCAATTGTCTCCATGT
TTATGAAAAAGCGGGCCTTGGCCTGGTGTCTTGTGGATGGCATCCAGACA
GAAAATGGATATTTTCTGGTGCCAATGATAAGAGTATCTGCATGTGGGAA
CTAGGTGGAAAAGAGCTAGAGTGTTGGAAAGGCCAACGAACTTTAAAGAT
TTCTGATTTGGAAGTAACGAGTGATGGGAA
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