CX289200
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX289200 vs. ExPASy Swiss-Prot
Match: TBA_DICPU (Tubulin alpha chain (Fragment) OS=Dictyostelium purpureum GN=tuba PE=3 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 5.065e-15 Identity = 41/123 (33.33%), Postives = 67/123 (54.47%), Query Frame = 1 Query: 7 NMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSY--FVEWIPNNVKSSVCDIPP------RGLKMAST-----FIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEME 336 N+M P G+Y+ M+RG + KE + + N++N+ S FV+W P K + + P G MA T + N+T+I ++F R++ +F M+ ++AF+HWY GEGM+E E Sbjct: 209 NIMAKCQPHLGKYMACCLMYRGNIVPKEAQKAVQNIRNEKSKTVSFVDWSPTGFKCGINNSKPTTVLGENGDNMARTEKSVCMLSNTTAISQVFSRINHKFDLMYIKRAFVHWYVGEGMEEGE 331
BLAST of CX289200 vs. ExPASy Swiss-Prot
Match: TBA8_CAEEL (Tubulin alpha-8 chain OS=Caenorhabditis elegans GN=tba-8 PE=2 SV=2) HSP 1 Score: 80.4925 bits (197), Expect = 5.065e-15 Identity = 40/126 (31.75%), Postives = 67/126 (53.17%), Query Frame = 1 Query: 7 NMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSV---CDIPPRGLKMAST-----FIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 360 N M DP G+Y+ ++RG + K+V+ + +V+ K FV+W P K + I G +A + N+T+I E + R+ +F M+ ++AF+HW+ GEGM+E EF EA ++ Sbjct: 303 NQMVKCDPSAGKYMAVCLLYRGDVVPKDVNAAISSVKAKRGINFVDWCPTGFKVGINYQAPITVEGGDLAKVHRAVCMLSNTTAIAEAWARLDHKFDLMYSKRAFVHWFVGEGMEEGEFMEARDDL 428
BLAST of CX289200 vs. ExPASy Swiss-Prot
Match: TBA1_ENTHI (Tubulin alpha-1 chain OS=Entamoeba histolytica GN=TUB1 PE=3 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 6.615e-15 Identity = 42/128 (32.81%), Postives = 75/128 (58.59%), Query Frame = 1 Query: 10 MMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPR---GLKMAST-----FIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDL 369 M+ D G++++ M+RG +S++EV+ + ++ +N+ FV W P + K + P G AST I N T++ ++F++V++ F MF ++AF+H Y GEGM+E EFT+A ++ +L Sbjct: 307 MIQCDDINKGKFMSCCMMYRGDVSSREVNLAVSGIKKQNTVPFVGWCPCSFKCGINSQPATAVPGSSYASTARSACMIANHTAMCQVFQKVNQNFDLMFGKRAFVHHYVGEGMEENEFTDARQDLYEL 434
BLAST of CX289200 vs. ExPASy Swiss-Prot
Match: TBA_AJECA (Tubulin alpha chain (Fragment) OS=Ajellomyces capsulata GN=TUB1 PE=3 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 2.514e-14 Identity = 37/118 (31.36%), Postives = 63/118 (53.39%), Query Frame = 1 Query: 7 NMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMA-------STFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEF 339 N M DPR+G+Y+ ++RG + K+V ++ K + FV+ P K +C PP + + + N+T+I E + +S +F ++ ++AF+HWY GEGM+E EF Sbjct: 301 NQMVKCDPRNGKYMATCLLYRGDVVPKDVHAVAATLKTKRTVQFVDLQPTGFKIGICYQPPTMVPNGDLAKVNRACMLSNTTAISEAWTALSHKFDLIYSKRAFVHWYVGEGMEEGEF 418
BLAST of CX289200 vs. ExPASy Swiss-Prot
Match: TBE_MOUSE (Tubulin epsilon chain OS=Mus musculus GN=Tube1 PE=2 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 5.600e-14 Identity = 39/123 (31.71%), Postives = 69/123 (56.10%), Query Frame = 1 Query: 7 NMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTG-EGMDEMEFTEAESNMNDLV 372 + + ADPRH YL + + RG + ++ + + K + FV W K+S+C +PP G + + N+T ++ F + E+FT ++++KA LH Y +GM+E FTEA S+++ L+ Sbjct: 331 HQLIQADPRHSLYLACALIVRGNVQISDLRRNIERL--KPALQFVSWNQEGWKTSLCSVPPVGHSHSLLALANNTCVKPTFMELRERFTRLYKKKAHLHHYLQVDGMEESTFTEAVSSLSALI 451
BLAST of CX289200 vs. ExPASy Swiss-Prot
Match: TBE_HUMAN (Tubulin epsilon chain OS=Homo sapiens GN=TUBE1 PE=2 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 7.314e-14 Identity = 40/123 (32.52%), Postives = 68/123 (55.28%), Query Frame = 1 Query: 7 NMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTG-EGMDEMEFTEAESNMNDLV 372 + + ADP+H YL + M RG + ++ + + K S FV W K+S+C +PP G + + N+T ++ F + E+F ++++KA LH Y EGM+E FTEA S+++ L+ Sbjct: 331 HQLLRADPKHSLYLACALMVRGNVQISDLRRNIERL--KPSLQFVSWNQEGWKTSLCSVPPVGHSHSLLALANNTCVKPTFMELKERFMRLYKKKAHLHHYLQVEGMEESCFTEAVSSLSALI 451
BLAST of CX289200 vs. ExPASy Swiss-Prot
Match: TBA_GLOLA (Tubulin alpha chain OS=Glomerella lagenarium GN=TUB1 PE=3 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 1.379e-12 Identity = 37/131 (28.24%), Postives = 67/131 (51.15%), Query Frame = 1 Query: 7 NMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMAS------------TFIGNSTSIQEMFRRVS-EQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 360 N M DPR+G+Y+ + ++RG ++ + + ++ K+S VEW P K + P + A + + N+T++ E + + +F M ++AF+HWY GEGM+E EF+EA ++ Sbjct: 300 NQMVVCDPRNGKYMAVALLYRGDAVPRDCNAAIAALKAKSSFNLVEWCPTGFKLGINYQKPMAVPAAPGDGGLAPVDRSVSMLSNTTAMPEAWSKTGITKFDLMSAKRAFVHWYVGEGMEEGEFSEAREDL 430 The following BLAST results are available for this feature:
BLAST of CX289200 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 377
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Sequences
The
following sequences are available for this feature:
EST sequence >CX289200 ID=CX289200; Name=CX289200; organism=Citrus clementina; type=EST; length=515bpback to top |