CX289203

Overview
NameCX289203
Unique NameCX289203
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length413
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289203 vs. ExPASy Swiss-Prot
Match: RS3A_ANODA (40S ribosomal protein S3a OS=Anopheles darlingi PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 1.041e-28
Identity = 61/92 (66.30%), Postives = 75/92 (81.52%), Query Frame = 1
Query:  139 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEE--EHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKW 408
            DWYD+KAP+ F+ R VGKTLV RTQGT+IAS+GLK RVFEVSL DL NE+  E ++RK +L AE V G++VL NF GM+ TTDKLRS+V+KW
Sbjct:   29 DWYDVKAPNMFKNRQVGKTLVNRTQGTRIASDGLKGRVFEVSLADLQNEQDAERSFRKFKLIAESVNGRDVLCNFHGMDLTTDKLRSMVKKW 120          
BLAST of CX289203 vs. ExPASy Swiss-Prot
Match: RS3A2_YEAST (40S ribosomal protein S1-B OS=Saccharomyces cerevisiae GN=RPS1B PE=1 SV=3)

HSP 1 Score: 125.176 bits (313), Expect = 1.041e-28
Identity = 58/90 (64.44%), Postives = 73/90 (81.11%), Query Frame = 1
Query:  139 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKW 408
            +W+DIKAPS F  RNVGKTLV ++ G K AS+ LK RV EV L DL   E+H++RK++LR ++VQGKN+LTNF GM+FTTDKLRS+VRKW
Sbjct:   28 EWFDIKAPSTFENRNVGKTLVNKSTGLKNASDALKGRVVEVCLADLQGSEDHSFRKVKLRVDEVQGKNLLTNFHGMDFTTDKLRSMVRKW 117          
BLAST of CX289203 vs. ExPASy Swiss-Prot
Match: RS3A2_YEAS7 (40S ribosomal protein S1-B OS=Saccharomyces cerevisiae (strain YJM789) GN=RPS1B PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 1.041e-28
Identity = 58/90 (64.44%), Postives = 73/90 (81.11%), Query Frame = 1
Query:  139 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKW 408
            +W+DIKAPS F  RNVGKTLV ++ G K AS+ LK RV EV L DL   E+H++RK++LR ++VQGKN+LTNF GM+FTTDKLRS+VRKW
Sbjct:   28 EWFDIKAPSTFENRNVGKTLVNKSTGLKNASDALKGRVVEVCLADLQGSEDHSFRKVKLRVDEVQGKNLLTNFHGMDFTTDKLRSMVRKW 117          
BLAST of CX289203 vs. ExPASy Swiss-Prot
Match: RS3A2_YEAS6 (40S ribosomal protein S1-B OS=Saccharomyces cerevisiae (strain AWRI1631) GN=RPS1B PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 1.041e-28
Identity = 58/90 (64.44%), Postives = 73/90 (81.11%), Query Frame = 1
Query:  139 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKW 408
            +W+DIKAPS F  RNVGKTLV ++ G K AS+ LK RV EV L DL   E+H++RK++LR ++VQGKN+LTNF GM+FTTDKLRS+VRKW
Sbjct:   28 EWFDIKAPSTFENRNVGKTLVNKSTGLKNASDALKGRVVEVCLADLQGSEDHSFRKVKLRVDEVQGKNLLTNFHGMDFTTDKLRSMVRKW 117          
BLAST of CX289203 vs. ExPASy Swiss-Prot
Match: RS3A2_YEAS2 (40S ribosomal protein S1-B OS=Saccharomyces cerevisiae (strain JAY291) GN=RPS1B PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 1.041e-28
Identity = 58/90 (64.44%), Postives = 73/90 (81.11%), Query Frame = 1
Query:  139 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKW 408
            +W+DIKAPS F  RNVGKTLV ++ G K AS+ LK RV EV L DL   E+H++RK++LR ++VQGKN+LTNF GM+FTTDKLRS+VRKW
Sbjct:   28 EWFDIKAPSTFENRNVGKTLVNKSTGLKNASDALKGRVVEVCLADLQGSEDHSFRKVKLRVDEVQGKNLLTNFHGMDFTTDKLRSMVRKW 117          
BLAST of CX289203 vs. ExPASy Swiss-Prot
Match: RS3A2_YEAS1 (40S ribosomal protein S1-B OS=Saccharomyces cerevisiae (strain RM11-1a) GN=RPS1B PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 1.041e-28
Identity = 58/90 (64.44%), Postives = 73/90 (81.11%), Query Frame = 1
Query:  139 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKW 408
            +W+DIKAPS F  RNVGKTLV ++ G K AS+ LK RV EV L DL   E+H++RK++LR ++VQGKN+LTNF GM+FTTDKLRS+VRKW
Sbjct:   28 EWFDIKAPSTFENRNVGKTLVNKSTGLKNASDALKGRVVEVCLADLQGSEDHSFRKVKLRVDEVQGKNLLTNFHGMDFTTDKLRSMVRKW 117          
BLAST of CX289203 vs. ExPASy Swiss-Prot
Match: RS3A_EMENI (40S ribosomal protein S1 OS=Emericella nidulans GN=rps1 PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 1.776e-28
Identity = 58/90 (64.44%), Postives = 73/90 (81.11%), Query Frame = 1
Query:  139 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKW 408
            D Y +KAPS F  R+VGKTLV RT G K A++ LK R+FEVSL DL  +E+HA+RK++LR +++QGKN LTNF G++FTTDKLRSLVRKW
Sbjct:   28 DEYSVKAPSTFANRDVGKTLVNRTSGLKNANDSLKGRIFEVSLADLQGDEDHAFRKVKLRVDEIQGKNCLTNFHGLDFTTDKLRSLVRKW 117          
BLAST of CX289203 vs. ExPASy Swiss-Prot
Match: RS3A_MALGO (40S ribosomal protein S1 OS=Malassezia globosa (strain ATCC 96807 / CBS 7966) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 3.030e-28
Identity = 58/90 (64.44%), Postives = 72/90 (80.00%), Query Frame = 1
Query:  139 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKW 408
            +WYDIKAP  F  RNVGKT+V R+QG K AS+ LK R+ E SL DL  ++E AYRK +LR ++VQG+N LTNF+GM+FT+DKLRSLVRKW
Sbjct:   27 EWYDIKAPVFFENRNVGKTIVNRSQGLKNASDALKGRILEQSLADLNKDDEQAYRKFQLRVDEVQGRNCLTNFYGMSFTSDKLRSLVRKW 116          
BLAST of CX289203 vs. ExPASy Swiss-Prot
Match: RS3A_LYSTE (40S ribosomal protein S3a OS=Lysiphlebus testaceipes PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 3.030e-28
Identity = 63/92 (68.48%), Postives = 72/92 (78.26%), Query Frame = 1
Query:  139 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLN--EEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKW 408
            DWYDIKAPS F  R VGKTLV RTQGTKIASEGLK RV EVSL DL +  + E ++RK RL  EDVQ ++VL NF GM+ TTDKLRS+V+KW
Sbjct:   29 DWYDIKAPSMFTTRQVGKTLVNRTQGTKIASEGLKGRVVEVSLADLQSDADAERSFRKFRLIVEDVQNRSVLCNFHGMDLTTDKLRSMVKKW 120          
BLAST of CX289203 vs. ExPASy Swiss-Prot
Match: RS3A_COCP7 (40S ribosomal protein S1 OS=Coccidioides posadasii (strain C735) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 3.030e-28
Identity = 59/90 (65.56%), Postives = 74/90 (82.22%), Query Frame = 1
Query:  139 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKW 408
            D Y +KAPS F VR+VGKT+V RT G K A++ LK R+FEVSL DL N++ H++RKI+LR ++VQGKN LTNF GM+FT+DKLRSLVRKW
Sbjct:   28 DEYLVKAPSTFAVRDVGKTIVNRTTGLKNANDSLKGRIFEVSLADLQNDQAHSFRKIKLRVDEVQGKNCLTNFHGMDFTSDKLRSLVRKW 117          
The following BLAST results are available for this feature:
BLAST of CX289203 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 157
Match NameE-valueIdentityDescription
RS3A_ANODA1.041e-2866.3040S ribosomal protein S3a OS=Anopheles darlingi PE... [more]
RS3A2_YEAST1.041e-2864.4440S ribosomal protein S1-B OS=Saccharomyces cerevi... [more]
RS3A2_YEAS71.041e-2864.4440S ribosomal protein S1-B OS=Saccharomyces cerevi... [more]
RS3A2_YEAS61.041e-2864.4440S ribosomal protein S1-B OS=Saccharomyces cerevi... [more]
RS3A2_YEAS21.041e-2864.4440S ribosomal protein S1-B OS=Saccharomyces cerevi... [more]
RS3A2_YEAS11.041e-2864.4440S ribosomal protein S1-B OS=Saccharomyces cerevi... [more]
RS3A_EMENI1.776e-2864.4440S ribosomal protein S1 OS=Emericella nidulans GN... [more]
RS3A_MALGO3.030e-2864.4440S ribosomal protein S1 OS=Malassezia globosa (st... [more]
RS3A_LYSTE3.030e-2868.4840S ribosomal protein S3a OS=Lysiphlebus testaceip... [more]
RS3A_COCP73.030e-2865.5640S ribosomal protein S1 OS=Coccidioides posadasii... [more]

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Properties
Property NameValue
Genbank descriptionC02010D04SK IF1 Citrus clementina cDNA clone C02010D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289203 ID=CX289203; Name=CX289203; organism=Citrus clementina; type=EST; length=413bp
GAACGAGCTAGGACTAGGTAGCAGCGGAGCCGTCTCTTGAGCAGCAGCTG
CACAAACATGGCTGTCGGGAAGAACAAGAGGATTTCAAAGGGGAAGAAAG
GAGGCAAGAAGAAGGCTGCTGATCCGTTTGCCAAGAAGGACTGGTATGAT
ATCAAGGCTCCATCTTGTTTCCGCGTCAGAAATGTTGGCAAGACTCTTGT
TACCCGGACTCAGGGTACCAAGATTGCATCAGAAGGTCTCAAGCACAGAG
TGTTTGAGGTATCACTAGGTGATCTTCTCAATGAAGAAGAGCATGCTTAC
AGGAAGATCAGACTGAGAGCTGAAGATGTCCAAGGGAAGAATGTTTTGAC
TAACTTCTGGGGCATGAATTTCACTACAGACAAGCTGAGGTCTTTGGTTA
GGAAGTGGCATAC
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