CX289212

Overview
NameCX289212
Unique NameCX289212
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length434
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289212 vs. ExPASy Swiss-Prot
Match: MTNA_PSEPK (Methylthioribose-1-phosphate isomerase OS=Pseudomonas putida (strain KT2440) GN=mtnA PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 1.004e-24
Identity = 61/135 (45.19%), Postives = 83/135 (61.48%), Query Frame = 3
Query:   27 DVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPXXXXXXXXXXXLMKDGRVSAVIVGADRVAANGDTTNKIGTYSLALCAKFH 431
            D   N  +   G   ++    N++ ++LT  N G+LA+ G+GTALGVIRA + EG++ER Y  ETRP+ QGSRLT +EL ++ IP           LMK   ++ V+VGAD +AANGD   KIGTY LA+ A  H
Sbjct:  137 DREANLTMAQQGIELIRRHQGNAQ-ALLTFGNAGALASGGFGTALGVIRAGYLEGMVERVYAGETRPWLQGSRLTGWELANEGIPVTLCADSALAHLMKTKGITWVVVGADCIAANGDMAGKIGTYQLAVSAMHH 270          
BLAST of CX289212 vs. ExPASy Swiss-Prot
Match: MTNA_METC4 (Methylthioribose-1-phosphate isomerase OS=Methylobacterium chloromethanicum (strain CM4 / NCIMB 13688) GN=mtnA PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 1.312e-24
Identity = 64/141 (45.39%), Postives = 79/141 (56.03%), Query Frame = 3
Query:    6 AEIMLKDDVATNKAIGSYGASFLQN--QLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPXXXXXXXXXXXLMKDGRVSAVIVGADRVAANGDTTNKIGTYSLALCA 422
            A  +  +DVA+ +AIG +GA  L      K+   +VLTHCN G LAT  +GTAL  I   H  GV    +  ETRP NQG+ LTAFEL    +P           LM+ G+V   IVG+DR  A+GD  NKIGTY  AL A
Sbjct:  123 AAAIADEDVASCRAIGEHGAKILSEIAAKKDGPVNVLTHCNAGWLATVDWGTALAPIYVAHDAGVPVHVFVDETRPRNQGAALTAFELNAHGVPHTVIADNAGGHLMQHGQVDVCIVGSDRTTASGDVCNKIGTYLKALAA 263          
BLAST of CX289212 vs. ExPASy Swiss-Prot
Match: MTNA_METSB (Methylthioribose-1-phosphate isomerase OS=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) GN=mtnA PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 1.713e-24
Identity = 61/147 (41.50%), Postives = 82/147 (55.78%), Query Frame = 3
Query:    6 AEIMLKDDVATNKAIGSYGASFLQN----QLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPXXXXXXXXXXXLMKDGRVSAVIVGADRVAANGDTTNKIGTYSLALCAKFHN 434
            A ++ +DD+A  +AIG +G S ++     +   +  +VLTHCN G LAT  +GTA   +   H  G+    Y  ETRP NQG+ LTAFEL    +P           LM+ G +  VIVG DR  A+GD  NKIGTY  AL A+ +N
Sbjct:  123 AGVIARDDIALCEAIGMHGLSLIKTIAAGKPPGAPVNVLTHCNAGWLATVDWGTATAPVYKAHDAGLAVHVYVDETRPRNQGAALTAFELGQHGVPHTVIVDNAGGHLMQHGGIDMVIVGTDRTTASGDVCNKIGTYLKALAARDNN 269          
BLAST of CX289212 vs. ExPASy Swiss-Prot
Match: EI2B1_ARCFU (Putative translation initiation factor eIF-2B subunit 1 OS=Archaeoglobus fulgidus GN=AF_0370 PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 1.713e-24
Identity = 63/143 (44.06%), Postives = 85/143 (59.44%), Query Frame = 3
Query:    6 AEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPXXXXXXXXXXXLMKDGRVSAVIVGADRVAANGDTTNKIGTYSLALCAKFHN 434
            AE + ++DV  N+ +G YGA  L++        VLT+CN G LAT  +GTALGV+R+   +G   R    ETRP NQGSRLT +EL+ D I            +M+ G V  VIVGADR+  +    NKIGTY++++ AK HN
Sbjct:  120 AEKLAEEDVERNRKMGEYGAELLEDG-----DVVLTYCNAGRLATVDWGTALGVVRSAVEQGKEIRVIACETRPLNQGSRLTCWELMEDGIDVTLITDSMVGIVMQKGMVDKVIVGADRIVRDA-VFNKIGTYTVSVVAKHHN 256          
BLAST of CX289212 vs. ExPASy Swiss-Prot
Match: MTNA_METNO (Methylthioribose-1-phosphate isomerase OS=Methylobacterium nodulans (strain ORS2060 / LMG 21967) GN=mtnA PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 3.817e-24
Identity = 62/135 (45.93%), Postives = 76/135 (56.30%), Query Frame = 3
Query:   21 KDDVATNKAIGSYGASFL-QNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPXXXXXXXXXXXLMKDGRVSAVIVGADRVAANGDTTNKIGTYSLALCA 422
            ++DVA  +AIG +GA  + Q   K  + +VLTHCN G LAT  +GTAL  I   H  GV    +  ETRP NQG+ LTAFEL    +P           LM+ G V   IVG+DR  + GD  NKIGTY  AL A
Sbjct:  128 EEDVANCRAIGEHGARLIAQTAAKGRRVNVLTHCNAGWLATVDWGTALAPIYVAHDAGVPVHVFVDETRPRNQGAALTAFELNAHGVPHTVVADNAGGHLMQHGGVDLCIVGSDRTTSTGDVCNKIGTYLKALAA 262          
BLAST of CX289212 vs. ExPASy Swiss-Prot
Match: EI2B1_METTH (Putative translation initiation factor eIF-2B subunit 1 OS=Methanobacterium thermoautotrophicum GN=MTH_1872 PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 3.817e-24
Identity = 61/140 (43.57%), Postives = 82/140 (58.57%), Query Frame = 3
Query:   15 MLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPXXXXXXXXXXXLMKDGRVSAVIVGADRVAANGDTTNKIGTYSLALCAKFHN 434
            M  +D+ TN+AIG +GA  +++       +VLTHCN G+LA   YGTALGVIRA   +G      C ETRP  QG+RL+ +E+  + IP           LM+ G +  VI+GADR+ A G   NKIG+  +AL AK  N
Sbjct:  106 MYMEDMETNRAIGRHGAGLIEDG-----DTVLTHCNAGALACVDYGTALGVIRAAWDDGKRLTVICDETRPVGQGARLSVWEMQQEGIPVKLITDVAAGYLMQTGMIDKVIIGADRI-AEGGVANKIGSLMVALAAKRFN 239          
BLAST of CX289212 vs. ExPASy Swiss-Prot
Match: MTNA_METPB (Methylthioribose-1-phosphate isomerase OS=Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) GN=mtnA PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 6.510e-24
Identity = 64/141 (45.39%), Postives = 78/141 (55.32%), Query Frame = 3
Query:    6 AEIMLKDDVATNKAIGSYGASFLQNQL--KNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPXXXXXXXXXXXLMKDGRVSAVIVGADRVAANGDTTNKIGTYSLALCA 422
            A  + ++DVA+ +AIG +GA  L      K    +VLTHCN G LAT  +GTAL  I   H  GV    +  ETRP NQG+ LTAFEL    +P           LM+ G+V   IVG+DR  A GD  NKIGTY  AL A
Sbjct:  123 AASIAEEDVASCRAIGEHGARILAEIAVKKGGPVNVLTHCNAGWLATVDWGTALAPIYVAHDAGVPVHVFVDETRPRNQGAALTAFELNAHGVPHTVIADNAGGHLMQHGQVDVCIVGSDRTTAAGDVCNKIGTYLKALAA 263          
BLAST of CX289212 vs. ExPASy Swiss-Prot
Match: MTNA_MAGSA (Methylthioribose-1-phosphate isomerase OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=mtnA PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 3.231e-23
Identity = 64/146 (43.84%), Postives = 80/146 (54.79%), Query Frame = 3
Query:    3 AAEIMLKDDVATNKAIGSYGASFL--QNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPXXXXXXXXXXXLMKDGRVSAVIVGADRVAANGDTTNKIGTYSLALCAKFHN 434
            AAEI   +D A N A+G +GA+ +   ++ KN   ++LTHCN G LAT  +GTAL  I      G+    +  ETRP NQG+ LTA EL    +P           LM+ G V   IVG DR   NGD  NKIGTY  AL AK +N
Sbjct:  123 AAEIC-DEDSAQNAALGEHGAAIIAAHHKAKNRTINILTHCNAGWLATVDWGTALAPIYKAFDAGIPLHVWVDETRPRNQGASLTARELNWHGVPHTVIADNTGGHLMQHGMVDLCIVGTDRTTRNGDVCNKIGTYLKALAAKDNN 267          
BLAST of CX289212 vs. ExPASy Swiss-Prot
Match: MTNA_CLOPH (Methylthioribose-1-phosphate isomerase OS=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) GN=mtnA PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 3.231e-23
Identity = 60/137 (43.80%), Postives = 79/137 (57.66%), Query Frame = 3
Query:   21 KDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPXXXXXXXXXXXLMKDGRVSAVIVGADRVAANGDTTNKIGTYSLALCAKFH 431
            ++D+   KAI  YG  FL++        +LTHCN G LAT+ YGTALG +      G+  + +  ETRP  QG+RLTAFEL    I            +MK+G ++A  VG DRVA NGDT NKIGT  +A+ AK +
Sbjct:  130 EEDIKICKAISEYGLEFLKDG-----DGILTHCNAGPLATSQYGTALGPLILGKERGMNFKVFADETRPLLQGARLTAFELHEAGIDVTLICDNMASIVMKNGFINACFVGCDRVAENGDTANKIGTSGVAILAKHY 261          
BLAST of CX289212 vs. ExPASy Swiss-Prot
Match: MTNA_OCHA4 (Methylthioribose-1-phosphate isomerase OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=mtnA PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 7.198e-23
Identity = 63/145 (43.45%), Postives = 78/145 (53.79%), Query Frame = 3
Query:    3 AAEIMLKDDVATNKAIGSYGASFLQNQLKNSK----FSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPXXXXXXXXXXXLMKDGRVSAVIVGADRVAANGDTTNKIGTYSLALCAK 425
            AAEI  ++DV  N+AIG+ G   ++      K      +LTHCN G LAT  YGTA   I     EG+    Y  ETRP NQG+ LTA+E+    +P           LM+ G +  VIVG DR  ANGD  NKIGTY  AL A+
Sbjct:  123 AAEIA-EEDVELNRAIGANGLDVIREIASKKKPGEPVRILTHCNAGWLATVDYGTATAPIYMAVEEGIPVHVYVDETRPRNQGAYLTAWEMNGHGVPHTLIVDNAGGHLMQHGDIDMVIVGTDRTTANGDVCNKIGTYLKALAAR 266          
The following BLAST results are available for this feature:
BLAST of CX289212 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 211
Match NameE-valueIdentityDescription
MTNA_PSEPK1.004e-2445.19Methylthioribose-1-phosphate isomerase OS=Pseudomo... [more]
MTNA_METC41.312e-2445.39Methylthioribose-1-phosphate isomerase OS=Methylob... [more]
MTNA_METSB1.713e-2441.50Methylthioribose-1-phosphate isomerase OS=Methyloc... [more]
EI2B1_ARCFU1.713e-2444.06Putative translation initiation factor eIF-2B subu... [more]
MTNA_METNO3.817e-2445.93Methylthioribose-1-phosphate isomerase OS=Methylob... [more]
EI2B1_METTH3.817e-2443.57Putative translation initiation factor eIF-2B subu... [more]
MTNA_METPB6.510e-2445.39Methylthioribose-1-phosphate isomerase OS=Methylob... [more]
MTNA_MAGSA3.231e-2343.84Methylthioribose-1-phosphate isomerase OS=Magnetos... [more]
MTNA_CLOPH3.231e-2343.80Methylthioribose-1-phosphate isomerase OS=Clostrid... [more]
MTNA_OCHA47.198e-2343.45Methylthioribose-1-phosphate isomerase OS=Ochrobac... [more]

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Properties
Property NameValue
Genbank descriptionC02010E01SK IF1 Citrus clementina cDNA clone C02010E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289212 ID=CX289212; Name=CX289212; organism=Citrus clementina; type=EST; length=434bp
AAGCTGCTGAAATTATGCTCAAAGATGATGTTGCTACAAACAAAGCTATT
GGTTCTTATGGGGCAAGTTTTCTTCAGAACCAGCTCAAAAATTCTAAATT
CTCTGTTCTTACTCATTGCAACACTGGCAGTCTTGCAACAGCTGGATATG
GTACCGCCCTTGGTGTGATCCGTGCACTTCATTCTGAGGGAGTGTTAGAA
AGAGCTTATTGCTCTGAAACACGTCCATTCAACCAAGGATCTAGACTCAC
TGCTTTTGAGTTGGTACATGATCGCATACCAGCTACTCTTATAGCCGACT
CTGCTGCGGCTGCATTGATGAAAGATGGTCGTGTGAGTGCTGTCATTGTC
GGAGCAGATCGAGTGGCTGCAAATGGTGACACTACTAACAAGATTGGAAC
CTACAGCCTTGCATTATGTGCAAAGTTTCATAAT
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