CX289203

Overview
NameCX289203
Unique NameCX289203
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length413
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15237 contig Ccv1_Contig15237:17..429. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX289203 vs. ExPASy Swiss-Prot
Match: RS3A_CRYNE (40S ribosomal protein S1 OS=Cryptococcus neoformans GN=RPS1 PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 2.741e-29
Identity = 60/90 (66.67%), Postives = 74/90 (82.22%), Query Frame = 1
Query:  139 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKW 408
            +WYDIKAPS F  RN GKTLV RTQG K A++ LK RV E+SL DL N++E ++RKI+LR EDV GK+ LT+F+GM+FTTDKLRS+VRKW
Sbjct:   28 EWYDIKAPSFFENRNAGKTLVNRTQGLKNANDSLKGRVLELSLADLNNDQEQSFRKIKLRVEDVAGKSCLTSFYGMDFTTDKLRSIVRKW 117          
BLAST of CX289203 vs. ExPASy Swiss-Prot
Match: RS3A_CULQU (40S ribosomal protein S3a OS=Culex quinquefasciatus GN=CPIJ008584 PE=3 SV=2)

HSP 1 Score: 126.716 bits (317), Expect = 3.579e-29
Identity = 62/92 (67.39%), Postives = 74/92 (80.43%), Query Frame = 1
Query:  139 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLN--EEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKW 408
            DWYD+KAP+ F  R VGKTLV RTQGT+IAS+GLK RVFEVSL DL N  + E ++RK +L AEDV G+NVL NF GM+ TTDKLRS+V+KW
Sbjct:   29 DWYDVKAPNMFSCRQVGKTLVNRTQGTRIASDGLKGRVFEVSLADLQNDTDAERSFRKFKLIAEDVHGRNVLCNFHGMDLTTDKLRSMVKKW 120          
BLAST of CX289203 vs. ExPASy Swiss-Prot
Match: RS3A_CANGA (40S ribosomal protein S1 OS=Candida glabrata GN=RPS1 PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 3.579e-29
Identity = 59/90 (65.56%), Postives = 72/90 (80.00%), Query Frame = 1
Query:  139 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKW 408
            +WYDIKAPS F  RNVGKTLV ++ G K AS+ LK RV EV L DL   E+H++RK++LR +DVQGKN+LTNF GM+FT DKLRS+VRKW
Sbjct:   28 EWYDIKAPSTFENRNVGKTLVNKSTGLKSASDALKGRVVEVCLADLQGSEDHSFRKVKLRVDDVQGKNLLTNFHGMDFTADKLRSMVRKW 117          
BLAST of CX289203 vs. ExPASy Swiss-Prot
Match: RS3A1_PICST (40S ribosomal protein S1-A OS=Pichia stipitis GN=RPS1A PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 3.579e-29
Identity = 57/90 (63.33%), Postives = 74/90 (82.22%), Query Frame = 1
Query:  139 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKW 408
            DW+DIKAPS F  RNVGKTL+ R+ G K A++GLK R+ EV+L DL   E+H+YR ++LR ++VQGKN+LTNF G++FT+DKLRSLVRKW
Sbjct:   28 DWFDIKAPSTFENRNVGKTLINRSTGMKNAADGLKGRIVEVNLADLQGSEDHSYRNVKLRVDEVQGKNLLTNFHGLSFTSDKLRSLVRKW 117          
BLAST of CX289203 vs. ExPASy Swiss-Prot
Match: RS3A_KLULA (40S ribosomal protein S1 OS=Kluyveromyces lactis GN=RPS1 PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 4.675e-29
Identity = 59/90 (65.56%), Postives = 73/90 (81.11%), Query Frame = 1
Query:  139 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKW 408
            +WYDIKAPS F  RNVGKTLV ++ G K AS+ LK RV EV L DL   E+H++RK++LR ++VQGKN+LTNF GM+FTTDKLRS+VRKW
Sbjct:   28 EWYDIKAPSTFENRNVGKTLVNKSVGLKNASDSLKGRVVEVCLADLQGSEDHSFRKVKLRVDEVQGKNLLTNFHGMDFTTDKLRSMVRKW 117          
BLAST of CX289203 vs. ExPASy Swiss-Prot
Match: RS3A_ANOGA (40S ribosomal protein S3a OS=Anopheles gambiae GN=RpS3A PE=2 SV=3)

HSP 1 Score: 126.331 bits (316), Expect = 4.675e-29
Identity = 63/92 (68.48%), Postives = 74/92 (80.43%), Query Frame = 1
Query:  139 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNE--EEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKW 408
            DWYD+KAP+ F+ R VGKTLV RTQGTKIAS+GLK RVFEVSL DL NE   E ++RK +L AE V G++VLTNF GM  TTDKLRS+V+KW
Sbjct:   29 DWYDVKAPNMFKNRQVGKTLVNRTQGTKIASDGLKGRVFEVSLADLQNEPDAERSFRKFKLVAESVNGRDVLTNFHGMALTTDKLRSMVKKW 120          
BLAST of CX289203 vs. ExPASy Swiss-Prot
Match: RS3A_SCHJY (40S ribosomal protein S1 OS=Schizosaccharomyces japonicus (strain yFS275 / FY16936) GN=rps1 PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 6.105e-29
Identity = 60/90 (66.67%), Postives = 72/90 (80.00%), Query Frame = 1
Query:  139 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKW 408
            DWYDIKAPS F V+NVGKTLV RT G K A++ LK R+ EVSL DL  +EEH++RK++LR +DVQGK  LT F GM+ T+DKLRSLVRKW
Sbjct:   28 DWYDIKAPSFFEVKNVGKTLVNRTAGLKNANDALKGRIVEVSLADLQKDEEHSFRKVKLRVDDVQGKACLTTFNGMSMTSDKLRSLVRKW 117          
BLAST of CX289203 vs. ExPASy Swiss-Prot
Match: RS3A_PODAN (40S ribosomal protein S1 OS=Podospora anserina GN=RPS1 PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 6.105e-29
Identity = 58/90 (64.44%), Postives = 74/90 (82.22%), Query Frame = 1
Query:  139 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKW 408
            DWY IKAP+ F +R+VGKTLV RT G K A++ LK R+ EVSL DL  +E+HA+RK++LR ++VQGKN LTNF G++FT+DKLRSLVRKW
Sbjct:   28 DWYGIKAPAPFAIRDVGKTLVNRTTGLKNANDALKGRIVEVSLADLQKDEDHAFRKVKLRVDEVQGKNCLTNFHGLDFTSDKLRSLVRKW 117          
BLAST of CX289203 vs. ExPASy Swiss-Prot
Match: RS3A_AEDAE (40S ribosomal protein S3a OS=Aedes aegypti GN=AAEL005901 PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 6.105e-29
Identity = 62/92 (67.39%), Postives = 74/92 (80.43%), Query Frame = 1
Query:  139 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLN--EEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKW 408
            DWYD+KAP+ F  R VGKTLV RTQGT+IAS+GLK RVFEVSL DL N  + E ++RK +L AEDV G+NVL NF GM+ TTDKLRS+V+KW
Sbjct:   29 DWYDVKAPNMFSNRQVGKTLVNRTQGTRIASDGLKGRVFEVSLADLQNDTDAERSFRKFKLIAEDVHGRNVLCNFHGMDLTTDKLRSMVKKW 120          
BLAST of CX289203 vs. ExPASy Swiss-Prot
Match: RS3A2_SCHPO (40S ribosomal protein S1-B OS=Schizosaccharomyces pombe GN=rps102 PE=1 SV=3)

HSP 1 Score: 125.946 bits (315), Expect = 6.105e-29
Identity = 58/90 (64.44%), Postives = 74/90 (82.22%), Query Frame = 1
Query:  139 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKW 408
            +WYDIKAP+ F V+NVGKTLV RT G K A++ LK R+ EVSL DL  +EEHA+RK++LR ED+QGK+ LT+F G++ T+DKLRSLVRKW
Sbjct:   28 EWYDIKAPAFFEVKNVGKTLVNRTAGLKNANDSLKGRILEVSLADLQKDEEHAFRKVKLRVEDIQGKSCLTSFNGLSITSDKLRSLVRKW 117          
The following BLAST results are available for this feature:
BLAST of CX289203 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 157
Match NameE-valueIdentityDescription
RS3A_CRYNE2.741e-2966.6740S ribosomal protein S1 OS=Cryptococcus neoforman... [more]
RS3A_CULQU3.579e-2967.3940S ribosomal protein S3a OS=Culex quinquefasciatu... [more]
RS3A_CANGA3.579e-2965.5640S ribosomal protein S1 OS=Candida glabrata GN=RP... [more]
RS3A1_PICST3.579e-2963.3340S ribosomal protein S1-A OS=Pichia stipitis GN=R... [more]
RS3A_KLULA4.675e-2965.5640S ribosomal protein S1 OS=Kluyveromyces lactis G... [more]
RS3A_ANOGA4.675e-2968.4840S ribosomal protein S3a OS=Anopheles gambiae GN=... [more]
RS3A_SCHJY6.105e-2966.6740S ribosomal protein S1 OS=Schizosaccharomyces ja... [more]
RS3A_PODAN6.105e-2964.4440S ribosomal protein S1 OS=Podospora anserina GN=... [more]
RS3A_AEDAE6.105e-2967.3940S ribosomal protein S3a OS=Aedes aegypti GN=AAEL... [more]
RS3A2_SCHPO6.105e-2964.4440S ribosomal protein S1-B OS=Schizosaccharomyces ... [more]

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Properties
Property NameValue
Genbank descriptionC02010D04SK IF1 Citrus clementina cDNA clone C02010D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289203 ID=CX289203; Name=CX289203; organism=Citrus clementina; type=EST; length=413bp
GAACGAGCTAGGACTAGGTAGCAGCGGAGCCGTCTCTTGAGCAGCAGCTG
CACAAACATGGCTGTCGGGAAGAACAAGAGGATTTCAAAGGGGAAGAAAG
GAGGCAAGAAGAAGGCTGCTGATCCGTTTGCCAAGAAGGACTGGTATGAT
ATCAAGGCTCCATCTTGTTTCCGCGTCAGAAATGTTGGCAAGACTCTTGT
TACCCGGACTCAGGGTACCAAGATTGCATCAGAAGGTCTCAAGCACAGAG
TGTTTGAGGTATCACTAGGTGATCTTCTCAATGAAGAAGAGCATGCTTAC
AGGAAGATCAGACTGAGAGCTGAAGATGTCCAAGGGAAGAATGTTTTGAC
TAACTTCTGGGGCATGAATTTCACTACAGACAAGCTGAGGTCTTTGGTTA
GGAAGTGGCATAC
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