CX289203

Overview
NameCX289203
Unique NameCX289203
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length413
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289203 vs. ExPASy Swiss-Prot
Match: RS3A_COCIM (40S ribosomal protein S1 OS=Coccidioides immitis GN=RPS1 PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 3.030e-28
Identity = 59/90 (65.56%), Postives = 74/90 (82.22%), Query Frame = 1
Query:  139 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKW 408
            D Y +KAPS F VR+VGKT+V RT G K A++ LK R+FEVSL DL N++ H++RKI+LR ++VQGKN LTNF GM+FT+DKLRSLVRKW
Sbjct:   28 DEYLVKAPSTFAVRDVGKTIVNRTTGLKNANDSLKGRIFEVSLADLQNDQAHSFRKIKLRVDEVQGKNCLTNFHGMDFTSDKLRSLVRKW 117          
BLAST of CX289203 vs. ExPASy Swiss-Prot
Match: RS3A_APLCA (40S ribosomal protein S3a OS=Aplysia californica GN=RPS3A PE=3 SV=2)

HSP 1 Score: 123.635 bits (309), Expect = 3.030e-28
Identity = 61/90 (67.78%), Postives = 74/90 (82.22%), Query Frame = 1
Query:  139 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKW 408
            +WYD+KAPS F VR +GKTLVTR+QGTKIAS+ LK RVFEVSL DL N+E   +RK +L AE+VQG+NVLTNF GM+ T DKL S+V+KW
Sbjct:   29 EWYDVKAPSMFAVRQIGKTLVTRSQGTKIASDNLKGRVFEVSLADLQNDEV-TFRKFKLIAEEVQGRNVLTNFSGMSLTRDKLCSMVKKW 117          
BLAST of CX289203 vs. ExPASy Swiss-Prot
Match: RS3A_YARLI (40S ribosomal protein S1 OS=Yarrowia lipolytica GN=RPS1 PE=3 SV=2)

HSP 1 Score: 123.25 bits (308), Expect = 3.957e-28
Identity = 56/90 (62.22%), Postives = 75/90 (83.33%), Query Frame = 1
Query:  139 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKW 408
            DWY+IKAPS F  R+VGKTLV R+ G ++A++ LK RV EVSL DL  +E+H+++K++LR ++VQGKN+LTNF G +FT+DKLRSLVRKW
Sbjct:   28 DWYNIKAPSTFENRDVGKTLVNRSTGLRLANDYLKGRVLEVSLADLQGQEDHSFKKVKLRVDEVQGKNLLTNFHGFDFTSDKLRSLVRKW 117          
BLAST of CX289203 vs. ExPASy Swiss-Prot
Match: RS3A_VANPO (40S ribosomal protein S1 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 3.957e-28
Identity = 57/90 (63.33%), Postives = 73/90 (81.11%), Query Frame = 1
Query:  139 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKW 408
            +W+DIKAPS F  RNVGKTLV ++ G K A++ LK RV EV L DL   E+H++RKI+LR ++VQGKN+LTNF GM+FTTDK+RS+VRKW
Sbjct:   28 EWFDIKAPSTFENRNVGKTLVNKSTGLKNAADALKGRVVEVCLADLQGSEDHSFRKIKLRVDEVQGKNLLTNFHGMDFTTDKVRSMVRKW 117          
BLAST of CX289203 vs. ExPASy Swiss-Prot
Match: RS3A_PICGU (40S ribosomal protein S1 OS=Pichia guilliermondii GN=RPS1 PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 3.957e-28
Identity = 56/90 (62.22%), Postives = 74/90 (82.22%), Query Frame = 1
Query:  139 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKW 408
            +W+DIKAP+ F  R VGKTL+ ++ G K A++GLK RV EV+L DL   E+HAYRK++LR ++VQGKN+LTNF G++FT+DKLRSLVRKW
Sbjct:   28 EWFDIKAPTTFENRAVGKTLINKSTGLKNAADGLKGRVIEVNLADLQGSEDHAYRKVKLRVDEVQGKNLLTNFHGIDFTSDKLRSLVRKW 117          
BLAST of CX289203 vs. ExPASy Swiss-Prot
Match: RS3A_ASHGO (40S ribosomal protein S1 OS=Ashbya gossypii GN=RPS1 PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 3.957e-28
Identity = 57/90 (63.33%), Postives = 73/90 (81.11%), Query Frame = 1
Query:  139 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKW 408
            +WYDIKAPS F  RNVGKTLV ++ G K A++ LK RV EV L DL   E+H++RK++LR ++VQGKN+LTNF G++FTTDKLRS+VRKW
Sbjct:   28 EWYDIKAPSTFENRNVGKTLVNKSTGLKNAADFLKGRVVEVCLADLQGSEDHSFRKVKLRVDEVQGKNLLTNFHGLDFTTDKLRSMVRKW 117          
BLAST of CX289203 vs. ExPASy Swiss-Prot
Match: RS3A_ZYGRC (40S ribosomal protein S1 OS=Zygosaccharomyces rouxii (strain ATCC 2623 / CBS 732 / IFO 1130 / NBRC 1623 / NCYC 568) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 5.168e-28
Identity = 58/90 (64.44%), Postives = 71/90 (78.89%), Query Frame = 1
Query:  139 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKW 408
            +WYDIKAPS F+ RNVGKTLV R+ G K AS+ LK RV E  L DL   E+H++RKI+LR ++VQGKN+LTN  GM+FTTDK RS+VRKW
Sbjct:   28 EWYDIKAPSTFKNRNVGKTLVNRSAGLKSASDTLKGRVVEACLADLQGSEDHSFRKIKLRVDEVQGKNLLTNIHGMDFTTDKYRSMVRKW 117          
BLAST of CX289203 vs. ExPASy Swiss-Prot
Match: RS3A_PICPG (40S ribosomal protein S1 OS=Pichia pastoris (strain GS115) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 6.750e-28
Identity = 56/90 (62.22%), Postives = 73/90 (81.11%), Query Frame = 1
Query:  139 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKW 408
            +WYDIKAP+ F  RNVGKTL+ ++ G K A +GLK RV EVSL DL   E+H+++KI+LR ++VQGKN+LTNF G +FT+DK+RSLVRKW
Sbjct:   28 EWYDIKAPTTFENRNVGKTLINKSTGLKNAVDGLKGRVVEVSLADLQGSEDHSFKKIKLRVDEVQGKNLLTNFHGFDFTSDKVRSLVRKW 117          
BLAST of CX289203 vs. ExPASy Swiss-Prot
Match: RS3A_BOMMO (40S ribosomal protein S3a OS=Bombyx mori PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 8.816e-28
Identity = 63/92 (68.48%), Postives = 71/92 (77.17%), Query Frame = 1
Query:  139 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLL--NEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKW 408
            DWYD+KAPS F  R VG TLV RTQGTKIASEGLK RVFEVSL DL    + E ++RK RL AE VQG+NVL NF GM+ TTDKLR +V+KW
Sbjct:   29 DWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKW 120          
BLAST of CX289203 vs. ExPASy Swiss-Prot
Match: RS3A_UNCRE (40S ribosomal protein S1 OS=Uncinocarpus reesii (strain UAMH 1704) GN=RPS1 PE=3 SV=2)

HSP 1 Score: 121.709 bits (304), Expect = 1.151e-27
Identity = 58/90 (64.44%), Postives = 73/90 (81.11%), Query Frame = 1
Query:  139 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKW 408
            D Y +KAPS F  R+VGKT+V RT G K A++ LK R+FEVSL DL N++ H++RKI+LR ++VQGKN LTNF GM+FT+DKLRSLVRKW
Sbjct:   28 DEYLVKAPSTFATRDVGKTIVNRTVGLKNANDSLKGRIFEVSLADLQNDQAHSFRKIKLRVDEVQGKNCLTNFHGMDFTSDKLRSLVRKW 117          
The following BLAST results are available for this feature:
BLAST of CX289203 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 157
Match NameE-valueIdentityDescription
RS3A_COCIM3.030e-2865.5640S ribosomal protein S1 OS=Coccidioides immitis G... [more]
RS3A_APLCA3.030e-2867.7840S ribosomal protein S3a OS=Aplysia californica G... [more]
RS3A_YARLI3.957e-2862.2240S ribosomal protein S1 OS=Yarrowia lipolytica GN... [more]
RS3A_VANPO3.957e-2863.3340S ribosomal protein S1 OS=Vanderwaltozyma polysp... [more]
RS3A_PICGU3.957e-2862.2240S ribosomal protein S1 OS=Pichia guilliermondii ... [more]
RS3A_ASHGO3.957e-2863.3340S ribosomal protein S1 OS=Ashbya gossypii GN=RPS... [more]
RS3A_ZYGRC5.168e-2864.4440S ribosomal protein S1 OS=Zygosaccharomyces roux... [more]
RS3A_PICPG6.750e-2862.2240S ribosomal protein S1 OS=Pichia pastoris (strai... [more]
RS3A_BOMMO8.816e-2868.4840S ribosomal protein S3a OS=Bombyx mori PE=2 SV=1[more]
RS3A_UNCRE1.151e-2764.4440S ribosomal protein S1 OS=Uncinocarpus reesii (s... [more]

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Properties
Property NameValue
Genbank descriptionC02010D04SK IF1 Citrus clementina cDNA clone C02010D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289203 ID=CX289203; Name=CX289203; organism=Citrus clementina; type=EST; length=413bp
GAACGAGCTAGGACTAGGTAGCAGCGGAGCCGTCTCTTGAGCAGCAGCTG
CACAAACATGGCTGTCGGGAAGAACAAGAGGATTTCAAAGGGGAAGAAAG
GAGGCAAGAAGAAGGCTGCTGATCCGTTTGCCAAGAAGGACTGGTATGAT
ATCAAGGCTCCATCTTGTTTCCGCGTCAGAAATGTTGGCAAGACTCTTGT
TACCCGGACTCAGGGTACCAAGATTGCATCAGAAGGTCTCAAGCACAGAG
TGTTTGAGGTATCACTAGGTGATCTTCTCAATGAAGAAGAGCATGCTTAC
AGGAAGATCAGACTGAGAGCTGAAGATGTCCAAGGGAAGAATGTTTTGAC
TAACTTCTGGGGCATGAATTTCACTACAGACAAGCTGAGGTCTTTGGTTA
GGAAGTGGCATAC
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