CX289212

Overview
NameCX289212
Unique NameCX289212
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length434
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289212 vs. ExPASy Swiss-Prot
Match: MTNA1_PETMO (Methylthioribose-1-phosphate isomerase 1 OS=Petrotoga mobilis (strain DSM 10674 / SJ95) GN=mtnA1 PE=3 SV=2)

HSP 1 Score: 117.087 bits (292), Expect = 3.122e-26
Identity = 64/140 (45.71%), Postives = 84/140 (60.00%), Query Frame = 3
Query:    6 AEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPXXXXXXXXXXXLMKDGRVSAVIVGADRVAANGDTTNKIGTYSLALCAK 425
            +E +  +D   +KAIG +G S L+  +      +LTHCN G LA++GYGTAL  I   H +G   + Y  ETRP  QG+RLT +EL    I            +MK+G++ AV+VG DRVAANGDT NKIGT  LA+ AK
Sbjct:  127 SEKIFAEDQEMSKAIGKHGLSLLKPGM-----GLLTHCNAGGLASSGYGTALAPIYLGHEKGYNFKVYADETRPLLQGARLTTYELYKAGIDVTLICDDMASLVMKEGKIDAVLVGCDRVAANGDTANKIGTSGLAVLAK 261          
BLAST of CX289212 vs. ExPASy Swiss-Prot
Match: MTNA_YEAST (Methylthioribose-1-phosphate isomerase OS=Saccharomyces cerevisiae GN=MRI1 PE=1 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 6.955e-26
Identity = 69/160 (43.12%), Postives = 93/160 (58.13%), Query Frame = 3
Query:   15 MLKDDVATNKAIGSYGASFLQNQLKNS----KFSVLTHCNTGSLATAGYGTALGVIRALHSEGV---------LERAYCS--------ETRPFNQGSRLTAFELVHDRIPXXXXXXXXXXXLMKDG--RVSAVIVGADRVAANGDTTNKIGTYSLALCAK 425
            ++ +D+A N  +G  GA +L + L+      +F+VLT CNTGSLAT+GYGTALGVIR+L  + +         L+   C         ETRP+NQGSRLTA+ELV+D+IP            ++     + A  VGADR+  NGDT NKIGT  LA+  K
Sbjct:  143 LIDEDLANNMKMGDNGAKYLIDVLQKDGFKDEFAVLTICNTGSLATSGYGTALGVIRSLWKDSLAKTDKADSGLDNEKCPRMGHVFPLETRPYNQGSRLTAYELVYDKIPSTLITDSSIAYRIRTSPIPIKAAFVGADRIVRNGDTANKIGTLQLAVICK 302          
BLAST of CX289212 vs. ExPASy Swiss-Prot
Match: MTNA_SYNSC (Methylthioribose-1-phosphate isomerase OS=Synechococcus sp. (strain CC9605) GN=mtnA PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 6.955e-26
Identity = 64/143 (44.76%), Postives = 86/143 (60.14%), Query Frame = 3
Query:    3 AAEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPXXXXXXXXXXXLMKDGRVSAVIVGADRVAANGDTTNKIGTYSLALCAKFH 431
            AA  + ++D    + +  +G S L    +     VL HC+TG++AT G GTALGVI A H+ G+L  A+  ETRP  QG+ L+A+EL    +P           LM+ G V AV+VG DRV+ANGD  NKIGTY+LAL A+ H
Sbjct:  112 AAAALQREDCVLTQRLVDHGVSLLAQGCR-----VLHHCHTGAIATGGVGTALGVIAAAHARGLLRHAWLDETRPRLQGAALSAWELGCLGVPCTVIVDGASGLLMRRGEVDAVMVGCDRVSANGDVANKIGTYNLALVARAH 249          
BLAST of CX289212 vs. ExPASy Swiss-Prot
Match: MTNA_PSEPG (Methylthioribose-1-phosphate isomerase OS=Pseudomonas putida (strain GB-1) GN=mtnA PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 6.955e-26
Identity = 62/137 (45.26%), Postives = 87/137 (63.50%), Query Frame = 3
Query:   21 KDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPXXXXXXXXXXXLMKDGRVSAVIVGADRVAANGDTTNKIGTYSLALCAKFH 431
            + D   N  +   G   ++    N++ ++LT+ N G+LA+ G+GTALGVIRA + EG++ER Y  ETRP+ QGSRLTA+EL ++ IP           LMK   ++ V+VGAD +AANGD  +KIGTY LA+ A  H
Sbjct:  135 ESDREANLTMSQQGIELIRRHQGNAQ-ALLTYGNAGALASGGFGTALGVIRAGYLEGMVERVYAGETRPWLQGSRLTAWELANEGIPVTLCADSALAHLMKTKGITWVVVGADCIAANGDVASKIGTYQLAVSAMHH 270          
BLAST of CX289212 vs. ExPASy Swiss-Prot
Match: MTNA_PSEE4 (Methylthioribose-1-phosphate isomerase OS=Pseudomonas entomophila (strain L48) GN=mtnA PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 9.084e-26
Identity = 62/137 (45.26%), Postives = 85/137 (62.04%), Query Frame = 3
Query:   21 KDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPXXXXXXXXXXXLMKDGRVSAVIVGADRVAANGDTTNKIGTYSLALCAKFH 431
            + D   N  +  +G   ++   + S+ ++LTH N G+LAT G+GTALGVIRA   EG++E+ Y  E+RP+ QGSRLTA+EL  D +P           LMK   +S V+VGAD +AANGD   KIGTY +A+ A  H
Sbjct:  135 ESDREANLTMAQFGVEQIRKH-QGSEQALLTHGNAGALATGGFGTALGVIRAATLEGMVEQVYVCESRPWLQGSRLTAWELAADGVPVTVVADAAAGHLMKTKGISWVVVGADCIAANGDVAAKIGTYQIAVAAMHH 270          
BLAST of CX289212 vs. ExPASy Swiss-Prot
Match: EI2B1_METJA (Putative translation initiation factor eIF-2B subunit 1 OS=Methanocaldococcus jannaschii GN=MJ0454 PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 9.084e-26
Identity = 62/137 (45.26%), Postives = 83/137 (60.58%), Query Frame = 3
Query:   21 KDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPXXXXXXXXXXXLMKDGRVSAVIVGADRVAANGDTTNKIGTYSLALCAKFH 431
            ++D+ T K IG  G   +++       ++LTHCN G+LAT+ YGTAL VIR     G   R    ETRP  QG++LTAFEL ++ IP           LM+ G +  +IVGADR+ A+G   NKIGTYSLA+ AK+H
Sbjct:  116 EEDIETCKKIGMIGEKLIEDG-----DTILTHCNAGALATSAYGTALSVIRFAFYNGKKIRVIADETRPRLQGAKLTAFELNYEGIPVKVITDNTAGFLMQKGEIDKIIVGADRILADGTVYNKIGTYSLAVLAKYH 247          
BLAST of CX289212 vs. ExPASy Swiss-Prot
Match: MTNA_MOOTA (Methylthioribose-1-phosphate isomerase OS=Moorella thermoacetica (strain ATCC 39073) GN=mtnA PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.186e-25
Identity = 65/136 (47.79%), Postives = 82/136 (60.29%), Query Frame = 3
Query:   24 DDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPXXXXXXXXXXXLMKDGRVSAVIVGADRVAANGDTTNKIGTYSLALCAKFH 431
            +D A  +AIG +GAS L +       +VLTHCN G+LATA YGTAL  I  L + G + + +  ETRP  QG+RLT +EL    IP           +M  G V AVIVGADR+ ANGD  NKIGTY +A+ A+ H
Sbjct:  133 EDEAMCRAIGEHGASLLADAE-----AVLTHCNAGTLATARYGTALAPIYTLAARGKVLKVFADETRPLLQGARLTTWELHQAGIPVTLITDNMAATVMARGWVQAVIVGADRITANGDVANKIGTYGVAILAREH 263          
BLAST of CX289212 vs. ExPASy Swiss-Prot
Match: MTNA_SYMTH (Methylthioribose-1-phosphate isomerase OS=Symbiobacterium thermophilum GN=mtnA PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.550e-25
Identity = 63/142 (44.37%), Postives = 82/142 (57.75%), Query Frame = 3
Query:    6 AEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPXXXXXXXXXXXLMKDGRVSAVIVGADRVAANGDTTNKIGTYSLALCAKFH 431
            AE + ++D   N+ IG Y  S L+  +      +LTHCN G+LATA YGTAL  I      G   R +  ETRP  QG+RLTA+EL+   +            +MK+G V AV VG DRVAANGDT NKIGT  +A+ A+ +
Sbjct:  129 AEAIREEDARANRTIGEYALSLLKPGM-----GILTHCNAGALATAAYGTALAPIYLGQERGYNFRVFADETRPLLQGARLTAYELMQAGVDVTLICDNMASAVMKNGWVDAVFVGCDRVAANGDTANKIGTSGVAILARHY 265          
BLAST of CX289212 vs. ExPASy Swiss-Prot
Match: MTNA_PSEP1 (Methylthioribose-1-phosphate isomerase OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=mtnA PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.550e-25
Identity = 62/137 (45.26%), Postives = 86/137 (62.77%), Query Frame = 3
Query:   21 KDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPXXXXXXXXXXXLMKDGRVSAVIVGADRVAANGDTTNKIGTYSLALCAKFH 431
            + D   N  +   G   ++    N++ ++LT  N G+LA+ G+GTALGVIRA + EG++ER Y  ETRP+ QGSRLTA+EL ++ IP           LMK   ++ V+VGAD +AANGD  +KIGTY LA+ A  H
Sbjct:  135 ESDREANLTMAQQGIELIRRHQGNAQ-ALLTFGNAGALASGGFGTALGVIRAGYLEGMVERVYAGETRPWLQGSRLTAWELANEGIPVTLCADSALAHLMKTKGITWVVVGADCIAANGDVASKIGTYQLAVSAMHH 270          
BLAST of CX289212 vs. ExPASy Swiss-Prot
Match: MTNA_THET2 (Methylthioribose-1-phosphate isomerase OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=mtnA PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 2.024e-25
Identity = 63/132 (47.73%), Postives = 76/132 (57.58%), Query Frame = 3
Query:   36 TNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPXXXXXXXXXXXLMKDGRVSAVIVGADRVAANGDTTNKIGTYSLALCAKFH 431
            T  AI  +GA  L  Q       VLTHCNTG LAT GYGTALG I   +  G +   +  ETRP+ QG+RLTA+EL    +P           LM  G V AV+VG DR+A NGD  NK+GTY+LA+ A  H
Sbjct:  120 TEAAISRHGAQILWGQ-------VLTHCNTGPLATGGYGTALGAIVEAYRLGRVRHVWVDETRPYLQGARLTAYELQKAGVPATLITDSMAGWLMARGAVDAVVVGVDRMALNGDFANKVGTYALAVLAHHH 244          
The following BLAST results are available for this feature:
BLAST of CX289212 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 211
Match NameE-valueIdentityDescription
MTNA1_PETMO3.122e-2645.71Methylthioribose-1-phosphate isomerase 1 OS=Petrot... [more]
MTNA_YEAST6.955e-2643.13Methylthioribose-1-phosphate isomerase OS=Saccharo... [more]
MTNA_SYNSC6.955e-2644.76Methylthioribose-1-phosphate isomerase OS=Synechoc... [more]
MTNA_PSEPG6.955e-2645.26Methylthioribose-1-phosphate isomerase OS=Pseudomo... [more]
MTNA_PSEE49.084e-2645.26Methylthioribose-1-phosphate isomerase OS=Pseudomo... [more]
EI2B1_METJA9.084e-2645.26Putative translation initiation factor eIF-2B subu... [more]
MTNA_MOOTA1.186e-2547.79Methylthioribose-1-phosphate isomerase OS=Moorella... [more]
MTNA_SYMTH1.550e-2544.37Methylthioribose-1-phosphate isomerase OS=Symbioba... [more]
MTNA_PSEP11.550e-2545.26Methylthioribose-1-phosphate isomerase OS=Pseudomo... [more]
MTNA_THET22.024e-2547.73Methylthioribose-1-phosphate isomerase OS=Thermus ... [more]

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Properties
Property NameValue
Genbank descriptionC02010E01SK IF1 Citrus clementina cDNA clone C02010E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289212 ID=CX289212; Name=CX289212; organism=Citrus clementina; type=EST; length=434bp
AAGCTGCTGAAATTATGCTCAAAGATGATGTTGCTACAAACAAAGCTATT
GGTTCTTATGGGGCAAGTTTTCTTCAGAACCAGCTCAAAAATTCTAAATT
CTCTGTTCTTACTCATTGCAACACTGGCAGTCTTGCAACAGCTGGATATG
GTACCGCCCTTGGTGTGATCCGTGCACTTCATTCTGAGGGAGTGTTAGAA
AGAGCTTATTGCTCTGAAACACGTCCATTCAACCAAGGATCTAGACTCAC
TGCTTTTGAGTTGGTACATGATCGCATACCAGCTACTCTTATAGCCGACT
CTGCTGCGGCTGCATTGATGAAAGATGGTCGTGTGAGTGCTGTCATTGTC
GGAGCAGATCGAGTGGCTGCAAATGGTGACACTACTAACAAGATTGGAAC
CTACAGCCTTGCATTATGTGCAAAGTTTCATAAT
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