CX289203

Overview
NameCX289203
Unique NameCX289203
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length413
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15237 contig Ccv1_Contig15237:17..429. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX289203 vs. ExPASy Swiss-Prot
Match: RS3A_TORRU (40S ribosomal protein S3a OS=Tortula ruralis GN=RPS3A PE=2 SV=3)

HSP 1 Score: 130.954 bits (328), Expect = 1.898e-30
Identity = 66/90 (73.33%), Postives = 73/90 (81.11%), Query Frame = 1 
Query:  139 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKW 408
            DWYDIKAP   R    G+    RT GTKIAS+GL  RVFEVSL DL N+E+ A+RKI+LRAEDVQGKNVLTNFWGM+FTTDKLRSLVRKW
Sbjct:   28 DWYDIKAPPRSRRARSGRRC-HRTAGTKIASDGLNFRVFEVSLADLQNDEDQAFRKIKLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKW 116
[Close]
BLAST of CX289203 vs. ExPASy Swiss-Prot
Match: RS3A_TAEGU (40S ribosomal protein S3a OS=Taeniopygia guttata GN=RPS3A PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 2.479e-30
Identity = 63/90 (70.00%), Postives = 75/90 (83.33%), Query Frame = 1 
Query:  139 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKW 408
            DWYD+KAP+ F +RN+GKTLVTRTQGTKIAS+GLK RVFEVSL DL N+E  A+RK +L  EDVQGKN LTNF GM+ T DK+ S+V+KW
Sbjct:   29 DWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVSLADLQNDEV-AFRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKW 117
[Close]
BLAST of CX289203 vs. ExPASy Swiss-Prot
Match: RS3A_RAT (40S ribosomal protein S3a OS=Rattus norvegicus GN=Rps3a PE=1 SV=2)

HSP 1 Score: 130.568 bits (327), Expect = 2.479e-30
Identity = 63/90 (70.00%), Postives = 75/90 (83.33%), Query Frame = 1 
Query:  139 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKW 408
            DWYD+KAP+ F +RN+GKTLVTRTQGTKIAS+GLK RVFEVSL DL N+E  A+RK +L  EDVQGKN LTNF GM+ T DK+ S+V+KW
Sbjct:   29 DWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVSLADLQNDEV-AFRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKW 117
[Close]
BLAST of CX289203 vs. ExPASy Swiss-Prot
Match: RS3A_MOUSE (40S ribosomal protein S3a OS=Mus musculus GN=Rps3a PE=1 SV=3)

HSP 1 Score: 130.568 bits (327), Expect = 2.479e-30
Identity = 63/90 (70.00%), Postives = 75/90 (83.33%), Query Frame = 1 
Query:  139 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKW 408
            DWYD+KAP+ F +RN+GKTLVTRTQGTKIAS+GLK RVFEVSL DL N+E  A+RK +L  EDVQGKN LTNF GM+ T DK+ S+V+KW
Sbjct:   29 DWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVSLADLQNDEV-AFRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKW 117
[Close]
BLAST of CX289203 vs. ExPASy Swiss-Prot
Match: RS3A_HUMAN (40S ribosomal protein S3a OS=Homo sapiens GN=RPS3A PE=1 SV=2)

HSP 1 Score: 130.568 bits (327), Expect = 2.479e-30
Identity = 63/90 (70.00%), Postives = 75/90 (83.33%), Query Frame = 1 
Query:  139 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKW 408
            DWYD+KAP+ F +RN+GKTLVTRTQGTKIAS+GLK RVFEVSL DL N+E  A+RK +L  EDVQGKN LTNF GM+ T DK+ S+V+KW
Sbjct:   29 DWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVSLADLQNDEV-AFRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKW 117
[Close]
BLAST of CX289203 vs. ExPASy Swiss-Prot
Match: RS3A_GECJA (40S ribosomal protein S3a OS=Gecko japonicus GN=RPS3A PE=2 SV=3)

HSP 1 Score: 130.568 bits (327), Expect = 2.479e-30
Identity = 63/90 (70.00%), Postives = 75/90 (83.33%), Query Frame = 1 
Query:  139 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKW 408
            DWYD+KAP+ F +RN+GKTLVTRTQGTKIAS+GLK RVFEVSL DL N+E  A+RK +L  EDVQGKN LTNF GM+ T DK+ S+V+KW
Sbjct:   29 DWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVSLADLQNDEV-AFRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKW 117
[Close]
BLAST of CX289203 vs. ExPASy Swiss-Prot
Match: RS3A_FELCA (40S ribosomal protein S3a (Fragment) OS=Felis catus GN=RPS3A PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 2.479e-30
Identity = 63/90 (70.00%), Postives = 75/90 (83.33%), Query Frame = 1 
Query:  139 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKW 408
            DWYD+KAP+ F +RN+GKTLVTRTQGTKIAS+GLK RVFEVSL DL N+E  A+RK +L  EDVQGKN LTNF GM+ T DK+ S+V+KW
Sbjct:   25 DWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVSLADLQNDEV-AFRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKW 113
[Close]
BLAST of CX289203 vs. ExPASy Swiss-Prot
Match: RS3A_EIMTE (40S ribosomal protein S3a OS=Eimeria tenella PE=2 SV=3)

HSP 1 Score: 130.568 bits (327), Expect = 2.479e-30
Identity = 63/90 (70.00%), Postives = 75/90 (83.33%), Query Frame = 1 
Query:  139 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKW 408
            DWYD+KAP+ F +RN+GKTLVTRTQGTKIAS+GLK RVFEVSL DL N+E  A+RK +L  EDVQGKN LTNF GM+ T DK+ S+V+KW
Sbjct:   29 DWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVSLADLQNDEV-AFRKFKLITEDVQGKNCLTNFHGMDLTRDKMFSMVKKW 117
[Close]
BLAST of CX289203 vs. ExPASy Swiss-Prot
Match: RS3A_BOVIN (40S ribosomal protein S3a OS=Bos taurus GN=RPS3A PE=2 SV=3)

HSP 1 Score: 130.568 bits (327), Expect = 2.479e-30
Identity = 63/90 (70.00%), Postives = 75/90 (83.33%), Query Frame = 1 
Query:  139 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKW 408
            DWYD+KAP+ F +RN+GKTLVTRTQGTKIAS+GLK RVFEVSL DL N+E  A+RK +L  EDVQGKN LTNF GM+ T DK+ S+V+KW
Sbjct:   29 DWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVSLADLQNDEV-AFRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKW 117
[Close]
BLAST of CX289203 vs. ExPASy Swiss-Prot
Match: RS3A2_PICST (40S ribosomal protein S1-B OS=Pichia stipitis GN=RPS1B PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 2.479e-30
Identity = 61/90 (67.78%), Postives = 75/90 (83.33%), Query Frame = 1 
Query:  139 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKW 408
            DW+DIKAPS F  RNVGKTL+ R+ G K A++GLK RV EVSL DL   E+H+YRKI+LR ++VQGKN+LTNF G++FT+DKLRSLVRKW
Sbjct:   28 DWFDIKAPSTFENRNVGKTLINRSTGLKNAADGLKGRVVEVSLADLQGSEDHSYRKIKLRVDEVQGKNLLTNFHGLDFTSDKLRSLVRKW 117
The following BLAST results are available for this feature:
BLAST of CX289203 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 157
Match NameE-valueIdentityDescription
RS3A_TORRU1.898e-3073.3340S ribosomal protein S3a OS=Tortula ruralis GN=RP... [more]
RS3A_TAEGU2.479e-3070.0040S ribosomal protein S3a OS=Taeniopygia guttata G... [more]
RS3A_RAT2.479e-3070.0040S ribosomal protein S3a OS=Rattus norvegicus GN=... [more]
RS3A_MOUSE2.479e-3070.0040S ribosomal protein S3a OS=Mus musculus GN=Rps3a... [more]
RS3A_HUMAN2.479e-3070.0040S ribosomal protein S3a OS=Homo sapiens GN=RPS3A... [more]
RS3A_GECJA2.479e-3070.0040S ribosomal protein S3a OS=Gecko japonicus GN=RP... [more]
RS3A_FELCA2.479e-3070.0040S ribosomal protein S3a (Fragment) OS=Felis catu... [more]
RS3A_EIMTE2.479e-3070.0040S ribosomal protein S3a OS=Eimeria tenella PE=2 ... [more]
RS3A_BOVIN2.479e-3070.0040S ribosomal protein S3a OS=Bos taurus GN=RPS3A P... [more]
RS3A2_PICST2.479e-3067.7840S ribosomal protein S1-B OS=Pichia stipitis GN=R... [more]

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Properties
Property NameValue
Genbank descriptionC02010D04SK IF1 Citrus clementina cDNA clone C02010D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289203 ID=CX289203; Name=CX289203; organism=Citrus clementina; type=EST; length=413bp
GAACGAGCTAGGACTAGGTAGCAGCGGAGCCGTCTCTTGAGCAGCAGCTG
CACAAACATGGCTGTCGGGAAGAACAAGAGGATTTCAAAGGGGAAGAAAG
GAGGCAAGAAGAAGGCTGCTGATCCGTTTGCCAAGAAGGACTGGTATGAT
ATCAAGGCTCCATCTTGTTTCCGCGTCAGAAATGTTGGCAAGACTCTTGT
TACCCGGACTCAGGGTACCAAGATTGCATCAGAAGGTCTCAAGCACAGAG
TGTTTGAGGTATCACTAGGTGATCTTCTCAATGAAGAAGAGCATGCTTAC
AGGAAGATCAGACTGAGAGCTGAAGATGTCCAAGGGAAGAATGTTTTGAC
TAACTTCTGGGGCATGAATTTCACTACAGACAAGCTGAGGTCTTTGGTTA
GGAAGTGGCATAC
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