CX289200

Overview
NameCX289200
Unique NameCX289200
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length515
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12170 contig Ccv1_Contig12170:1000..1514. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX289200 vs. ExPASy Swiss-Prot
Match: TBB3_WHEAT (Tubulin beta-3 chain OS=Triticum aestivum GN=TUBB3 PE=2 SV=1)

HSP 1 Score: 248.054 bits (632), Expect = 1.834e-65
Identity = 118/124 (95.16%), Postives = 122/124 (98.39%), Query Frame = 1 
Query:    1 AKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 372
            +KNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQM+NVQNKNSSYFVEWIPNNVKSSVCDIPP GL M+STF+GNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  296 SKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSSVCDIPPTGLSMSSTFVGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 419
[Close]
BLAST of CX289200 vs. ExPASy Swiss-Prot
Match: TBB2_SOYBN (Tubulin beta-2 chain OS=Glycine max GN=TUBB2 PE=3 SV=1)

HSP 1 Score: 248.054 bits (632), Expect = 1.834e-65
Identity = 119/124 (95.97%), Postives = 123/124 (99.19%), Query Frame = 1 
Query:    1 AKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 372
            +KNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIP+NVKS+VCDIPP GL+MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  296 SKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPHNVKSTVCDIPPTGLRMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 419
[Close]
BLAST of CX289200 vs. ExPASy Swiss-Prot
Match: TBB9_ARATH (Tubulin beta-9 chain OS=Arabidopsis thaliana GN=TUBB9 PE=2 SV=1)

HSP 1 Score: 247.669 bits (631), Expect = 2.395e-65
Identity = 120/124 (96.77%), Postives = 122/124 (98.39%), Query Frame = 1 
Query:    1 AKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 372
            AKNMMCAADPRHGRYLTASA+FRGKMSTKEVDEQM+NVQNKNSSYFVEWIPNNVKSSVCDI P GLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  296 AKNMMCAADPRHGRYLTASAVFRGKMSTKEVDEQMMNVQNKNSSYFVEWIPNNVKSSVCDIAPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 419
[Close]
BLAST of CX289200 vs. ExPASy Swiss-Prot
Match: TBB4_ARATH (Tubulin beta-4 chain OS=Arabidopsis thaliana GN=TUBB4 PE=2 SV=2)

HSP 1 Score: 247.284 bits (630), Expect = 3.129e-65
Identity = 118/124 (95.16%), Postives = 123/124 (99.19%), Query Frame = 1 
Query:    1 AKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 372
            AKNMMCAADPRHGRYLTASA+FRGK+STKEVDEQM+N+QNKNSSYFVEWIPNNVKSSVCDI P+GLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  296 AKNMMCAADPRHGRYLTASAVFRGKLSTKEVDEQMMNIQNKNSSYFVEWIPNNVKSSVCDIAPKGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 419
[Close]
BLAST of CX289200 vs. ExPASy Swiss-Prot
Match: TBB_POLAG (Tubulin beta chain OS=Polytomella agilis GN=TUBB1 PE=3 SV=1)

HSP 1 Score: 246.899 bits (629), Expect = 4.086e-65
Identity = 116/124 (93.55%), Postives = 124/124 (100.00%), Query Frame = 1 
Query:    1 AKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 372
            AKNMMCAADPRHGRYLTASA+FRG+MSTKEVDEQM+NVQNKNSSYFVEWIPNNVKSSVCDIPP+GLKM++TFIGNST+IQEMF+RVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  296 AKNMMCAADPRHGRYLTASALFRGRMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSSVCDIPPKGLKMSATFIGNSTAIQEMFKRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 419
[Close]
BLAST of CX289200 vs. ExPASy Swiss-Prot
Match: TBB_CHLRE (Tubulin beta-1/beta-2 chain OS=Chlamydomonas reinhardtii GN=TUBB1 PE=3 SV=1)

HSP 1 Score: 246.899 bits (629), Expect = 4.086e-65
Identity = 116/124 (93.55%), Postives = 124/124 (100.00%), Query Frame = 1 
Query:    1 AKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 372
            AKNMMCAADPRHGRYLTASA+FRG+MSTKEVDEQM+NVQNKNSSYFVEWIPNNVKSSVCDIPP+GLKM++TFIGNST+IQEMF+RVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  296 AKNMMCAADPRHGRYLTASALFRGRMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSSVCDIPPKGLKMSATFIGNSTAIQEMFKRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 419
[Close]
BLAST of CX289200 vs. ExPASy Swiss-Prot
Match: TBB_CHLIN (Tubulin beta chain OS=Chlamydomonas incerta GN=TUBB PE=3 SV=1)

HSP 1 Score: 246.899 bits (629), Expect = 4.086e-65
Identity = 116/124 (93.55%), Postives = 124/124 (100.00%), Query Frame = 1 
Query:    1 AKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 372
            AKNMMCAADPRHGRYLTASA+FRG+MSTKEVDEQM+NVQNKNSSYFVEWIPNNVKSSVCDIPP+GLKM++TFIGNST+IQEMF+RVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  296 AKNMMCAADPRHGRYLTASALFRGRMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSSVCDIPPKGLKMSATFIGNSTAIQEMFKRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 419
[Close]
BLAST of CX289200 vs. ExPASy Swiss-Prot
Match: TBB8_ORYSJ (Tubulin beta-8 chain OS=Oryza sativa subsp. japonica GN=TUBB8 PE=2 SV=1)

HSP 1 Score: 246.899 bits (629), Expect = 4.086e-65
Identity = 119/124 (95.97%), Postives = 121/124 (97.58%), Query Frame = 1 
Query:    1 AKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 372
            AKNMMCAADPRHGRYLTASAMFRG+MSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP GL MASTF+GNSTSIQEMFRRVSEQFTAMFRRKAFLHWYT EGMDEMEFTEAESNMNDLV
Sbjct:  296 AKNMMCAADPRHGRYLTASAMFRGRMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPVGLSMASTFVGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTSEGMDEMEFTEAESNMNDLV 419
[Close]
BLAST of CX289200 vs. ExPASy Swiss-Prot
Match: TBB3_MAIZE (Tubulin beta-3 chain OS=Zea mays GN=TUBB3 PE=2 SV=1)

HSP 1 Score: 246.899 bits (629), Expect = 4.086e-65
Identity = 119/124 (95.97%), Postives = 121/124 (97.58%), Query Frame = 1 
Query:    1 AKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 372
            AKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP GL M+STF+GNSTSIQEMFRRVSEQFTAMFRRKAFLHWYT EGMDEMEFTEAESNMNDLV
Sbjct:  296 AKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPVGLSMSSTFVGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTSEGMDEMEFTEAESNMNDLV 419
[Close]
BLAST of CX289200 vs. ExPASy Swiss-Prot
Match: TBB1_VOLCA (Tubulin beta chain OS=Volvox carteri GN=TUBB1 PE=3 SV=1)

HSP 1 Score: 246.899 bits (629), Expect = 4.086e-65
Identity = 116/124 (93.55%), Postives = 124/124 (100.00%), Query Frame = 1 
Query:    1 AKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 372
            AKNMMCAADPRHGRYLTASA+FRG+MSTKEVDEQM+NVQNKNSSYFVEWIPNNVKSSVCDIPP+GLKM++TFIGNST+IQEMF+RVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  296 AKNMMCAADPRHGRYLTASALFRGRMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSSVCDIPPKGLKMSATFIGNSTAIQEMFKRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 419
The following BLAST results are available for this feature:
BLAST of CX289200 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 377
Match NameE-valueIdentityDescription
TBB3_WHEAT1.834e-6595.16Tubulin beta-3 chain OS=Triticum aestivum GN=TUBB3... [more]
TBB2_SOYBN1.834e-6595.97Tubulin beta-2 chain OS=Glycine max GN=TUBB2 PE=3 ... [more]
TBB9_ARATH2.395e-6596.77Tubulin beta-9 chain OS=Arabidopsis thaliana GN=TU... [more]
TBB4_ARATH3.129e-6595.16Tubulin beta-4 chain OS=Arabidopsis thaliana GN=TU... [more]
TBB_POLAG4.086e-6593.55Tubulin beta chain OS=Polytomella agilis GN=TUBB1 ... [more]
TBB_CHLRE4.086e-6593.55Tubulin beta-1/beta-2 chain OS=Chlamydomonas reinh... [more]
TBB_CHLIN4.086e-6593.55Tubulin beta chain OS=Chlamydomonas incerta GN=TUB... [more]
TBB8_ORYSJ4.086e-6595.97Tubulin beta-8 chain OS=Oryza sativa subsp. japoni... [more]
TBB3_MAIZE4.086e-6595.97Tubulin beta-3 chain OS=Zea mays GN=TUBB3 PE=2 SV=... [more]
TBB1_VOLCA4.086e-6593.55Tubulin beta chain OS=Volvox carteri GN=TUBB1 PE=3... [more]

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Properties
Property NameValue
Genbank descriptionC02010C12SK IF1 Citrus clementina cDNA clone C02010C12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289200 ID=CX289200; Name=CX289200; organism=Citrus clementina; type=EST; length=515bp
GCCAAGAATATGATGTGTGCTGCTGACCCCCGCCATGGGCGCTACCTCAC
AGCCTCAGCCATGTTCAGAGGAAAGATGAGCACCAAAGAGGTGGATGAGC
AGATGATTAATGTACAGAACAAGAATTCATCCTACTTTGTGGAGTGGATC
CCCAACAATGTGAAGTCCAGCGTGTGCGATATTCCACCACGTGGTCTGAA
GATGGCATCTACTTTTATTGGTAACTCAACATCCATCCAAGAGATGTTCA
GGAGGGTGAGTGAACAGTTTACTGCCATGTTCCGGCGTAAGGCCTTTTTG
CATTGGTATACTGGGGAGGGTATGGATGAGATGGAGTTCACTGAGGCAGA
GAGCAACATGAATGACTTGGTGGCTGAGTACCAACAATATCAGGATGCAA
CAGCTGATGATGAGGAAGAGTATGAGGAGGGCCTTGAGGAGAGCTTCGAG
GGCTAAGAAAGGGTAGCAATCAAAGGGCAACCACAGAAAAAGAACGCTTG
ATGAGACCAACCCCC
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