CX289212

Overview
NameCX289212
Unique NameCX289212
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length434
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13859 contig Ccv1_Contig13859:764..1197. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX289212 vs. ExPASy Swiss-Prot
Match: MTNA_PELTS (Methylthioribose-1-phosphate isomerase OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=mtnA PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 2.729e-30
Identity = 64/142 (45.07%), Postives = 88/142 (61.97%), Query Frame = 3
Query:    6 AEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPXXXXXXXXXXXLMKDGRVSAVIVGADRVAANGDTTNKIGTYSLALCAKFH 431
            A+ + ++D+  N+ +  YG   +    +     +LTHCN G+LATAGYGTALG++RA H  G     Y  ETRP  QG+RLTA+E++ + IP           L+  G+   V+VGADR+AANGD  NKIGTYSLA+ A+ H
Sbjct:  125 AQAIFREDITGNRRMARYGLELIPEGAR-----ILTHCNAGALATAGYGTALGLVRAAHEAGRRVSVYAGETRPLLQGARLTAWEMLQEGIPVTLITDSMAGYLLAKGKADLVVVGADRIAANGDVANKIGTYSLAVLAREH 261          
BLAST of CX289212 vs. ExPASy Swiss-Prot
Match: MTNA_PELPD (Methylthioribose-1-phosphate isomerase OS=Pelobacter propionicus (strain DSM 2379) GN=mtnA PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 2.729e-30
Identity = 68/138 (49.28%), Postives = 89/138 (64.49%), Query Frame = 3
Query:   21 KDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPXXXXXXXXXXXLMKDGRVSAVIVGADRVAANGDTTNKIGTYSLALCAKFHN 434
            ++D+   + IG +GA+ +         +VLTHCN G LATAGYGTALGVIRA H  G   + +  ETRP+ QG+RLTA+ELV + IP            M  G ++  +VGADR+AANGDT NKIGTYS+A+ AK +N
Sbjct:  130 EEDLTICRNIGKWGATLIPEGA-----TVLTHCNAGGLATAGYGTALGVIRAAHEAGKKIQVFADETRPWLQGARLTAWELVKEGIPATLISDNMAGFFMSRGEITCCVVGADRIAANGDTANKIGTYSVAVLAKENN 262          
BLAST of CX289212 vs. ExPASy Swiss-Prot
Match: MTNA_CHLTE (Methylthioribose-1-phosphate isomerase OS=Chlorobium tepidum GN=mtnA PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 2.729e-30
Identity = 68/140 (48.57%), Postives = 86/140 (61.43%), Query Frame = 3
Query:   24 DDVATNKAIGSYGASFLQNQ----LKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPXXXXXXXXXXXLMKDGRVSAVIVGADRVAANGDTTNKIGTYSLALCAKFH 431
            D++     I  +G   L+      LK  K +VLTHCNTG+LA  G GTALGVIR  + EG++ER   SE+RP  QG RLTA+EL HD IP           LM+ G +   I GADR+ ANGDT NKIGTY+ A+ A++H
Sbjct:  130 DEIDNCDKIARHGVELLKQDFADVLKTRKLNVLTHCNTGTLACCGIGTALGVIRLAYQEGLIERVITSESRPLLQGLRLTAWELEHDGIPFASISDSSSAILMQRGMIDFAITGADRITANGDTANKIGTYAHAISARYH 269          
BLAST of CX289212 vs. ExPASy Swiss-Prot
Match: MTNA_AQUAE (Methylthioribose-1-phosphate isomerase OS=Aquifex aeolicus GN=mtnA PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 2.729e-30
Identity = 71/138 (51.45%), Postives = 86/138 (62.32%), Query Frame = 3
Query:   21 KDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPXXXXXXXXXXXLMKDGRVSAVIVGADRVAANGDTTNKIGTYSLALCAKFHN 434
            K+D   NK +G  G+  +    K     VLTHCNTG+LATAG+GTALGVIR+ H  G     +  ETRP+ QG+RLTA+ELV + IP           LMK G V  VIVGADR+ A GD  NKIGTY+LA+  K HN
Sbjct:  243 KEDYEANKRMGEIGSEIVPLNAK-----VLTHCNTGALATAGWGTALGVIRSAHYGGKNIFVWVDETRPYLQGARLTAWELVKESIPHKIITDSTAGFLMKKGMVDLVIVGADRITAKGDVANKIGTYTLAVLCKEHN 375          
BLAST of CX289212 vs. ExPASy Swiss-Prot
Match: MTNA_XANOR (Methylthioribose-1-phosphate isomerase OS=Xanthomonas oryzae pv. oryzae GN=mtnA PE=3 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 3.564e-30
Identity = 70/142 (49.30%), Postives = 91/142 (64.08%), Query Frame = 3
Query:    6 AEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPXXXXXXXXXXXLMKDGRVSAVIVGADRVAANGDTTNKIGTYSLALCAKFH 431
            A+ +  +D+A N+ +G+ GA+ +          VLTHCNTGSLATAG+GTALGVIRA  ++  + + +  ETRP+ QG+RLT +EL  D I            LMK G V  VIVGADR+ ANGDT NKIGTY LA+ A+ H
Sbjct:  133 AQAIADEDLAANRHMGALGAALIA-----PGSGVLTHCNTGSLATAGFGTALGVIRAGMAQQRIAKVFAGETRPWLQGARLTVWELQQDGIDATLIADSAASHLMKSGLVQWVIVGADRICANGDTANKIGTYQLAIAARHH 269          
BLAST of CX289212 vs. ExPASy Swiss-Prot
Match: MTNA_XANOP (Methylthioribose-1-phosphate isomerase OS=Xanthomonas oryzae pv. oryzae (strain PXO99A) GN=mtnA PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 3.564e-30
Identity = 70/142 (49.30%), Postives = 91/142 (64.08%), Query Frame = 3
Query:    6 AEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPXXXXXXXXXXXLMKDGRVSAVIVGADRVAANGDTTNKIGTYSLALCAKFH 431
            A+ +  +D+A N+ +G+ GA+ +          VLTHCNTGSLATAG+GTALGVIRA  ++  + + +  ETRP+ QG+RLT +EL  D I            LMK G V  VIVGADR+ ANGDT NKIGTY LA+ A+ H
Sbjct:  133 AQAIADEDLAANRHMGALGAALIA-----PGSGVLTHCNTGSLATAGFGTALGVIRAGMAQQRIAKVFAGETRPWLQGARLTVWELQQDGIDATLIADSAASHLMKSGLVQWVIVGADRICANGDTANKIGTYQLAIAARHH 269          
BLAST of CX289212 vs. ExPASy Swiss-Prot
Match: MTNA_XANOM (Methylthioribose-1-phosphate isomerase OS=Xanthomonas oryzae pv. oryzae (strain MAFF 311018) GN=mtnA PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 3.564e-30
Identity = 70/142 (49.30%), Postives = 91/142 (64.08%), Query Frame = 3
Query:    6 AEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPXXXXXXXXXXXLMKDGRVSAVIVGADRVAANGDTTNKIGTYSLALCAKFH 431
            A+ +  +D+A N+ +G+ GA+ +          VLTHCNTGSLATAG+GTALGVIRA  ++  + + +  ETRP+ QG+RLT +EL  D I            LMK G V  VIVGADR+ ANGDT NKIGTY LA+ A+ H
Sbjct:  133 AQAIADEDLAANRHMGALGAALIA-----PGSGVLTHCNTGSLATAGFGTALGVIRAGMAQQRIAKVFAGETRPWLQGARLTVWELQQDGIDATLIADSAASHLMKSGLVQWVIVGADRICANGDTANKIGTYQLAIAARHH 269          
BLAST of CX289212 vs. ExPASy Swiss-Prot
Match: MTNA_XANC5 (Methylthioribose-1-phosphate isomerase OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) GN=mtnA PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 3.564e-30
Identity = 70/142 (49.30%), Postives = 91/142 (64.08%), Query Frame = 3
Query:    6 AEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPXXXXXXXXXXXLMKDGRVSAVIVGADRVAANGDTTNKIGTYSLALCAKFH 431
            A+ +  +D+A N+ +G+ GA+ +          VLTHCNTGSLATAG+GTALGVIRA  ++  + + +  ETRP+ QG+RLT +EL  D I            LMK G V  VIVGADR+ ANGDT NKIGTY LA+ A+ H
Sbjct:  133 AQAIADEDLAANRHMGALGAALIA-----PGSGVLTHCNTGSLATAGFGTALGVIRAGMAQQRIAKVFAGETRPWLQGARLTVWELQQDGIDATLIADSAASHLMKSGLVQWVIVGADRICANGDTANKIGTYQLAIAARHH 269          
BLAST of CX289212 vs. ExPASy Swiss-Prot
Match: MTNA_SYNY3 (Methylthioribose-1-phosphate isomerase OS=Synechocystis sp. (strain PCC 6803) GN=mtnA PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 3.564e-30
Identity = 72/143 (50.35%), Postives = 90/143 (62.94%), Query Frame = 3
Query:    3 AAEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPXXXXXXXXXXXLMKDGRVSAVIVGADRVAANGDTTNKIGTYSLALCAKFH 431
            A +I L DD+ T +AIG+ G   L  +    + ++LTHCN G+LATAGYGTA+GVIRA  S G L R Y  ETRP  QG++LT +E V   IP            M+  R+ AV+VGADR+A NGD  NKIGTY LA+ AK H
Sbjct:  131 AQQIQL-DDLRTCQAIGAAGLEVLPRE--PHQLTILTHCNAGALATAGYGTAIGVIRAAWSAGRLARVYADETRPRLQGAKLTVWECVQAGIPVTLITDNMAAHCMQQQRIDAVVVGADRIARNGDIANKIGTYGLAVLAKMH 270          
BLAST of CX289212 vs. ExPASy Swiss-Prot
Match: MTNA_SYNWW (Methylthioribose-1-phosphate isomerase OS=Syntrophomonas wolfei subsp. wolfei (strain Goettingen) GN=mtnA PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 3.564e-30
Identity = 70/142 (49.30%), Postives = 87/142 (61.27%), Query Frame = 3
Query:    6 AEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPXXXXXXXXXXXLMKDGRVSAVIVGADRVAANGDTTNKIGTYSLALCAKFH 431
            A+ + K+D+  N+AIG  G   L    +     V+T CN G+LAT GYGTALGVIR+      +E  +  ETRP  QGSRLT +EL  D+IP            M  G+V AVI GADR+A NGDT NKIGTYSLA+ AK+H
Sbjct:  123 AQNLYKEDIRVNEAIGEQGQELLGEGSR-----VMTICNAGALATCGYGTALGVIRSAARRNKIEMVWACETRPVLQGSRLTVWELWQDKIPVTLLTDNMAGYTMSLGKVDAVITGADRIATNGDTANKIGTYSLAVLAKYH 259          
The following BLAST results are available for this feature:
BLAST of CX289212 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 211
Match NameE-valueIdentityDescription
MTNA_PELTS2.729e-3045.07Methylthioribose-1-phosphate isomerase OS=Pelotoma... [more]
MTNA_PELPD2.729e-3049.28Methylthioribose-1-phosphate isomerase OS=Pelobact... [more]
MTNA_CHLTE2.729e-3048.57Methylthioribose-1-phosphate isomerase OS=Chlorobi... [more]
MTNA_AQUAE2.729e-3051.45Methylthioribose-1-phosphate isomerase OS=Aquifex ... [more]
MTNA_XANOR3.564e-3049.30Methylthioribose-1-phosphate isomerase OS=Xanthomo... [more]
MTNA_XANOP3.564e-3049.30Methylthioribose-1-phosphate isomerase OS=Xanthomo... [more]
MTNA_XANOM3.564e-3049.30Methylthioribose-1-phosphate isomerase OS=Xanthomo... [more]
MTNA_XANC53.564e-3049.30Methylthioribose-1-phosphate isomerase OS=Xanthomo... [more]
MTNA_SYNY33.564e-3050.35Methylthioribose-1-phosphate isomerase OS=Synechoc... [more]
MTNA_SYNWW3.564e-3049.30Methylthioribose-1-phosphate isomerase OS=Syntroph... [more]

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Properties
Property NameValue
Genbank descriptionC02010E01SK IF1 Citrus clementina cDNA clone C02010E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289212 ID=CX289212; Name=CX289212; organism=Citrus clementina; type=EST; length=434bp
AAGCTGCTGAAATTATGCTCAAAGATGATGTTGCTACAAACAAAGCTATT
GGTTCTTATGGGGCAAGTTTTCTTCAGAACCAGCTCAAAAATTCTAAATT
CTCTGTTCTTACTCATTGCAACACTGGCAGTCTTGCAACAGCTGGATATG
GTACCGCCCTTGGTGTGATCCGTGCACTTCATTCTGAGGGAGTGTTAGAA
AGAGCTTATTGCTCTGAAACACGTCCATTCAACCAAGGATCTAGACTCAC
TGCTTTTGAGTTGGTACATGATCGCATACCAGCTACTCTTATAGCCGACT
CTGCTGCGGCTGCATTGATGAAAGATGGTCGTGTGAGTGCTGTCATTGTC
GGAGCAGATCGAGTGGCTGCAAATGGTGACACTACTAACAAGATTGGAAC
CTACAGCCTTGCATTATGTGCAAAGTTTCATAAT
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