CX289212

Overview
NameCX289212
Unique NameCX289212
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length434
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13859 contig Ccv1_Contig13859:764..1197. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX289212 vs. ExPASy Swiss-Prot
Match: MTNA_DESRM (Methylthioribose-1-phosphate isomerase OS=Desulfotomaculum reducens (strain MI-1) GN=mtnA PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 1.447e-31
Identity = 67/143 (46.85%), Postives = 87/143 (60.84%), Query Frame = 3
Query:    6 AEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPXXXXXXXXXXXLMKDGRVSAVIVGADRVAANGDTTNKIGTYSLALCAKFHN 434
            A  +  +DV +N+ +G YG   L  + +     VLTHCN G+LATAGYGTALGV+RA H +G     Y  ETRP  QG+RLT++E+V + IP           LM    V  ++VGADR+ ANGD  NKIGTY +A+ A  HN
Sbjct:  123 AHAIYNEDVESNRKMGEYGQELLPEEAR-----VLTHCNAGALATAGYGTALGVVRAAHEKGKKVHVYADETRPLLQGARLTSWEMVQEGIPVTLITDNMAGYLMSKKMVDCIVVGADRITANGDVANKIGTYGVAVLANHHN 260          
BLAST of CX289212 vs. ExPASy Swiss-Prot
Match: MTNA_ACIBL (Methylthioribose-1-phosphate isomerase OS=Acidobacteria bacterium (strain Ellin345) GN=mtnA PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 1.447e-31
Identity = 71/136 (52.21%), Postives = 90/136 (66.18%), Query Frame = 3
Query:   24 DDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPXXXXXXXXXXXLMKDGRVSAVIVGADRVAANGDTTNKIGTYSLALCAKFH 431
            +D+A N+A+G  GA  +      S+  VLTHCN G+LATAGYGTALGVIRA    G   R +  ETRPF QG+RLTA+EL+ D I            +M  G++ AV+VGADR+AANGD  NKIGTY++A+ AK H
Sbjct:  134 EDIAANQAMGRNGAVLMP-----SEGGVLTHCNAGALATAGYGTALGVIRAAVESGKNIRVFADETRPFLQGARLTAWELMKDGIDTTVISDNMAGAMMAQGKIQAVVVGADRIAANGDVANKIGTYTVAVLAKEH 264          
BLAST of CX289212 vs. ExPASy Swiss-Prot
Match: MTNA_PELCD (Methylthioribose-1-phosphate isomerase OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=mtnA PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 1.890e-31
Identity = 73/142 (51.41%), Postives = 88/142 (61.97%), Query Frame = 3
Query:    6 AEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPXXXXXXXXXXXLMKDGRVSAVIVGADRVAANGDTTNKIGTYSLALCAKFH 431
            A+ +   D A N+A+G +GA  + +  +     VLTHCN G+LAT GYGTALGVIRA    G        ETRPF QGSRLTA+EL  D IP           LM+ G +  VIVGADR+AANGD  NKIGTYS+A+ AK H
Sbjct:  125 AQAIAAQDDAINRAMGRHGAELIADNAR-----VLTHCNAGALATGGYGTALGVIRAAVESGKKISVLADETRPFLQGSRLTAWELHKDGIPVTLICDNMAGALMRQGEIDCVIVGADRIAANGDVANKIGTYSVAVLAKEH 261          
BLAST of CX289212 vs. ExPASy Swiss-Prot
Match: MTNA_GEOSM (Methylthioribose-1-phosphate isomerase OS=Geobacter sp. (strain M21) GN=mtnA PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 1.890e-31
Identity = 70/134 (52.24%), Postives = 89/134 (66.42%), Query Frame = 3
Query:   24 DDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPXXXXXXXXXXXLMKDGRVSAVIVGADRVAANGDTTNKIGTYSLALCAK 425
            +D+A  K IG +GA+ ++        S+LTHCN G LATAGYGTALGVIR  H  G   R +  ETRP+ QG+RLTA+EL+ D IP           LM+ G++   +VGADR+AANGDT NKIGTYS+A+ AK
Sbjct:  131 EDLAICKEIGRHGAALVKEGA-----SILTHCNAGGLATAGYGTALGVIRGAHEAGKGIRVFADETRPWLQGARLTAWELMKDSIPVTLISDNMAGWLMRTGQIDFCVVGADRIAANGDTANKIGTYSVAVLAK 259          
BLAST of CX289212 vs. ExPASy Swiss-Prot
Match: MTNA_CYAA5 (Methylthioribose-1-phosphate isomerase OS=Cyanothece sp. (strain ATCC 51142) GN=mtnA PE=3 SV=2)

HSP 1 Score: 134.42 bits (337), Expect = 1.890e-31
Identity = 70/142 (49.30%), Postives = 94/142 (66.20%), Query Frame = 3
Query:    6 AEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPXXXXXXXXXXXLMKDGRVSAVIVGADRVAANGDTTNKIGTYSLALCAKFH 431
            A+ + ++D+ T +AIG    S L    +  K ++LTHCN G+LATAGYGTALGVIR++ + G L R +  ETRP  QG++LTA+E V ++IP            M+ G +  V+VGADR+AANGDT NKIGTY LA+ AK H
Sbjct:  125 AQKIQEEDLQTCQAIGHNSLSILPTNPE--KLTILTHCNAGALATAGYGTALGVIRSVWTAGRLNRVFADETRPRLQGAKLTAWECVQEKIPVTVISDNMAAHCMQKGLIDMVVVGADRIAANGDTANKIGTYGLAVIAKMH 264          
BLAST of CX289212 vs. ExPASy Swiss-Prot
Match: MTNA_MAGSM (Methylthioribose-1-phosphate isomerase OS=Magnetococcus sp. (strain MC-1) GN=mtnA PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 2.468e-31
Identity = 72/145 (49.66%), Postives = 100/145 (68.97%), Query Frame = 3
Query:    6 AEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHS--EGVLERAYCSETRPFNQGSRLTAFELVHDRIPXXXXXXXXXXXLMKDGRVSAVIVGADRVAANGDTTNKIGTYSLALCAKFHN 434
            A  + ++D+A+ +A+G++GA+ L    +     ++THCN G+LATAGYGTALGVIRA H+  +G L R   +ETRP+ QG+RLTA+EL+ D I            LM +G V AV+VG+DRVAANGD  NKIGTY+LA+ A+ H+
Sbjct:  126 AHAIREEDIASCRAMGAHGAALLPTNSQRPTV-IMTHCNAGALATAGYGTALGVIRAAHTAQQGNL-RVIANETRPYLQGARLTAWELLQDHIDTTLITDNMAGWLMANGEVDAVVVGSDRVAANGDVANKIGTYTLAVLARRHD 268          
BLAST of CX289212 vs. ExPASy Swiss-Prot
Match: MTNA_LEPBP (Methylthioribose-1-phosphate isomerase OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / ATCC 23582 / Paris) GN=mtnA PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 2.468e-31
Identity = 71/140 (50.71%), Postives = 92/140 (65.71%), Query Frame = 3
Query:   15 MLKDDVATNKAIGSYGAS-FLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPXXXXXXXXXXXLMKDGRVSAVIVGADRVAANGDTTNKIGTYSLALCAKFH 431
            M+  D+  N+ +G  GA  F +NQ   ++F ++THCNTG+LATAG+GTALGVIR+L  +G     Y  ETRPF QGSRLTAFE++ + I            LM   ++ AV+VG DRVA NGDT NKIGTY+LA+ A  H
Sbjct:  126 MMVQDLKANQTLGKNGADLFPKNQ---NEFHIITHCNTGALATAGHGTALGVIRSLRDQGKKVVVYADETRPFLQGSRLTAFEMMEEGIECYIITDGMSGWLMNHRKIDAVLVGCDRVATNGDTANKIGTYNLAIVAYEH 262          
BLAST of CX289212 vs. ExPASy Swiss-Prot
Match: MTNA_LEPBA (Methylthioribose-1-phosphate isomerase OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / Ames) GN=mtnA PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 2.468e-31
Identity = 71/140 (50.71%), Postives = 92/140 (65.71%), Query Frame = 3
Query:   15 MLKDDVATNKAIGSYGAS-FLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPXXXXXXXXXXXLMKDGRVSAVIVGADRVAANGDTTNKIGTYSLALCAKFH 431
            M+  D+  N+ +G  GA  F +NQ   ++F ++THCNTG+LATAG+GTALGVIR+L  +G     Y  ETRPF QGSRLTAFE++ + I            LM   ++ AV+VG DRVA NGDT NKIGTY+LA+ A  H
Sbjct:  126 MMVQDLKANQTLGKNGADLFPKNQ---NEFHIITHCNTGALATAGHGTALGVIRSLRDQGKKVVVYADETRPFLQGSRLTAFEMMEEGIECYIITDGMSGWLMNHRKIDAVLVGCDRVATNGDTANKIGTYNLAIVAYEH 262          
BLAST of CX289212 vs. ExPASy Swiss-Prot
Match: MTNA_GEOSF (Methylthioribose-1-phosphate isomerase OS=Geobacter sp. (strain FRC-32) GN=mtnA PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 2.468e-31
Identity = 70/135 (51.85%), Postives = 90/135 (66.67%), Query Frame = 3
Query:   21 KDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPXXXXXXXXXXXLMKDGRVSAVIVGADRVAANGDTTNKIGTYSLALCAK 425
            ++D+   +AIG +GA  ++        +VLTHCN G LATAGYGTALGVIRA H  G   + +  ETRP+ QG+RLTA+EL+ D IP            MK G ++A +VGADR+AANGDT NKIGTYS+A+ AK
Sbjct:  130 EEDLEICRAIGRHGAPLIREGA-----TVLTHCNAGGLATAGYGTALGVIRAAHEAGKNIQVFADETRPWLQGARLTAWELMKDGIPVTLIADNMAGYFMKKGAITACVVGADRIAANGDTANKIGTYSVAVLAK 259          
BLAST of CX289212 vs. ExPASy Swiss-Prot
Match: MTNA_DESVM (Methylthioribose-1-phosphate isomerase OS=Desulfovibrio vulgaris (strain Miyazaki F / DSM 19637) GN=mtnA PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 2.468e-31
Identity = 70/137 (51.09%), Postives = 89/137 (64.96%), Query Frame = 3
Query:   21 KDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPXXXXXXXXXXXLMKDGRVSAVIVGADRVAANGDTTNKIGTYSLALCAKFH 431
            +DD+  N+A+G +GA+ +     +   +V+THCN G+LATAGYGTALGVIR     G       +ETRPF QG+RLTA+EL  D IP           LM+ G V  V+VGADR+AANGD  NKIGTYS+AL A+ H
Sbjct:  130 RDDIEINRAMGRHGAALI-----DEGDTVMTHCNAGALATAGYGTALGVIRGAVDAGKKISVIANETRPFLQGARLTAYELHEDHIPVTVACDNACGHLMRKGMVQKVVVGADRIAANGDAANKIGTYSVALLAREH 261          
The following BLAST results are available for this feature:
BLAST of CX289212 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 211
Match NameE-valueIdentityDescription
MTNA_DESRM1.447e-3146.85Methylthioribose-1-phosphate isomerase OS=Desulfot... [more]
MTNA_ACIBL1.447e-3152.21Methylthioribose-1-phosphate isomerase OS=Acidobac... [more]
MTNA_PELCD1.890e-3151.41Methylthioribose-1-phosphate isomerase OS=Pelobact... [more]
MTNA_GEOSM1.890e-3152.24Methylthioribose-1-phosphate isomerase OS=Geobacte... [more]
MTNA_CYAA51.890e-3149.30Methylthioribose-1-phosphate isomerase OS=Cyanothe... [more]
MTNA_MAGSM2.468e-3149.66Methylthioribose-1-phosphate isomerase OS=Magnetoc... [more]
MTNA_LEPBP2.468e-3150.71Methylthioribose-1-phosphate isomerase OS=Leptospi... [more]
MTNA_LEPBA2.468e-3150.71Methylthioribose-1-phosphate isomerase OS=Leptospi... [more]
MTNA_GEOSF2.468e-3151.85Methylthioribose-1-phosphate isomerase OS=Geobacte... [more]
MTNA_DESVM2.468e-3151.09Methylthioribose-1-phosphate isomerase OS=Desulfov... [more]

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Properties
Property NameValue
Genbank descriptionC02010E01SK IF1 Citrus clementina cDNA clone C02010E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289212 ID=CX289212; Name=CX289212; organism=Citrus clementina; type=EST; length=434bp
AAGCTGCTGAAATTATGCTCAAAGATGATGTTGCTACAAACAAAGCTATT
GGTTCTTATGGGGCAAGTTTTCTTCAGAACCAGCTCAAAAATTCTAAATT
CTCTGTTCTTACTCATTGCAACACTGGCAGTCTTGCAACAGCTGGATATG
GTACCGCCCTTGGTGTGATCCGTGCACTTCATTCTGAGGGAGTGTTAGAA
AGAGCTTATTGCTCTGAAACACGTCCATTCAACCAAGGATCTAGACTCAC
TGCTTTTGAGTTGGTACATGATCGCATACCAGCTACTCTTATAGCCGACT
CTGCTGCGGCTGCATTGATGAAAGATGGTCGTGTGAGTGCTGTCATTGTC
GGAGCAGATCGAGTGGCTGCAAATGGTGACACTACTAACAAGATTGGAAC
CTACAGCCTTGCATTATGTGCAAAGTTTCATAAT
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