CX289199

Overview
NameCX289199
Unique NameCX289199
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length520
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10259 contig Ccv1_Contig10259:245..764. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX289199 vs. ExPASy Swiss-Prot
Match: RL5_CAEBR (60S ribosomal protein L5 OS=Caenorhabditis briggsae GN=rpl-5 PE=3 SV=2)

HSP 1 Score: 186.422 bits (472), Expect = 6.765e-47
Identity = 88/173 (50.87%), Postives = 121/173 (69.94%), Query Frame = 2
Query:    2 QIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDADGL 520
            Q+  + I GD V+A+AYAHELPRYGL+ GLTNYAAAY TGLLLARR LK + +D  Y+G+ E TGEDY+VE    R PF+A+LD+GL +TTTG+++F            +PHS+ RF GF ++ K  +AE HR  I G HVA YMS L E++ ++Y+  F++++  G++AD L
Sbjct:   63 QLAYSKIEGDVVVASAYAHELPRYGLKAGLTNYAAAYATGLLLARRHLKAIGLDSTYKGHEELTGEDYNVEEEGDRAPFKAVLDIGLARTTTGSKIFAVMKGVADGGINVPHSESRFFGFDQESKDYNAEAHRDRILGKHVADYMSLLKEEDEDRYKRQFSKFLSNGMNADNL 235          
BLAST of CX289199 vs. ExPASy Swiss-Prot
Match: RL5_CHICK (60S ribosomal protein L5 OS=Gallus gallus GN=RPL5 PE=2 SV=2)

HSP 1 Score: 186.037 bits (471), Expect = 8.836e-47
Identity = 92/174 (52.87%), Postives = 118/174 (67.82%), Query Frame = 2
Query:    2 QIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTR-RPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDADGL 520
            QI  A I GD ++ AAYAHELP+YG++VGLTNYAAAYCTGLLLARR+L    +D  YEG VE TG++Y+VE  D +   F   LD GL +TTTGN+VF            IPHS KRF G+  + K+ +AEVHRK+I G +VA YM  LME++ + Y+  F++YIK  I  DG+
Sbjct:   63 QIAYARIEGDMIVCAAYAHELPKYGVKVGLTNYAAAYCTGLLLARRLLNKFGLDKIYEGQVEVTGDEYNVESVDGKPGAFTCYLDAGLARTTTGNKVFGALKGAVDGGLSIPHSTKRFPGYDSESKEFNAEVHRKHIMGQNVADYMRYLMEEDEDAYKKQFSQYIKNNITPDGM 236          
BLAST of CX289199 vs. ExPASy Swiss-Prot
Match: RL5_CAEEL (60S ribosomal protein L5 OS=Caenorhabditis elegans GN=rpl-5 PE=2 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 1.154e-46
Identity = 87/173 (50.29%), Postives = 123/173 (71.10%), Query Frame = 2
Query:    2 QIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDADGL 520
            Q+  + I GD V+A+AY+HELPRYGL+VGLTNYAAAY TGLLLARR LK + +D  Y+G+ E TGEDY+VE    R PF+A+LD+GL +TTTG+++F            +PHS+ RF GF ++ K+ +AE HR  I G HVA YM+ L E++ ++Y+  F++++  G++AD L
Sbjct:   63 QLAYSKIEGDVVVASAYSHELPRYGLKVGLTNYAAAYATGLLLARRHLKTIGLDSTYKGHEELTGEDYNVEEEGDRAPFKAVLDIGLARTTTGSKIFAVMKGVADGGINVPHSESRFFGFDQESKEYNAEAHRDRILGKHVADYMTYLKEEDEDRYKRQFSKFLAAGLNADNL 235          
BLAST of CX289199 vs. ExPASy Swiss-Prot
Match: RL5_DROME (60S ribosomal protein L5 OS=Drosophila melanogaster GN=RpL5 PE=1 SV=2)

HSP 1 Score: 184.882 bits (468), Expect = 1.968e-46
Identity = 95/174 (54.60%), Postives = 118/174 (67.82%), Query Frame = 2
Query:    2 QIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADT-RRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDADGL 520
            QI  A I GD V+ AAY+HELP+YG++VGLTNYAAAYCTGLL+ARRVL  L +D  Y G  E TGE+++VEP D     FR  LDVGL +TTTG RVF            IPHS KRF G+S + K  +A+VHR +I+G HVA YM +L E++ E ++  F+ YIK GI AD L
Sbjct:   63 QIAYARIEGDRVVCAAYSHELPKYGIQVGLTNYAAAYCTGLLVARRVLNKLGLDSLYAGCTEVTGEEFNVEPVDDGPGAFRCFLDVGLARTTTGARVFGAMKGAVDGGLNIPHSVKRFPGYSAETKSFNADVHRAHIFGQHVADYMRSLEEEDEESFKRQFSRYIKLGIRADDL 236          
BLAST of CX289199 vs. ExPASy Swiss-Prot
Match: RL5_AEDAE (60S ribosomal protein L5 OS=Aedes aegypti GN=RpL5 PE=2 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 1.968e-46
Identity = 93/174 (53.45%), Postives = 118/174 (67.82%), Query Frame = 2
Query:    2 QIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADT-RRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDADGL 520
            QI  A I GD ++ AAY+HELPRYG++VGLTNYAAAYCTGLL+ARR+L+ L +D  Y G  + TGE+Y VEP D     FR  LDVGL +TTTG R+F            IPHS KRF G+S + K  +AEVHR +I+G HVA YM TL E++ + Y+  F++YI  GI AD +
Sbjct:   63 QIAYARIEGDRIVCAAYSHELPRYGVKVGLTNYAAAYCTGLLVARRILQKLRLDTLYTGCTDVTGEEYLVEPVDDGPGAFRCYLDVGLARTTTGARIFGAMKGAVDGGLNIPHSVKRFPGYSAENKSFNAEVHRAHIFGQHVADYMRTLEEEDEDAYKRQFSKYIALGIKADDI 236          
BLAST of CX289199 vs. ExPASy Swiss-Prot
Match: RL5B_XENLA (60S ribosomal protein L5-B OS=Xenopus laevis GN=rpl5-B PE=2 SV=2)

HSP 1 Score: 184.496 bits (467), Expect = 2.571e-46
Identity = 90/174 (51.72%), Postives = 117/174 (67.24%), Query Frame = 2
Query:    2 QIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTR-RPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDADGL 520
            QI  A I GD ++ AAYAHELP+YG++VGLTNYAAAYCTGLLLARR+L    +D  YEG VE TG++Y+VE  D     F   LD GL +TTTGN+VF            IPHS KRF G+  + K+ + EVHRK+I+  ++A YM  LME++ + Y+  F++YIK G+ AD L
Sbjct:   63 QIAYARIEGDMIVCAAYAHELPKYGVKVGLTNYAAAYCTGLLLARRLLNKFGLDKVYEGQVEVTGDEYNVESVDGEPGAFTCYLDAGLTRTTTGNKVFGALKGAVDGGLSIPHSTKRFPGYDSESKEFNPEVHRKHIFAQNIAEYMRLLMEEDEDAYKKQFSQYIKNGVAADQL 236          
BLAST of CX289199 vs. ExPASy Swiss-Prot
Match: RL5A_XENLA (60S ribosomal protein L5-A OS=Xenopus laevis GN=rpl5-A PE=2 SV=2)

HSP 1 Score: 184.496 bits (467), Expect = 2.571e-46
Identity = 90/172 (52.33%), Postives = 116/172 (67.44%), Query Frame = 2
Query:    2 QIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTR-RPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDAD 514
            QI  A I GD ++ AAYAHELP+YG++VGLTNYAAAYCTGLLLARR+L    +D  YEG VE TG++Y+VE  D     F   LD GL +TTTGN+VF            IPHS KRF G+  + K+ + EVHRK+I+  +VA YM  LME++ + Y+  F++YIK G+ AD
Sbjct:   63 QIAYARIEGDMIVCAAYAHELPKYGIKVGLTNYAAAYCTGLLLARRLLNKFGLDKVYEGQVEVTGDEYNVESIDGEPGAFTCYLDAGLTRTTTGNKVFGALKGAVDGGLSIPHSTKRFPGYDSESKEFNPEVHRKHIFAQNVAEYMRLLMEEDEDAYKKQFSQYIKNGVTAD 234          
BLAST of CX289199 vs. ExPASy Swiss-Prot
Match: RL5_HELAN (60S ribosomal protein L5 OS=Helianthus annuus GN=RPL5A PE=2 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 4.385e-46
Identity = 90/174 (51.72%), Postives = 121/174 (69.54%), Query Frame = 2
Query:    2 QIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPA-DTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDADGL 520
            Q+  + I GD +L AAYAHELP+YG++VGLTNYAAAYCTGLLLAR++L  L +D  Y G+ E TGE+++V+P  D    FR  LDVGL++TTTG RVF            I HS KRF GF  + K+ +A+VHR++I+G HVA YM  L E++ E Y+  F++YIK G++AD +
Sbjct:   63 QVAYSRIEGDKILCAAYAHELPQYGVKVGLTNYAAAYCTGLLLARKLLSQLGLDKLYIGSTEVTGEEFNVKPVEDGPGAFRCYLDVGLMRTTTGARVFGAMKGAVDGGLNILHSTKRFPGFDSESKEFNADVHRQHIFGQHVAEYMRQLAEEDDEAYKRQFSQYIKLGLNADAI 236          
BLAST of CX289199 vs. ExPASy Swiss-Prot
Match: RL5_ANOGA (60S ribosomal protein L5 OS=Anopheles gambiae GN=RpL5 PE=2 SV=3)

HSP 1 Score: 183.726 bits (465), Expect = 4.385e-46
Identity = 93/174 (53.45%), Postives = 118/174 (67.82%), Query Frame = 2
Query:    2 QIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADT-RRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDADGL 520
            QI  A I GD ++ AAY+HELPRYG++VGLTNYAAAYCTGLL+ARR+L+ L +D  Y G  + TGE+Y VEP D     FR  LDVGL +TTTG RVF            IPHS KRF G+S + K  +AE+HR +I+G HVA YM TL E++ E ++  F++YI  GI AD +
Sbjct:   63 QIAYARIEGDRIVCAAYSHELPRYGVKVGLTNYAAAYCTGLLVARRILQKLRLDTLYAGCTDVTGEEYLVEPVDEGPAAFRCYLDVGLARTTTGARVFGAMKGAVDGGLNIPHSVKRFPGYSAENKSFNAEMHRDHIFGLHVANYMRTLEEEDEEAFKRQFSKYISLGIKADDI 236          
BLAST of CX289199 vs. ExPASy Swiss-Prot
Match: RL5_TOXCI (60S ribosomal protein L5 OS=Toxoptera citricida GN=RpL5 PE=2 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 7.480e-46
Identity = 94/174 (54.02%), Postives = 118/174 (67.82%), Query Frame = 2
Query:    2 QIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADT-RRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDADGL 520
            Q+  + I GD ++ AAY+HELP+YG++VGLTNYAAAYCTGLL+ARR+LK L +D  YEG  EA GE+Y VEPAD     FR  LDVGL+KT+TG RVF            IPHS KRF G+  + K+  AE HRK+I G HVA YM  L E++ + +   F++YIK GI AD L
Sbjct:   63 QVAHSRIEGDKIVCAAYSHELPKYGVKVGLTNYAAAYCTGLLVARRLLKKLGLDRLYEGLKEANGEEYYVEPADEGPNAFRCNLDVGLMKTSTGARVFGAMKGAVDGGFNIPHSVKRFPGYDAEAKEYSAETHRKHILGLHVAEYMRKLEEEDEDAFNRQFSQYIKLGIVADDL 236          
The following BLAST results are available for this feature:
BLAST of CX289199 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
RL5_CAEBR6.765e-4750.8760S ribosomal protein L5 OS=Caenorhabditis briggsa... [more]
RL5_CHICK8.836e-4752.8760S ribosomal protein L5 OS=Gallus gallus GN=RPL5 ... [more]
RL5_CAEEL1.154e-4650.2960S ribosomal protein L5 OS=Caenorhabditis elegans... [more]
RL5_DROME1.968e-4654.6060S ribosomal protein L5 OS=Drosophila melanogaste... [more]
RL5_AEDAE1.968e-4653.4560S ribosomal protein L5 OS=Aedes aegypti GN=RpL5 ... [more]
RL5B_XENLA2.571e-4651.7260S ribosomal protein L5-B OS=Xenopus laevis GN=rp... [more]
RL5A_XENLA2.571e-4652.3360S ribosomal protein L5-A OS=Xenopus laevis GN=rp... [more]
RL5_HELAN4.385e-4651.7260S ribosomal protein L5 OS=Helianthus annuus GN=R... [more]
RL5_ANOGA4.385e-4653.4560S ribosomal protein L5 OS=Anopheles gambiae GN=R... [more]
RL5_TOXCI7.480e-4654.0260S ribosomal protein L5 OS=Toxoptera citricida GN... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC02010C11SK IF1 Citrus clementina cDNA clone C02010C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289199 ID=CX289199; Name=CX289199; organism=Citrus clementina; type=EST; length=520bp
ACAGATAGTGTCAGCCAACATTGTTGGTGATTCTGTCCTTGCTGCTGCTT
ATGCCCATGAGCTTCCTCGTTATGGACTTGAAGTAGGTCTTACAAACTAT
GCTGCAGCTTATTGCACTGGGCTTCTTTTGGCTCGTCGTGTCTTGAAGAT
GCTTGAAATGGATGATGAGTATGAGGGCAATGTTGAGGCTACTGGAGAGG
ATTACTCTGTCGAACCAGCTGATACAAGGAGGCCATTCCGTGCTCTCCTT
GATGTTGGGCTCATCAAAACAACAACTGGAAACCGTGTCTTTGGTGCTCT
GAAGGGAGCATTAGATGGTGGATTGGACATTCCTCATAGTGACAAGAGGT
TTGCTGGTTTTTCAAAGGACGGCAAGCAGCTGGATGCTGAGGTTCACCGC
AAGTATATCTATGGTGGACATGTTGCTGCTTACATGAGTACATTGATGGA
AGATGAGCCAGAGAAGTATCAATCTCACTTCACTGAGTACATCAAGAAAG
GAATTGATGCTGATGGCTTG
back to top