CX289200

Overview
NameCX289200
Unique NameCX289200
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length515
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12170 contig Ccv1_Contig12170:1000..1514. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX289200 vs. ExPASy Swiss-Prot
Match: TBA_DICPU (Tubulin alpha chain (Fragment) OS=Dictyostelium purpureum GN=tuba PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 5.065e-15
Identity = 41/123 (33.33%), Postives = 67/123 (54.47%), Query Frame = 1
Query:    7 NMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSY--FVEWIPNNVKSSVCDIPP------RGLKMAST-----FIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEME 336
            N+M    P  G+Y+    M+RG +  KE  + + N++N+ S    FV+W P   K  + +  P       G  MA T      + N+T+I ++F R++ +F  M+ ++AF+HWY GEGM+E E
Sbjct:  209 NIMAKCQPHLGKYMACCLMYRGNIVPKEAQKAVQNIRNEKSKTVSFVDWSPTGFKCGINNSKPTTVLGENGDNMARTEKSVCMLSNTTAISQVFSRINHKFDLMYIKRAFVHWYVGEGMEEGE 331          
BLAST of CX289200 vs. ExPASy Swiss-Prot
Match: TBA8_CAEEL (Tubulin alpha-8 chain OS=Caenorhabditis elegans GN=tba-8 PE=2 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 5.065e-15
Identity = 40/126 (31.75%), Postives = 67/126 (53.17%), Query Frame = 1
Query:    7 NMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSV---CDIPPRGLKMAST-----FIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 360
            N M   DP  G+Y+    ++RG +  K+V+  + +V+ K    FV+W P   K  +     I   G  +A        + N+T+I E + R+  +F  M+ ++AF+HW+ GEGM+E EF EA  ++
Sbjct:  303 NQMVKCDPSAGKYMAVCLLYRGDVVPKDVNAAISSVKAKRGINFVDWCPTGFKVGINYQAPITVEGGDLAKVHRAVCMLSNTTAIAEAWARLDHKFDLMYSKRAFVHWFVGEGMEEGEFMEARDDL 428          
BLAST of CX289200 vs. ExPASy Swiss-Prot
Match: TBA1_ENTHI (Tubulin alpha-1 chain OS=Entamoeba histolytica GN=TUB1 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 6.615e-15
Identity = 42/128 (32.81%), Postives = 75/128 (58.59%), Query Frame = 1
Query:   10 MMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPR---GLKMAST-----FIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDL 369
            M+   D   G++++   M+RG +S++EV+  +  ++ +N+  FV W P + K  +   P     G   AST      I N T++ ++F++V++ F  MF ++AF+H Y GEGM+E EFT+A  ++ +L
Sbjct:  307 MIQCDDINKGKFMSCCMMYRGDVSSREVNLAVSGIKKQNTVPFVGWCPCSFKCGINSQPATAVPGSSYASTARSACMIANHTAMCQVFQKVNQNFDLMFGKRAFVHHYVGEGMEENEFTDARQDLYEL 434          
BLAST of CX289200 vs. ExPASy Swiss-Prot
Match: TBA_AJECA (Tubulin alpha chain (Fragment) OS=Ajellomyces capsulata GN=TUB1 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.514e-14
Identity = 37/118 (31.36%), Postives = 63/118 (53.39%), Query Frame = 1
Query:    7 NMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMA-------STFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEF 339
            N M   DPR+G+Y+    ++RG +  K+V      ++ K +  FV+  P   K  +C  PP  +          +  + N+T+I E +  +S +F  ++ ++AF+HWY GEGM+E EF
Sbjct:  301 NQMVKCDPRNGKYMATCLLYRGDVVPKDVHAVAATLKTKRTVQFVDLQPTGFKIGICYQPPTMVPNGDLAKVNRACMLSNTTAISEAWTALSHKFDLIYSKRAFVHWYVGEGMEEGEF 418          
BLAST of CX289200 vs. ExPASy Swiss-Prot
Match: TBE_MOUSE (Tubulin epsilon chain OS=Mus musculus GN=Tube1 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 5.600e-14
Identity = 39/123 (31.71%), Postives = 69/123 (56.10%), Query Frame = 1
Query:    7 NMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTG-EGMDEMEFTEAESNMNDLV 372
            + +  ADPRH  YL  + + RG +   ++   +  +  K +  FV W     K+S+C +PP G   +   + N+T ++  F  + E+FT ++++KA LH Y   +GM+E  FTEA S+++ L+
Sbjct:  331 HQLIQADPRHSLYLACALIVRGNVQISDLRRNIERL--KPALQFVSWNQEGWKTSLCSVPPVGHSHSLLALANNTCVKPTFMELRERFTRLYKKKAHLHHYLQVDGMEESTFTEAVSSLSALI 451          
BLAST of CX289200 vs. ExPASy Swiss-Prot
Match: TBE_HUMAN (Tubulin epsilon chain OS=Homo sapiens GN=TUBE1 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 7.314e-14
Identity = 40/123 (32.52%), Postives = 68/123 (55.28%), Query Frame = 1
Query:    7 NMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTG-EGMDEMEFTEAESNMNDLV 372
            + +  ADP+H  YL  + M RG +   ++   +  +  K S  FV W     K+S+C +PP G   +   + N+T ++  F  + E+F  ++++KA LH Y   EGM+E  FTEA S+++ L+
Sbjct:  331 HQLLRADPKHSLYLACALMVRGNVQISDLRRNIERL--KPSLQFVSWNQEGWKTSLCSVPPVGHSHSLLALANNTCVKPTFMELKERFMRLYKKKAHLHHYLQVEGMEESCFTEAVSSLSALI 451          
BLAST of CX289200 vs. ExPASy Swiss-Prot
Match: TBA_GLOLA (Tubulin alpha chain OS=Glomerella lagenarium GN=TUB1 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.379e-12
Identity = 37/131 (28.24%), Postives = 67/131 (51.15%), Query Frame = 1
Query:    7 NMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMAS------------TFIGNSTSIQEMFRRVS-EQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 360
            N M   DPR+G+Y+  + ++RG    ++ +  +  ++ K+S   VEW P   K  +    P  +  A             + + N+T++ E + +    +F  M  ++AF+HWY GEGM+E EF+EA  ++
Sbjct:  300 NQMVVCDPRNGKYMAVALLYRGDAVPRDCNAAIAALKAKSSFNLVEWCPTGFKLGINYQKPMAVPAAPGDGGLAPVDRSVSMLSNTTAMPEAWSKTGITKFDLMSAKRAFVHWYVGEGMEEGEFSEAREDL 430          
The following BLAST results are available for this feature:
BLAST of CX289200 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 377
Match NameE-valueIdentityDescription
TBA_DICPU5.065e-1533.33Tubulin alpha chain (Fragment) OS=Dictyostelium pu... [more]
TBA8_CAEEL5.065e-1531.75Tubulin alpha-8 chain OS=Caenorhabditis elegans GN... [more]
TBA1_ENTHI6.615e-1532.81Tubulin alpha-1 chain OS=Entamoeba histolytica GN=... [more]
TBA_AJECA2.514e-1431.36Tubulin alpha chain (Fragment) OS=Ajellomyces caps... [more]
TBE_MOUSE5.600e-1431.71Tubulin epsilon chain OS=Mus musculus GN=Tube1 PE=... [more]
TBE_HUMAN7.314e-1432.52Tubulin epsilon chain OS=Homo sapiens GN=TUBE1 PE=... [more]
TBA_GLOLA1.379e-1228.24Tubulin alpha chain OS=Glomerella lagenarium GN=TU... [more]

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Properties
Property NameValue
Genbank descriptionC02010C12SK IF1 Citrus clementina cDNA clone C02010C12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289200 ID=CX289200; Name=CX289200; organism=Citrus clementina; type=EST; length=515bp
GCCAAGAATATGATGTGTGCTGCTGACCCCCGCCATGGGCGCTACCTCAC
AGCCTCAGCCATGTTCAGAGGAAAGATGAGCACCAAAGAGGTGGATGAGC
AGATGATTAATGTACAGAACAAGAATTCATCCTACTTTGTGGAGTGGATC
CCCAACAATGTGAAGTCCAGCGTGTGCGATATTCCACCACGTGGTCTGAA
GATGGCATCTACTTTTATTGGTAACTCAACATCCATCCAAGAGATGTTCA
GGAGGGTGAGTGAACAGTTTACTGCCATGTTCCGGCGTAAGGCCTTTTTG
CATTGGTATACTGGGGAGGGTATGGATGAGATGGAGTTCACTGAGGCAGA
GAGCAACATGAATGACTTGGTGGCTGAGTACCAACAATATCAGGATGCAA
CAGCTGATGATGAGGAAGAGTATGAGGAGGGCCTTGAGGAGAGCTTCGAG
GGCTAAGAAAGGGTAGCAATCAAAGGGCAACCACAGAAAAAGAACGCTTG
ATGAGACCAACCCCC
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