CX289203

Overview
NameCX289203
Unique NameCX289203
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length413
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15237 contig Ccv1_Contig15237:17..429. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX289203 vs. ExPASy Swiss-Prot
Match: RS3A_PYRTR (40S ribosomal protein S1 OS=Pyrenophora tritici-repentis (strain Pt-1C-BFP) GN=rps1 PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 3.237e-30
Identity = 60/90 (66.67%), Postives = 75/90 (83.33%), Query Frame = 1
Query:  139 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKW 408
            DWY+IKAP  F VR+VGKTLV RT G K A++ LK R+FEVSL DL  +E+HA+RK++LR ++VQGKN LTNF G++FT+DKLRSLVRKW
Sbjct:   27 DWYNIKAPGTFAVRDVGKTLVNRTTGLKNANDALKGRIFEVSLADLQKDEDHAFRKVKLRVDEVQGKNCLTNFHGLDFTSDKLRSLVRKW 116          
BLAST of CX289203 vs. ExPASy Swiss-Prot
Match: RS3A_NEOFI (40S ribosomal protein S1 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=rps1 PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 3.237e-30
Identity = 60/90 (66.67%), Postives = 76/90 (84.44%), Query Frame = 1
Query:  139 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKW 408
            D Y +KAPS F++R+VGKTLV RT G K A++ LK R+FEVSL DL N+E+HA+RK++LR ++VQGKN LTNF G++FTTDKLRSLVRKW
Sbjct:   28 DEYSVKAPSTFQIRDVGKTLVNRTSGLKNANDSLKGRIFEVSLADLQNDEDHAFRKVKLRVDEVQGKNCLTNFHGLDFTTDKLRSLVRKW 117          
BLAST of CX289203 vs. ExPASy Swiss-Prot
Match: RS3A_LACBS (40S ribosomal protein S1 OS=Laccaria bicolor (strain S238N-H82) GN=RPS1 PE=3 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 3.237e-30
Identity = 61/90 (67.78%), Postives = 74/90 (82.22%), Query Frame = 1
Query:  139 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKW 408
            DWYDIKAPS F VRNVGKTL  R+QG K A++ LK R+ EVSL DL  +EE ++RKI+LR +++QGKN LTNF GM+FT+DKLRSLVRKW
Sbjct:   28 DWYDIKAPSIFEVRNVGKTLANRSQGLKNANDSLKGRIIEVSLADLNKDEEQSFRKIKLRIDEIQGKNCLTNFHGMDFTSDKLRSLVRKW 117          
BLAST of CX289203 vs. ExPASy Swiss-Prot
Match: RS3A_CANTT (40S ribosomal protein S1 OS=Candida tropicalis (strain ATCC MYA-3404 / T1) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 3.237e-30
Identity = 60/90 (66.67%), Postives = 75/90 (83.33%), Query Frame = 1
Query:  139 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKW 408
            DW+DIKAP+ F  RNVGKTL+ R+ G K A++GLK RVFEV L DL   E+H+YRKI+LR ++VQGKN+LTNF G++FT+DKLRSLVRKW
Sbjct:   28 DWFDIKAPTTFENRNVGKTLINRSTGLKNAADGLKGRVFEVCLADLQGSEDHSYRKIKLRVDEVQGKNLLTNFHGLDFTSDKLRSLVRKW 117          
BLAST of CX289203 vs. ExPASy Swiss-Prot
Match: RS3A_CANDC (40S ribosomal protein S1 OS=Candida dubliniensis (strain CD36 / CBS 7987 / NCPF 3949 / NRRL Y-17841) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 3.237e-30
Identity = 60/90 (66.67%), Postives = 75/90 (83.33%), Query Frame = 1
Query:  139 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKW 408
            DW+DIKAP+ F  RNVGKTL+ R+ G K A++GLK RVFEV L DL   E+H+YRKI+LR ++VQGKN+LTNF G++FT+DKLRSLVRKW
Sbjct:   28 DWFDIKAPTTFENRNVGKTLINRSTGLKNAADGLKGRVFEVCLADLQGSEDHSYRKIKLRVDEVQGKNLLTNFHGLDFTSDKLRSLVRKW 117          
BLAST of CX289203 vs. ExPASy Swiss-Prot
Match: RS3A_CANAW (40S ribosomal protein S1 OS=Candida albicans (strain WO-1) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 3.237e-30
Identity = 60/90 (66.67%), Postives = 75/90 (83.33%), Query Frame = 1
Query:  139 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKW 408
            DW+DIKAP+ F  RNVGKTL+ R+ G K A++GLK RVFEV L DL   E+H+YRKI+LR ++VQGKN+LTNF G++FT+DKLRSLVRKW
Sbjct:   28 DWFDIKAPTTFENRNVGKTLINRSTGLKNAADGLKGRVFEVCLADLQGSEDHSYRKIKLRVDEVQGKNLLTNFHGLDFTSDKLRSLVRKW 117          
BLAST of CX289203 vs. ExPASy Swiss-Prot
Match: RS3A_CANAL (40S ribosomal protein S1 OS=Candida albicans GN=RPS1 PE=3 SV=3)

HSP 1 Score: 130.183 bits (326), Expect = 3.237e-30
Identity = 60/90 (66.67%), Postives = 75/90 (83.33%), Query Frame = 1
Query:  139 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKW 408
            DW+DIKAP+ F  RNVGKTL+ R+ G K A++GLK RVFEV L DL   E+H+YRKI+LR ++VQGKN+LTNF G++FT+DKLRSLVRKW
Sbjct:   28 DWFDIKAPTTFENRNVGKTLINRSTGLKNAADGLKGRVFEVCLADLQGSEDHSYRKIKLRVDEVQGKNLLTNFHGLDFTSDKLRSLVRKW 117          
BLAST of CX289203 vs. ExPASy Swiss-Prot
Match: RS3A_ASPFU (40S ribosomal protein S1 OS=Aspergillus fumigatus GN=rps1 PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 3.237e-30
Identity = 60/90 (66.67%), Postives = 76/90 (84.44%), Query Frame = 1
Query:  139 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKW 408
            D Y +KAPS F++R+VGKTLV RT G K A++ LK R+FEVSL DL N+E+HA+RK++LR ++VQGKN LTNF G++FTTDKLRSLVRKW
Sbjct:   28 DEYSVKAPSTFQIRDVGKTLVNRTSGLKNANDSLKGRIFEVSLADLQNDEDHAFRKVKLRVDEVQGKNCLTNFHGLDFTTDKLRSLVRKW 117          
BLAST of CX289203 vs. ExPASy Swiss-Prot
Match: RS3A_ASPFC (40S ribosomal protein S1 OS=Aspergillus fumigatus (strain CEA10 / CBS 144.89 / FGSC A1163) GN=rps1 PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 3.237e-30
Identity = 60/90 (66.67%), Postives = 76/90 (84.44%), Query Frame = 1
Query:  139 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKW 408
            D Y +KAPS F++R+VGKTLV RT G K A++ LK R+FEVSL DL N+E+HA+RK++LR ++VQGKN LTNF G++FTTDKLRSLVRKW
Sbjct:   28 DEYSVKAPSTFQIRDVGKTLVNRTSGLKNANDSLKGRIFEVSLADLQNDEDHAFRKVKLRVDEVQGKNCLTNFHGLDFTTDKLRSLVRKW 117          
BLAST of CX289203 vs. ExPASy Swiss-Prot
Match: RS3A_XENTR (40S ribosomal protein S3a OS=Xenopus tropicalis GN=rps3a PE=2 SV=3)

HSP 1 Score: 129.798 bits (325), Expect = 4.228e-30
Identity = 63/90 (70.00%), Postives = 75/90 (83.33%), Query Frame = 1
Query:  139 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKW 408
            DWYD+KAP+ F +RN+GKTLVTRTQGTKIAS+GLK RVFEVSL DL N+E  A+RK +L  EDVQGKN LTNF GM+ T DK+ S+V+KW
Sbjct:   29 DWYDVKAPAMFNIRNLGKTLVTRTQGTKIASDGLKGRVFEVSLADLQNDEV-AFRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKW 117          
The following BLAST results are available for this feature:
BLAST of CX289203 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 157
Match NameE-valueIdentityDescription
RS3A_PYRTR3.237e-3066.6740S ribosomal protein S1 OS=Pyrenophora tritici-re... [more]
RS3A_NEOFI3.237e-3066.6740S ribosomal protein S1 OS=Neosartorya fischeri (... [more]
RS3A_LACBS3.237e-3067.7840S ribosomal protein S1 OS=Laccaria bicolor (stra... [more]
RS3A_CANTT3.237e-3066.6740S ribosomal protein S1 OS=Candida tropicalis (st... [more]
RS3A_CANDC3.237e-3066.6740S ribosomal protein S1 OS=Candida dubliniensis (... [more]
RS3A_CANAW3.237e-3066.6740S ribosomal protein S1 OS=Candida albicans (stra... [more]
RS3A_CANAL3.237e-3066.6740S ribosomal protein S1 OS=Candida albicans GN=RP... [more]
RS3A_ASPFU3.237e-3066.6740S ribosomal protein S1 OS=Aspergillus fumigatus ... [more]
RS3A_ASPFC3.237e-3066.6740S ribosomal protein S1 OS=Aspergillus fumigatus ... [more]
RS3A_XENTR4.228e-3070.0040S ribosomal protein S3a OS=Xenopus tropicalis GN... [more]

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Properties
Property NameValue
Genbank descriptionC02010D04SK IF1 Citrus clementina cDNA clone C02010D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289203 ID=CX289203; Name=CX289203; organism=Citrus clementina; type=EST; length=413bp
GAACGAGCTAGGACTAGGTAGCAGCGGAGCCGTCTCTTGAGCAGCAGCTG
CACAAACATGGCTGTCGGGAAGAACAAGAGGATTTCAAAGGGGAAGAAAG
GAGGCAAGAAGAAGGCTGCTGATCCGTTTGCCAAGAAGGACTGGTATGAT
ATCAAGGCTCCATCTTGTTTCCGCGTCAGAAATGTTGGCAAGACTCTTGT
TACCCGGACTCAGGGTACCAAGATTGCATCAGAAGGTCTCAAGCACAGAG
TGTTTGAGGTATCACTAGGTGATCTTCTCAATGAAGAAGAGCATGCTTAC
AGGAAGATCAGACTGAGAGCTGAAGATGTCCAAGGGAAGAATGTTTTGAC
TAACTTCTGGGGCATGAATTTCACTACAGACAAGCTGAGGTCTTTGGTTA
GGAAGTGGCATAC
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