CX289199

Overview
NameCX289199
Unique NameCX289199
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length520
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10259 contig Ccv1_Contig10259:245..764. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX289199 vs. ExPASy Swiss-Prot
Match: RL5_DICDI (60S ribosomal protein L5 OS=Dictyostelium discoideum GN=rpl5 PE=1 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 6.553e-42
Identity = 83/169 (49.11%), Postives = 119/169 (70.41%), Query Frame = 2
Query:    2 QIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTR-RPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGI 505
            Q+V + IVGD VL AAYAHELPR+G++VGLTNYA+ Y TGLLLARR+L  L++ D Y+G  +  G+ + V+P D + RPF+A LDVGL +T+TG +VF            +PH + RFAG++ + K+L+AE  R YI+G HVA+YM+ L  ++ + Y+  F++YIK G+
Sbjct:   63 QVVYSKIVGDFVLCAAYAHELPRFGVKVGLTNYASCYATGLLLARRLLAKLKLADLYKGAEKVDGKVFLVKPVDDKPRPFKANLDVGLARTSTGAKVFAVLKGAVDGGIYVPHGETRFAGYNAESKKLNAETLRGYIFGKHVASYMTLLQTEDEDAYKKIFSQYIKNGV 231          
BLAST of CX289199 vs. ExPASy Swiss-Prot
Match: RL5_YEAST (60S ribosomal protein L5 OS=Saccharomyces cerevisiae GN=RPL5 PE=1 SV=3)

HSP 1 Score: 167.548 bits (423), Expect = 3.252e-41
Identity = 85/174 (48.85%), Postives = 113/174 (64.94%), Query Frame = 2
Query:    2 QIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPA-DTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDADGL 520
            QI+S+ I GD VLAAAY+HELPRYG+  GLTN+AAAY TGLL+ARR L+ L +D+ Y+G  E  GE    E   D  RPF+  LD+GL +TTTG RVF            +PHS+ RF G+  + +++D E+ R YI+GGHV+ YM  L +D+ E++   F  Y+   IDAD L
Sbjct:   63 QIISSTITGDVVLAAAYSHELPRYGITHGLTNWAAAYATGLLIARRTLQRLGLDETYKGVEEVEGEYELTEAVEDGPRPFKVFLDIGLQRTTTGARVFGALKGASDGGLYVPHSENRFPGWDFETEEIDPELLRSYIFGGHVSQYMEELADDDEERFSELFKGYLADDIDADSL 236          
BLAST of CX289199 vs. ExPASy Swiss-Prot
Match: RL5_OIKDI (60S ribosomal protein L5 OS=Oikopleura dioica GN=RPL5 PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 6.133e-40
Identity = 83/174 (47.70%), Postives = 112/174 (64.37%), Query Frame = 2
Query:    2 QIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGED-YSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDADGL 520
            QI  A + GD ++ +AYAHELPRYG+ VGLTNY+AAY TGLL+ RRVL+   +D  YEG +E  G++ Y    A  +  FR  LD GL +T+TG R+F            IPHS KRF GF+ DGK L+AE H+ +I+GGHV  YM  L E+  E Y+  F+ +IK GI+++ +
Sbjct:   73 QIAYARLQGDVIVTSAYAHELPRYGVSVGLTNYSAAYATGLLIGRRVLQKFGLDSMYEGQIEVDGDEFYEEADAAEKASFRCYLDTGLARTSTGARIFGVLKGCADAGIDIPHSPKRFPGFA-DGK-LNAEAHKDHIFGGHVGDYMEKLEEENEEAYKRQFSRFIKNGINSENI 244          
BLAST of CX289199 vs. ExPASy Swiss-Prot
Match: RL5B_SCHPO (60S ribosomal protein L5-B OS=Schizosaccharomyces pombe GN=rpl5b PE=2 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 6.133e-40
Identity = 87/174 (50.00%), Postives = 112/174 (64.37%), Query Frame = 2
Query:    2 QIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPA-DTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDADGL 520
            QIVS+ + GD VLA A++ ELPRYG++ GL N+ AAY TGLL+ARR L  + + D+YEG  E  GE    E   D  RPF+  LDVGL +T+TG+RVF            IPHS  RF GF  + ++LD E  RKYIYGGHVA YM  L++D+ E+YQ  F+  I  GI++D L
Sbjct:   63 QIVSSRVNGDYVLAHAHSSELPRYGIKWGLANWTAAYATGLLVARRALAKVGLADKYEGVTEPEGEFELTEAIEDGPRPFKVFLDVGLKRTSTGSRVFGAMKGASDGGLFIPHSPNRFPGFDIETEELDDETLRKYIYGGHVAEYMEMLIDDDEERYQKQFSGLIADGIESDQL 236          
BLAST of CX289199 vs. ExPASy Swiss-Prot
Match: RL5A_SCHPO (60S ribosomal protein L5-A OS=Schizosaccharomyces pombe GN=rpl5a PE=1 SV=2)

HSP 1 Score: 163.31 bits (412), Expect = 6.133e-40
Identity = 87/174 (50.00%), Postives = 112/174 (64.37%), Query Frame = 2
Query:    2 QIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPA-DTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDADGL 520
            QIVS+ + GD VLA A++ ELPRYG++ GL N+ AAY TGLL+ARR L  + + D+YEG  E  GE    E   D  RPF+  LDVGL +T+TG+RVF            IPHS  RF GF  + ++LD E  RKYIYGGHVA YM  L++D+ E+YQ  F+  I  GI++D L
Sbjct:   63 QIVSSRVNGDYVLAHAHSSELPRYGIKWGLANWTAAYATGLLVARRALAKVGLADKYEGVTEPEGEFELTEAIEDGPRPFKVFLDVGLKRTSTGSRVFGAMKGASDGGLFIPHSPNRFPGFDIETEELDDETLRKYIYGGHVAEYMEMLIDDDEERYQKQFSGLIADGIESDQL 236          
BLAST of CX289199 vs. ExPASy Swiss-Prot
Match: RL5_SOLME (60S ribosomal protein L5 (Fragment) OS=Solanum melongena GN=RPL5 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 6.598e-18
Identity = 41/53 (77.36%), Postives = 45/53 (84.91%), Query Frame = 2
Query:  362 SKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDADGL 520
            SKD KQLDAEVHRKYIYGGHVAAYM+ LMEDEPEKYQSHF+ YIK  +  D +
Sbjct:    2 SKDSKQLDAEVHRKYIYGGHVAAYMNILMEDEPEKYQSHFSSYIKADLAPDNI 54          
BLAST of CX289199 vs. ExPASy Swiss-Prot
Match: RL5_PIG (60S ribosomal protein L5 (Fragment) OS=Sus scrofa GN=RPL5 PE=2 SV=3)

HSP 1 Score: 84.3445 bits (207), Expect = 3.621e-16
Identity = 41/62 (66.13%), Postives = 47/62 (75.81%), Query Frame = 2
Query:    2 QIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVE 187
            QI  A I GD ++ AAYAHELP+YG++VGLTNYAAAYCTGLLLARR+L    M   Y G VE
Sbjct:   63 QIAYARIEGDMIVCAAYAHELPKYGVKVGLTNYAAAYCTGLLLARRLLNRFGMXKIYGGQVE 124          
BLAST of CX289199 vs. ExPASy Swiss-Prot
Match: RL18_META3 (50S ribosomal protein L18P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 5.410e-12
Identity = 51/173 (29.48%), Postives = 75/173 (43.35%), Query Frame = 2
Query:    2 QIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDADGL 520
            QIV  + VGD ++ +A++ E+ + G +    N  AAY TGLLL ++ LK        EGN E                  A+LD+GL   T G  V             IPHS++   G  +             I G HV  Y   L  ++ EKY   F++Y+K G++ + L
Sbjct:   47 QIVEYDEVGDKIVVSAHSKEIVKLGYKGHCGNVPAAYLTGLLLGKKALK--------EGNEE------------------AILDLGLNSATKGAAVLAILKGAVDAGMDIPHSEEILPGEDR-------------INGSHVKEYAELLKVEDEEKYNKQFSKYLKNGLNPEDL 180          
The following BLAST results are available for this feature:
BLAST of CX289199 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
RL5_DICDI6.553e-4249.1160S ribosomal protein L5 OS=Dictyostelium discoide... [more]
RL5_YEAST3.252e-4148.8560S ribosomal protein L5 OS=Saccharomyces cerevisi... [more]
RL5_OIKDI6.133e-4047.7060S ribosomal protein L5 OS=Oikopleura dioica GN=R... [more]
RL5B_SCHPO6.133e-4050.0060S ribosomal protein L5-B OS=Schizosaccharomyces ... [more]
RL5A_SCHPO6.133e-4050.0060S ribosomal protein L5-A OS=Schizosaccharomyces ... [more]
RL5_SOLME6.598e-1877.3660S ribosomal protein L5 (Fragment) OS=Solanum mel... [more]
RL5_PIG3.621e-1666.1360S ribosomal protein L5 (Fragment) OS=Sus scrofa ... [more]
RL18_META35.410e-1229.4850S ribosomal protein L18P OS=Methanococcus aeolic... [more]

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Properties
Property NameValue
Genbank descriptionC02010C11SK IF1 Citrus clementina cDNA clone C02010C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289199 ID=CX289199; Name=CX289199; organism=Citrus clementina; type=EST; length=520bp
ACAGATAGTGTCAGCCAACATTGTTGGTGATTCTGTCCTTGCTGCTGCTT
ATGCCCATGAGCTTCCTCGTTATGGACTTGAAGTAGGTCTTACAAACTAT
GCTGCAGCTTATTGCACTGGGCTTCTTTTGGCTCGTCGTGTCTTGAAGAT
GCTTGAAATGGATGATGAGTATGAGGGCAATGTTGAGGCTACTGGAGAGG
ATTACTCTGTCGAACCAGCTGATACAAGGAGGCCATTCCGTGCTCTCCTT
GATGTTGGGCTCATCAAAACAACAACTGGAAACCGTGTCTTTGGTGCTCT
GAAGGGAGCATTAGATGGTGGATTGGACATTCCTCATAGTGACAAGAGGT
TTGCTGGTTTTTCAAAGGACGGCAAGCAGCTGGATGCTGAGGTTCACCGC
AAGTATATCTATGGTGGACATGTTGCTGCTTACATGAGTACATTGATGGA
AGATGAGCCAGAGAAGTATCAATCTCACTTCACTGAGTACATCAAGAAAG
GAATTGATGCTGATGGCTTG
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