CX289212

Overview
NameCX289212
Unique NameCX289212
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length434
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289212 vs. ExPASy Swiss-Prot
Match: MTNA_HERA2 (Methylthioribose-1-phosphate isomerase OS=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) GN=mtnA PE=3 SV=2)

HSP 1 Score: 124.79 bits (312), Expect = 1.497e-28
Identity = 71/143 (49.65%), Postives = 86/143 (60.14%), Query Frame = 3
Query:    6 AEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPXXXXXXXXXXXLMKDGRVSAVIVGADRVAANGDTTNKIGTYSLALCAKFHN 434
            AE +   D A  +AIG +G   L  Q +N    VLTHCN G LATA YGTAL  IRA+H +G     +  ETRPF QG+RLTA+EL    I             M+ G+V  +IVG+DR+AANGD  NKIGTY LA+ AK HN
Sbjct:  126 AEAIRDQDEAMCRAIGQHGKVLLA-QSRN----VLTHCNAGGLATAAYGTALAPIRAVHEDGQPIHVWVDETRPFLQGARLTAWELQQAGIDLTLITDNMAAYFMQQGQVDCIIVGSDRIAANGDVANKIGTYGLAVLAKAHN 263          
BLAST of CX289212 vs. ExPASy Swiss-Prot
Match: MTNA_HAHCH (Methylthioribose-1-phosphate isomerase OS=Hahella chejuensis (strain KCTC 2396) GN=mtnA PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 1.956e-28
Identity = 64/137 (46.72%), Postives = 87/137 (63.50%), Query Frame = 3
Query:   21 KDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPXXXXXXXXXXXLMKDGRVSAVIVGADRVAANGDTTNKIGTYSLALCAKFH 431
            ++D+  N  +G  GA  +    ++ + ++LTHCNTGSLAT GYGTALGVIR+ +   ++   +  ETRP+ QG+RLTA+EL  D IP           +MK   V  VIVGADR+ A+GD  NKIGTY LA+ A+ H
Sbjct:  125 EEDLQANLTMGELGADLIA---ESGRGALLTHCNTGSLATGGYGTALGVIRSAYRRDLVTEVFADETRPWLQGARLTAWELCQDDIPVKLIADSAAAHVMKTCAVKWVIVGADRITAHGDVANKIGTYGLAVLARHH 258          
BLAST of CX289212 vs. ExPASy Swiss-Prot
Match: MTNA_DESAD (Methylthioribose-1-phosphate isomerase OS=Desulfovibrio salexigens (strain ATCC 14822 / DSM 2638 / NCIB 8403 / VKM B-1763) GN=mtnA PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 1.956e-28
Identity = 66/134 (49.25%), Postives = 83/134 (61.94%), Query Frame = 3
Query:   24 DDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPXXXXXXXXXXXLMKDGRVSAVIVGADRVAANGDTTNKIGTYSLALCAK 425
            DD+   + IG +G      +L +   +++THCN G+LATAGYGTALGV+R    +G       +ETRPF QG+RLTA+EL  D IP           LMK G V  V+VGADRV ANGD  NKIGTY +AL A+
Sbjct:  130 DDIRMCEDIGKFGG-----ELMDDGDTIMTHCNAGALATAGYGTALGVVRGAVDQGKKVSVIANETRPFLQGARLTAYELHRDGIPVKVACDNACALLMKKGLVQKVVVGADRVTANGDAVNKIGTYGVALLAR 258          
BLAST of CX289212 vs. ExPASy Swiss-Prot
Match: MTNA_DEHSB (Methylthioribose-1-phosphate isomerase OS=Dehalococcoides sp. (strain BAV1) GN=mtnA PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 1.956e-28
Identity = 70/143 (48.95%), Postives = 90/143 (62.94%), Query Frame = 3
Query:    3 AAEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPXXXXXXXXXXXLMKDGRVSAVIVGADRVAANGDTTNKIGTYSLALCAKFH 431
            A +I  +++ A+ K I ++GA  +Q       ++VLTHCN G LATAGYGTALGVI A H +     A+ +ETRP  QG+RLTA EL    +P            MK G ++AV+VGADR+A NGDT NKIGTYSLA+ A  H
Sbjct:  121 AVKIHREEEEASRK-ISTFGADLIQ-----PGWTVLTHCNAGPLATAGYGTALGVIIAAHQQNKGISAFATETRPLLQGARLTALELKEAGVPFKLITDSMAGHFMKKGVINAVVVGADRIARNGDTANKIGTYSLAVLALAH 257          
BLAST of CX289212 vs. ExPASy Swiss-Prot
Match: MTNA_RHOBA (Methylthioribose-1-phosphate isomerase OS=Rhodopirellula baltica GN=mtnA PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 2.554e-28
Identity = 69/137 (50.36%), Postives = 85/137 (62.04%), Query Frame = 3
Query:   24 DDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPXXXXXXXXXXXLMKDGRVSAVIVGADRVAANGDTTNKIGTYSLALCAKFHN 434
            DD    ++IG +GA+ L +       SV+THCN GSLAT+ +GTAL  +  LH  G     +  ETRP  QG+RLTA+EL    IP           LM+ GRV AVIVGADR+AANGD  NKIGTY LA+ AK+HN
Sbjct:  138 DDRQMCRSIGCHGATLLADCK-----SVMTHCNAGSLATSMWGTALAPMYHLHESGHSLEVFADETRPLLQGARLTAWELHQAGIPVTVCTDSMSGSLMRQGRVDAVIVGADRIAANGDVANKIGTYPLAVLAKYHN 269          
BLAST of CX289212 vs. ExPASy Swiss-Prot
Match: MTNA_DEHSC (Methylthioribose-1-phosphate isomerase OS=Dehalococcoides sp. (strain CBDB1) GN=mtnA PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 2.554e-28
Identity = 66/137 (48.18%), Postives = 86/137 (62.77%), Query Frame = 3
Query:   21 KDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPXXXXXXXXXXXLMKDGRVSAVIVGADRVAANGDTTNKIGTYSLALCAKFH 431
            +++   ++ I ++GA  +Q       ++VLTHCN G LATAGYGTALGVI A H +     A+ +ETRP  QG+RLTA EL    +P            MK G ++AV+VGADR+A NGDT NKIGTYSLA+ A  H
Sbjct:  126 REEEEASRKISTFGADLIQ-----PGWTVLTHCNAGPLATAGYGTALGVIIAAHQQNKGISAFATETRPLLQGARLTALELKEAGVPFKLITDSMAGHFMKKGVINAVVVGADRIARNGDTANKIGTYSLAVLALAH 257          
BLAST of CX289212 vs. ExPASy Swiss-Prot
Match: MTNA_SORC5 (Methylthioribose-1-phosphate isomerase OS=Sorangium cellulosum (strain So ce56) GN=mtnA PE=3 SV=2)

HSP 1 Score: 123.635 bits (309), Expect = 3.336e-28
Identity = 68/137 (49.64%), Postives = 82/137 (59.85%), Query Frame = 3
Query:   21 KDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPXXXXXXXXXXXLMKDGRVSAVIVGADRVAANGDTTNKIGTYSLALCAKFH 431
            ++DVA    +G  GA+ L         +VLTHCN G+LAT GYGTALGVIRA    G   R    ETRP+ QG+RLTA+EL  D IP            M+ G + AV+VGADR+A NGD  NKIGTY LA  A+ H
Sbjct:  118 REDVAACHQMGRAGAARLPES-----GTVLTHCNAGALATGGYGTALGVIRAAIEAGKALRVLACETRPYLQGARLTAWELQRDGIPVEVISDSMAAWFMQKGEIGAVVVGADRIARNGDVANKIGTYGLACLARHH 249          
BLAST of CX289212 vs. ExPASy Swiss-Prot
Match: MTNA_SYNFM (Methylthioribose-1-phosphate isomerase OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) GN=mtnA PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 4.357e-28
Identity = 67/142 (47.18%), Postives = 87/142 (61.27%), Query Frame = 3
Query:    6 AEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPXXXXXXXXXXXLMKDGRVSAVIVGADRVAANGDTTNKIGTYSLALCAKFH 431
            A+++L +DVA N AIGS+G + +          ++T+CN G+LATA YGTA+GVIRA        R +  ETRPF QG+RLT +EL+   IP           LM  G +  V+VGADR+AANGDT NKIGTY  A+ A  H
Sbjct:  128 ADLILAEDVAGNVAIGSWGKTVIPRGA-----GIMTYCNAGALATADYGTAVGVIRAAFDADPGIRVFSCETRPFLQGARLTVYELMKAGIPVTLITDNSIGSLMSRGMIDVVVVGADRIAANGDTANKIGTYMAAVLACTH 264          
BLAST of CX289212 vs. ExPASy Swiss-Prot
Match: MTNA_ENTS8 (Methylthioribose-1-phosphate isomerase OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=mtnA PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 4.357e-28
Identity = 64/110 (58.18%), Postives = 72/110 (65.45%), Query Frame = 3
Query:  105 VLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPXXXXXXXXXXXLMKDGRVSAVIVGADRVAANGDTTNKIGTYSLALCAKFHN 434
            +LTHCNTG LATAG GTALGVI   H  G +   +  ETRP  QG RLTA+EL    +P           LM  G+V AV VGADR+AANGD  NKIGTYSLA+ AKFHN
Sbjct:  144 LLTHCNTGGLATAGVGTALGVIARAHEAGKVANVWVDETRPLLQGGRLTAWELGELGVPYQLITDSMAASLMAQGQVDAVWVGADRIAANGDVANKIGTYSLAVLAKFHN 253          
BLAST of CX289212 vs. ExPASy Swiss-Prot
Match: MTNA_AZOVD (Methylthioribose-1-phosphate isomerase OS=Azotobacter vinelandii (strain DJ / ATCC BAA-1303) GN=mtnA PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 4.357e-28
Identity = 65/137 (47.45%), Postives = 84/137 (61.31%), Query Frame = 3
Query:   21 KDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPXXXXXXXXXXXLMKDGRVSAVIVGADRVAANGDTTNKIGTYSLALCAKFH 431
            + D   N  +   G   ++     S  ++LTHCNTG+LAT G+GTALGVIRA   EG+++R Y  ETRP+ QG+RLTA+EL  + IP           LMK   ++ VIVGADR+ A GD  NKIGTY LA+ A  H
Sbjct:  135 ESDREANLTMAQLGLELIRKH-SGSPQALLTHCNTGALATGGFGTALGVIRAAWLEGLVDRVYADETRPWLQGARLTAWELAEEGIPVSLNADGAAAHLMKTKGITWVIVGADRITAEGDVANKIGTYQLAVVAMHH 270          
The following BLAST results are available for this feature:
BLAST of CX289212 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 211
Match NameE-valueIdentityDescription
MTNA_HERA21.497e-2849.65Methylthioribose-1-phosphate isomerase OS=Herpetos... [more]
MTNA_HAHCH1.956e-2846.72Methylthioribose-1-phosphate isomerase OS=Hahella ... [more]
MTNA_DESAD1.956e-2849.25Methylthioribose-1-phosphate isomerase OS=Desulfov... [more]
MTNA_DEHSB1.956e-2848.95Methylthioribose-1-phosphate isomerase OS=Dehaloco... [more]
MTNA_RHOBA2.554e-2850.36Methylthioribose-1-phosphate isomerase OS=Rhodopir... [more]
MTNA_DEHSC2.554e-2848.18Methylthioribose-1-phosphate isomerase OS=Dehaloco... [more]
MTNA_SORC53.336e-2849.64Methylthioribose-1-phosphate isomerase OS=Sorangiu... [more]
MTNA_SYNFM4.357e-2847.18Methylthioribose-1-phosphate isomerase OS=Syntroph... [more]
MTNA_ENTS84.357e-2858.18Methylthioribose-1-phosphate isomerase OS=Enteroba... [more]
MTNA_AZOVD4.357e-2847.45Methylthioribose-1-phosphate isomerase OS=Azotobac... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC02010E01SK IF1 Citrus clementina cDNA clone C02010E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289212 ID=CX289212; Name=CX289212; organism=Citrus clementina; type=EST; length=434bp
AAGCTGCTGAAATTATGCTCAAAGATGATGTTGCTACAAACAAAGCTATT
GGTTCTTATGGGGCAAGTTTTCTTCAGAACCAGCTCAAAAATTCTAAATT
CTCTGTTCTTACTCATTGCAACACTGGCAGTCTTGCAACAGCTGGATATG
GTACCGCCCTTGGTGTGATCCGTGCACTTCATTCTGAGGGAGTGTTAGAA
AGAGCTTATTGCTCTGAAACACGTCCATTCAACCAAGGATCTAGACTCAC
TGCTTTTGAGTTGGTACATGATCGCATACCAGCTACTCTTATAGCCGACT
CTGCTGCGGCTGCATTGATGAAAGATGGTCGTGTGAGTGCTGTCATTGTC
GGAGCAGATCGAGTGGCTGCAAATGGTGACACTACTAACAAGATTGGAAC
CTACAGCCTTGCATTATGTGCAAAGTTTCATAAT
back to top